XLOC_039132 (mRNA) -

Overview


Name	XLOC_039132
Unique Name	XLOC_039132
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000041_pilon:85870..88356-
coding sequence from alignment at sc0000041_pilon:85870..88356-

mRNA from alignment at sc0000041_pilon:85870..88356-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_039132 ID=XLOC_039132|Name=XLOC_039132|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2487bp|location=Sequence derived from alignment at sc0000041_pilon:85870..88356- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATAATAATATCAAAAGTATACACCACAACAATGTTTTTCCTGACAT
GATCGGCAAACCGTACCTCCTAGCAGAAACATCTTTACGTACAACTGATT
GGGGAGAACACTTTCAATTCCTCGATAACACTGAACTTGGAAACACTGTT
TTCAATAACACGATATTGGATGAGATTCACCCTAGTGTATTTTCTTGCAA
GAATCTTTTGTCAAAAAGTCAGTGTAAAAAAATAATAACAAAGGCAGAGA
AATTAAATTTTCAACTATGTTGTTATGGCGAAGAAAGAAATAATTCTCGT
CTAGTTTTGTTTGATGAGAACTTTGCTGACTTTCTTTGGAAAAATTTGTC
AGAACAATTTGTAGATAAATTAGGAGATAATCCAGTTCATCCTTTTGGTT
TTGATGCTTCAAGAGGCAATTGGAAATTATCTGGAATTAATCAAGCCATG
CGTTTAAACAGATACAGTGGGAAAAATAAGGAATTTTTTGGTCCGCACAG
AGATGCTCCATTCTGTCCTAATGGTGATAAAAGATCTTTGTATACTATGC
TCATCTATTTGAATGATGATTTTGAAGGAGGTCAAACAATTTTACATTTT
CCAAAAAACATTTCAACTGATACCAAAGGTCAAACAATCAGTAAAGAAAT
TCAATTTCATGGTAATATTTTTCATGGATTTGACCACATCTCCATTAAAC
CACAAACAGGTACATGTTTGATCTTCAAACAAAATATTCTGCATCAAGGT
TACCCTTTACATTCAGAAAGTACCAATTATAAATATATTATTAAAACTGA
TATTATGGTTGAGCGCCCTGTCAAACTTGGATTTTCTCCACCTGTGGCAG
AGCTTCAAGACTATTTTGAATGTCTTCAATTATTTCGAGAAGCTCAGCAA
TGTGAATTAGCTGAAAATACAGCAAGAGCTAATGACTGCTATGAAAAGAG
CTTGTCTATTCGATATAATTACCCTAACCAAGAACAATTTGAGGAAAACT
TACCCAGGCAACATAGGGATTTTTCAGATGTTGCAGCCCCTGACAAGGAT
AATAATTCAATGGAGGCTATTGAAAATTTGTCTTTACCAAACATTTTTTC
GAAAGAGATTTGGCTTAAAATAATGAAATATATTGTTGACATCAAGTCTT
TGAACAATCTCTGTAAAGTGTTTCCCTTCTTGAAGTCTGAGAAGAAAAAG
CTATTCTTTGATAGAGTTGTTCCTGAGACTATTTACAGTAGTGGTGTTTA
TACAAATTTTTCAATATCTCAAAATGTAAACTTTGTTAACAACAATATGA
ACGAATTTGCCAAAGTTGCAGCAGTGTATTCAATGTGTTTACTCGGAAAT
GCACCCAATGATAAACACTATTTGGTGAATTATGATAGAGAAACAAGGAG
TGCAACAACTGTTCAGTTAAGAGATCTTCTTTATGGTGTATTTGCTGAGG
AACCTGTCCACGGTACCATCTTCAAAGTAGCACAAAGAAAAAAGGAAAAA
GATCCAAATAAAGATTTGTATCACAGTGTTGATAGAAATTACATGGCAAA
GTACTTTGATCGAGATGATATTGGGATAGATATGCAATCTGAATTTAGAT
CAAAGATTACAATTTTGTCTGAAACAGGAGATGGAGACGATAGAGATAAC
CTCTTTGTAGACTTACCACTAGCTGTCAGGGATCTAGAAGTGAGGAATAT
GCTGAATTCCTATGATCGCTATTATGAATATTGTAAAAATGAGCTTCCTC
GTGATGAACCACATGATGAACTTTATGAGAAAGGAGCTAGAGATTTCAAA
CTCGTAACTTATTCTGAAGATGATGGTTTTTATCCAGATGATCAGGTTGA
ATGCAATAAGGGAGATCTTGACTGCTATAAAGATCGTGATAAAGAAAGTG
TTGTTTGGAGAAGTAATATATATGATGATTCTGATGGTGAAGACTTCCCA
TTTCAAAAGATTGAGAAGCAAAAATTGGTCGATGAAAACATTACAATACA
GAAAGATTGTTTTCCAGGTGCAGCTATTATTAGAAAAATGAATGAACCTA
CAAAGATTTCAAAAGAAGATGGCTATTGTACTTGTTTTATGTTTCAACAT
TTGGGAGGTAAGCACAGTAAAAACTGCTCTAGCCACGTGTTTAACCATTT
AGTTGCAGATTTCAGTAAAATTAAGCTGAAGGTTTGCCCCATTACTATTG
ATGATTTTTTCTCAAGAAAACTAAAGGCTTGGGCAGAATATTTTTGTCCT
TGTGATGATTATGACTATAAAACTTTTAGTGTAAACATATGCCCTATGTC
AGACGTCATAAAACCGTTCAACCATGCTGCATGTCAATGCTGCACTCCAG
ATTACCAGATTGATGATTATGTGACTTTATCAAACTACCCGATGTTGAGT
AAAATTATTGTATTTTTTGCCCAGCACAAAGAGGATTCCTCAAAAGTTAA
TATGTTCACAGTTTATAGTGGTATTGTAACTCTATAA

