XLOC_040763 (mRNA) -

Overview


Name	XLOC_040763
Unique Name	XLOC_040763
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000301_pilon:147165..152569-
coding sequence from alignment at sc0000301_pilon:147165..152569-

mRNA from alignment at sc0000301_pilon:147165..152569-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_040763 ID=XLOC_040763|Name=XLOC_040763|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5405bp|location=Sequence derived from alignment at sc0000301_pilon:147165..152569- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAATGGTAATGTCATATTGCAAAGCAGTGCTTTTATACATTTTCTG
TATGTCTTGCCACGCAGTAAGAGATCTATATCGTGATCTTGATGGTGGAT
TTGGTGAAGAGCTGGATTTCTCGCAAACCAGTGGCCGATCTAACCAAAGA
ATTATACAATGCGATCTTGGTGATGATTTCAAAATGTTTGGTACGCCAAG
TCGAACTGCATTTGTAAGTCATTTAACGATAAGTATTATTAAAACCTTTT
CTTATTTTCTGGACGAATGGTTTTTTTTGAGTCAATTCATCTTCACCATC
ATTGAATACACCTTTTCGACCGTAATCGAGCGGTCAGGTGCGTGCCTCTT
AATTATTTAACTATCCCCCTAAACTCGATCCAATCCTTTTTTAAACATTT
TCTATTGTCTATAGGTGCGAAAAAAGGACTGGAACGGTTTTAGTGAGATA
AAGCAGACAAAAAATGCCCGCGCTGCAATTGGTGGCTACGGTTGAAAAGG
TGTATATTGTATTGTTTTTTAGAAACGTGCAAAGAAGATTAATAGAGGTA
AAAGAGTTTCCTGACTGAGAAGTTACATTATATAAACCATTTTTCTGACC
ACAACAATTTTTTTTCTCACACGAAATGTACAGGTTCATTTCAGTGGTGT
GCTCACCTTTGACCCATCAACCGCGAGAGAAATATCCACTCTTCGATGTC
AACAAAGACCTGACTCCACTTTGGATTTCATTGCTCCTTATTGGCGTCAT
TACGACCATGGCAAGATTTCAATTATGGAATATAATAAAAATGCTGTCGT
CGAACCCCCATCATCATTATTACCGTCAATAACGACGATACCGACCGTGT
CGTCTGATATATTGTCAACAACGGTTAACATATTGCCGATAACGTCTACA
GCTTTACTGGCAACACCTGCTATGTCAAATATAGCGTCTTCTGAAGTGAT
TTCTGCAACGTCTTCAGTGATAGCTCCATCGTCTTCGATTAAAGATCTAA
CGTCGTCAGTTAAATCTACGCCGTCAACATTCTCAAGCATTCCTACGTCA
ATAGGATCCTCCATCTCATTACAATCTGAATCAGTCTCACCTTCTCTAAG
TATTGCTGCCAGTAGTTTTATGTCGACTCCAATACAACCAATGCCGACAG
AAAGTCAAGCTCCAATAACAACCGAATCAACTCAAATAGACGAACAAATT
GACCAACCAATGACGACGGCGCAATCAAATGACCAATCAACTAACGGCAT
AGAGTCTATCAACCAATCAACAGAATCTGCAACAACTTTCGAGCCTGTCA
TAAACATAGTCGTCGATGAAGACAACCACCGCTCACGGCGAAACACCGAC
ACCGACAAAGACACGTCAAATCTTCTTCAATTCCCAGTAAAGTTTCTACC
AGATATTGCTACAGATTTAAAAGAAGCTTTTGAGACGGGTAAAAAACTGA
ACCGTGTGACCGTCAAACAACGTAATAATTTGACAGCGGATAGAATCGAG
AGGGTGATTGCGTTCACTTGGTTTGATATGTATTCGGATGCAGAAACCAA