Coding sequence (CDS) from alignment at sc0000041_pilon:85870..88356-

>XLOC_039132 ID=XLOC_039132|Name=XLOC_039132|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4974bp|location=Sequence derived from alignment at sc0000041_pilon:85870..88356- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATAATAATATCAAAAGTATACACCACAACAATGTTTTTCCTGACAT
GATCGGCAAACCGTACCTCCTAGCAGAAACATCTTTACGTACAACTGATT
GGGGAGAACACTTTCAATTCCTCGATAACACTGAACTTGGAAACACTGTT
TTCAATAACACGATATTGGATGAGATTCACCCTAGTGTATTTTCTTGCAA
GAATCTTTTGTCAAAAAGTCAGTGTAAAAAAATAATAACAAAGGCAGAGA
AATTAAATTTTCAACTATGTTGTTATGGCGAAGAAAGAAATAATTCTCGT
CTAGTTTTGTTTGATGAGAACTTTGCTGACTTTCTTTGGAAAAATTTGTC
AGAACAATTTGTAGATAAATTAGGAGATAATCCAGTTCATCCTTTTGGTT
TTGATGCTTCAAGAGGCAATTGGAAATTATCTGGAATTAATCAAGCCATG
CGTTTAAACAGATACAGTGGGAAAAATAAGGAATTTTTTGGTCCGCACAG
AGATGCTCCATTCTGTCCTAATGGTGATAAAAGATCTTTGTATACTATGC
TCATCTATTTGAATGATGATTTTGAAGGAGGTCAAACAATTTTACATTTT
CCAAAAAACATTTCAACTGATACCAAAGGTCAAACAATCAGTAAAGAAAT
TCAATTTCATGGTAATATTTTTCATGGATTTGACCACATCTCCATTAAAC
CACAAACAGGTACATGTTTGATCTTCAAACAAAATATTCTGCATCAAGGT
TACCCTTTACATTCAGAAAGTACCAATTATAAATATATTATTAAAACTGA
TATTATGGTTGAGCGCCCTGTCAAACTTGGATTTTCTCCACCTGTGGCAG
AGCTTCAAGACTATTTTGAATGTCTTCAATTATTTCGAGAAGCTCAGCAA
TGTGAATTAGCTGAAAATACAGCAAGAGCTAATGACTGCTATGAAAAGAG
CTTGTCTATTCGATATAATTACCCTAACCAAGAACAATTTGAGGAAAACT
TACCCAGGCAACATAGGGATTTTTCAGATGTTGCAGCCCCTGACAAGGAT
AATAATTCAATGGAGGCTATTGAAAATTTGTCTTTACCAAACATTTTTTC
GAAAGAGATTTGGCTTAAAATAATGAAATATATTGTTGACATCAAGTCTT
TGAACAATCTCTGTAAAGTGTTTCCCTTCTTGAAGTCTGAGAAGAAAAAG
CTATTCTTTGATAGAGTTGTTCCTGAGACTATTTACAGTAGTGGTGTTTA
TACAAATTTTTCAATATCTCAAAATGTAAACTTTGTTAACAACAATATGA
ACGAATTTGCCAAAGTTGCAGCAGTGTATTCAATGTGTTTACTCGGAAAT
GCACCCAATGATAAACACTATTTGGTGAATTATGATAGAGAAACAAGGAG
TGCAACAACTGTTCAGTTAAGAGATCTTCTTTATGGTGTATTTGCTGAGG
AACCTGTCCACGGTACCATCTTCAAAGTAGCACAAAGAAAAAAGGAAAAA
GATCCAAATAAAGATTTGTATCACAGTGTTGATAGAAATTACATGGCAAA
GTACTTTGATCGAGATGATATTGGGATAGATATGCAATCTGAATTTAGAT
CAAAGATTACAATTTTGTCTGAAACAGGAGATGGAGACGATAGAGATAAC
CTCTTTGTAGACTTACCACTAGCTGTCAGGGATCTAGAAGTGAGGAATAT
GCTGAATTCCTATGATCGCTATTATGAATATTGTAAAAATGAGCTTCCTC
GTGATGAACCACATGATGAACTTTATGAGAAAGGAGCTAGAGATTTCAAA
CTCGTAACTTATTCTGAAGATGATGGTTTTTATCCAGATGATCAGGTTGA
ATGCAATAAGGGAGATCTTGACTGCTATAAAGATCGTGATAAAGAAAGTG
TTGTTTGGAGAAGTAATATATATGATGATTCTGATGGTGAAGACTTCCCA
TTTCAAAAGATTGAGAAGCAAAAATTGGTCGATGAAAACATTACAATACA
GAAAGATTGTTTTCCAGGTGCAGCTATTATTAGAAAAATGAATGAACCTA
CAAAGATTTCAAAAGAAGATGGCTATTGTACTTGTTTTATGTTTCAACAT
TTGGGAGGTAAGCACAGTAAAAACTGCTCTAGCCACGTGTTTAACCATTT
AGTTGCAGATTTCAGTAAAATTAAGCTGAAGGTTTGCCCCATTACTATTG
ATGATTTTTTCTCAAGAAAACTAAAGGCTTGGGCAGAATATTTTTGTCCT
TGTGATGATTATGACTATAAAACTTTTAGTGTAAACATATGCCCTATGTC
AGACGTCATAAAACCGTTCAACCATGCTGCATGTCAATGCTGCACTCCAG
ATTACCAGATTGATGATTATGTGACTTTATCAAACTACCCGATGTTGAGT
AAAATTATTGTATTTTTTGCCCAGCACAAAGAGGATTCCTCAAAAGTTAA
TATGTTCACAGTTTATAGTGGTATTGTAACTCTATAAATGTATAATAATA
TCAAAAGTATACACCACAACAATGTTTTTCCTGACATGATCGGCAAACCG
TACCTCCTAGCAGAAACATCTTTACGTACAACTGATTGGGGAGAACACTT
TCAATTCCTCGATAACACTGAACTTGGAAACACTGTTTTCAATAACACGA
TATTGGATGAGATTCACCCTAGTGTATTTTCTTGCAAGAATCTTTTGTCA
AAAAGTCAGTGTAAAAAAATAATAACAAAGGCAGAGAAATTAAATTTTCA
ACTATGTTGTTATGGCGAAGAAAGAAATAATTCTCGTCTAGTTTTGTTTG
ATGAGAACTTTGCTGACTTTCTTTGGAAAAATTTGTCAGAACAATTTGTA
GATAAATTAGGAGATAATCCAGTTCATCCTTTTGGTTTTGATGCTTCAAG
AGGCAATTGGAAATTATCTGGAATTAATCAAGCCATGCGTTTAAACAGAT
ACAGTGGGAAAAATAAGGAATTTTTTGGTCCGCACAGAGATGCTCCATTC
TGTCCTAATGGTGATAAAAGATCTTTGTATACTATGCTCATCTATTTGAA
TGATGATTTTGAAGGAGGTCAAACAATTTTACATTTTCCAAAAAACATTT
CAACTGATACCAAAGGTCAAACAATCAGTAAAGAAATTCAATTTCATGGT
AATATTTTTCATGGATTTGACCACATCTCCATTAAACCACAAACAGGTAC
ATGTTTGATCTTCAAACAAAATATTCTGCATCAAGGTTACCCTTTACATT
CAGAAAGTACCAATTATAAATATATTATTAAAACTGATATTATGGTTGAG
CGCCCTGTCAAACTTGGATTTTCTCCACCTGTGGCAGAGCTTCAAGACTA
TTTTGAATGTCTTCAATTATTTCGAGAAGCTCAGCAATGTGAATTAGCTG