TAGTTTGGGAAGGGTAAGTTAACTCTTCTTTGTATTTGTCTGGACAGTCG
ACGCTCTCTAAATCGATTTTCAATGGGAATGGAATTTCCATAAGTGTCGC
TTATACGAGTTTCTTGTTGACGGTGACTTTCAATGTTATCGAATGAAGAA
GCACATCCAATAGTACAATGTCGAGTTAGAGAGTGTCAACTCTAGATAAA
CCTTTGAGAATGCACTGAACGTTTTCAAGATGGCGAATCACAAAGTGCAC
TACATGTTTTTTTTTATAAGCATACAAAAATCCGAAAACAGGCTCAGAAA
TGCTTAGATCGAAAGCTTAATAAGGCTGAAAAATGCTTGAGGGGATGCTT
AAATCTAAAGCATAGATTTAGGGAAATACTGAAAATCGGTAAAATTCCAG
CCAAAAAAAGCCAAAATCAGGAAAAAAACATATTTCGTAGGCTCAAGTAA
TGCTTACCATATGCTTAATTTTCCCCCATATCTGAGCCTAGATATGCTTA
TAAGTGCAATGCTTATAAAAAAAAAACATGTAGATCTTAATTTTAGAATG
ATGATGCATGAAATTCAAAATGAAGGAGGTATACCATCTGGGCTATCCAA
TCATAGATTTATAAATCCCGAAGGGCTAGATGGCGTACTTTTGCTGAAAA
GTGTGCCGTGGTTAGGTAGGAAATCCTATATCTAAGTCACGTGACATTAC
AATAGAATTTCAGCGCTTGACCAATAATAAGATTTGCGGGTTTTCGAAAA
CAATAGCAACAATATTTTTTCCGATATTCACTTTTTTTGCCTGCGATGGC
TTAAAACACGACATTTAGCCCTTCGGGCTTTTTAAATCTATGTATCCAAT
GTGATAGCTTAATTTAGAGAGTCTATCGAATATGTTTATCTGCTCCTCAA
TAAAACTTAACCATTGAGATCAATGTCAATTGAATATCTTCTACATGACA
ATATCGATGGGCAAAAAAATATCAACCTCGAAATTTAAAACAACCCAACC
CCAACTTTCAGACCATGTGCTTTATTCTTTGGACTATGTTAAGATTTAAG
AACCCAAATAAATCATATAATCCAATTCACTATTCTGTTTATTACTGTTT
ATTATTCACTTTTAAGCGTAACCGCCACAGCTTTCAGACGTTGCTCATCA
AAGTTGGTGAACAGTGGTTTGCACAGAACTATTATGCTGTCCTCTCATCT
AATGGTAATTTTAACGTCAATAAAAACGAAGAGGGTCAAACTTGTGGGCA
TGCTTCGGTAAGTTGCGTAGACGATGCTATCGTCCGTTTTAGAGGGTCAG
TAATCGCGAGAAAATGTATAAGTGCATAGTCAGGGCGTTAGGGCGGTTTA
CGGGGAATAAGTGGCGGTAGAGCTTGGAGCAAATATTGTAAACACCTCTG
TAAACCACTGCTTACTCCTCCCGAATTTATCACACCTCCTAAACTATTCC
CTTTTTAGCGATCTTGTGTAGACGATAAGATCGTCTATAAGTTGCGCGCC
CTTACGCCCGATGCATTATACAAGATTCCCTCAGTCTCTTTTGAAGAGAA
TTTTTTTCAGTCATCAAAAGAAGAATATCTTATTTTACTCTAAATAAAGT
CGGTTTAGTCTATAATTGCTTCATTTTGGGGTTACTTAGAGGTACTATTT
CAGGTCCCTCCGACAATTAGTCGCCCCCTGTTTAATAAGATTTGAAGACA
CATTTTTTGATGTATTTGTGAAGAAATAAAAATTTCAGTACCCAAATAAC
TCTTACTTATTTTACTCTTATTATTCACTCTTACTTATTTTATTCACTCT
TACTTACTTGGTTATACTATTGCCTACTACACCCTGGCTGGTATATATGT
TTTTCTTTTCAATTTCAGGTTGGGATAAGTCGCTTTTTACCAGATACTCC
TTCAGACGAAGTTGCTTTCTCTCGTGGTGTTTATTACCTCGTCAATATTC
CAAAAATCTTCGAAATTTTCACCAATGAATATAATTGGAGAGATCTGGGA
AGTTGGGTTTATGATCTAAACCCTGATGTCGGTAAGTTCATAATTATTAC
CGAGTTATGTATGTGTATTTTTCTGCGACGGAGGCGGCAAGGTTCTAATT