AAAATACAGCAAGAGCTAATGACTGCTATGAAAAGAGCTTGTCTATTCGA
TATAATTACCCTAACCAAGAACAATTTGAGGAAAACTTACCCAGGCAACA
TAGGGATTTTTCAGATGTTGCAGCCCCTGACAAGGATAATAATTCAATGG
AGGCTATTGAAAATTTGTCTTTACCAAACATTTTTTCGAAAGAGATTTGG
CTTAAAATAATGAAATATATTGTTGACATCAAGTCTTTGAACAATCTCTG
TAAAGTGTTTCCCTTCTTGAAGTCTGAGAAGAAAAAGCTATTCTTTGATA
GAGTTGTTCCTGAGACTATTTACAGTAGTGGTGTTTATACAAATTTTTCA
ATATCTCAAAATGTAAACTTTGTTAACAACAATATGAACGAATTTGCCAA
AGTTGCAGCAGTGTATTCAATGTGTTTACTCGGAAATGCACCCAATGATA
AACACTATTTGGTGAATTATGATAGAGAAACAAGGAGTGCAACAACTGTT
CAGTTAAGAGATCTTCTTTATGGTGTATTTGCTGAGGAACCTGTCCACGG
TACCATCTTCAAAGTAGCACAAAGAAAAAAGGAAAAAGATCCAAATAAAG
ATTTGTATCACAGTGTTGATAGAAATTACATGGCAAAGTACTTTGATCGA
GATGATATTGGGATAGATATGCAATCTGAATTTAGATCAAAGATTACAAT
TTTGTCTGAAACAGGAGATGGAGACGATAGAGATAACCTCTTTGTAGACT
TACCACTAGCTGTCAGGGATCTAGAAGTGAGGAATATGCTGAATTCCTAT
GATCGCTATTATGAATATTGTAAAAATGAGCTTCCTCGTGATGAACCACA
TGATGAACTTTATGAGAAAGGAGCTAGAGATTTCAAACTCGTAACTTATT
CTGAAGATGATGGTTTTTATCCAGATGATCAGGTTGAATGCAATAAGGGA
GATCTTGACTGCTATAAAGATCGTGATAAAGAAAGTGTTGTTTGGAGAAG
TAATATATATGATGATTCTGATGGTGAAGACTTCCCATTTCAAAAGATTG
AGAAGCAAAAATTGGTCGATGAAAACATTACAATACAGAAAGATTGTTTT
CCAGGTGCAGCTATTATTAGAAAAATGAATGAACCTACAAAGATTTCAAA
AGAAGATGGCTATTGTACTTGTTTTATGTTTCAACATTTGGGAGGTAAGC
ACAGTAAAAACTGCTCTAGCCACGTGTTTAACCATTTAGTTGCAGATTTC
AGTAAAATTAAGCTGAAGGTTTGCCCCATTACTATTGATGATTTTTTCTC
AAGAAAACTAAAGGCTTGGGCAGAATATTTTTGTCCTTGTGATGATTATG
ACTATAAAACTTTTAGTGTAAACATATGCCCTATGTCAGACGTCATAAAA
CCGTTCAACCATGCTGCATGTCAATGCTGCACTCCAGATTACCAGATTGA
TGATTATGTGACTTTATCAAACTACCCGATGTTGAGTAAAATTATTGTAT
TTTTTGCCCAGCACAAAGAGGATTCCTCAAAAGTTAATATGTTCACAGTT
TATAGTGGTATTGTAACTCTATAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_039132	XLOC_039132-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000041_pilon	genome	sc0000041_pilon:85870..88356 -

Properties


Property Name	Value
Aaloc	1-2487:2488

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XLOC_039132 (mRNA) -