TGTCCTGACTGATTGAGGACGACGGTAAATCAGTACTTTTACCGTCCTCG
ATTTAGCGGGTCAAAACTGCGGGCTATTCCAAATCGCTTCAGTCACTTTA
CCGTCCTCAAAAGCGAAATACATAAACTCGCTATTAATTTGTCAGTGAAG
GTTGAGAGTCTATCGCCATGCTACCCTAACACCCTGCCTGGATTGGAAAC
GATTGGGATTCAAAGTGATGTAAACCTTTAGTTGAATCCTTCCTTCACGC
CACCAATATGTAGTTTTTCTTTTAATTACCAATAGGTAGCAATGTAATAC
AGGTGGAATCGTTTTATGTTAACGTGTGTAAGGAAAATCTTCCGCAAGGC
TTAGAAGCTTATAATTTGTGTTAATTATACAGTTTGTCAATCTGGGATCC
TCGCATGGCCCCGAAATATTCGAGCACAGTGGAGTCCCTTTTGAACCCCT
TACTTACCGAAAAAAGTTAATGTAAATCTAAAATGCAAAAGAAGACATCT
GACTGTGCTACAGGACTATAATAAATCGATTTCCATCCTCTCCATAGAAA
ACCAACCAACACCAATCACTTTCAATTGTGTTGAAGACAGTCAAGATGAC
GCCAAATGCATCATCCTTTTCGCATCATCAGAAGCTCGAAGCAACAAGAA
AAGAAGACGAAGGGAAACTAACTTTGTTGAGAAATTACTCGTAAAGTTTT
CGGAAACCTCACACAACGGTCACCACACGACGAAAAATTATCGGGAAAAA
CGAGTATTCACTACATTCCCACCGACAGTGCCCATCACGACTAGCAAATA
TTCTCATAAAACACGGCAACGCAGTACAACCTTTACGAAAGCTCCAATGC
TTCAACCCCGGCATACTTTCTCTTCTATCTCGTCCATCGGTACGACGACA
GCGAACCCAAATAAAGCCGACGAGCTGATCACGATTTCCGACGGATTATT
TACGATCCCGACCATGCCATCGTCGGTAGAACCAAACAACAAGCCTCTCA
ACATTTCAGAAGCTGCTCAAATCATTGCCAACAAATATTGCCGATATCGT
GATCCAGGGCTTTACAAACTGCCTTTAATATGCGATGTTTTCATTTCTTG
CAGCTTAGGAGGAAAGGCCACGCCTATGGTCTGTCCGAAAGGAACTGGAT
TCAACCCAAGGATTAACGTGTGTGACCATGCTTCTTATTATGAGTGCAAC
ACAGACAACATTCTAGGTAAGTGTCACTAATTACTTTTGGTTTATCAAGT
AACATTTTGTACTAAGTGCGAAGTCTTTGGAATGACCTTGCGCACCATAG
CCGGATCCTTTACCTTTAACCTACGGTCGGTAATGTCTTTTAAGACATGA
TTACCTGAGGGCTAACTTTTTATTTGCGCTAACGATTCACCATATACCTT
GGGTTCCATTTGTAACTTAAGTTAAGGTTTTTTTAAGTTCAAATAAACTG
TGATATAATCTTAATTGTTCAAGTTTAGCTTATTTCTCTTCGTTTAATTT
TCAGTTAATGCGCTGATTCCAAAGAGTCAGGCCCAACTAAATCACCGGAA
CTTCTGCGAATACCAGGGTTACGGTATCTATCCGGATCCATCATCATGTA
CAAATTACTACGCATGCACCAATGCCCGGTCAATACGCATGTCATGTCCG
GCAGGTTTACAATTTCAACCGGATGAAACGAAGAAAAACGGGAGATGTGA
ATTCGCATACAAAGTGAATTGTAAAGAGGGAAAAAGAACAGATGAAATCG
CATAA

Coding sequence (CDS) from alignment at sc0000301_pilon:147165..152569-

>XLOC_040763 ID=XLOC_040763|Name=XLOC_040763|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4734bp|location=Sequence derived from alignment at sc0000301_pilon:147165..152569- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAATGGTAATGTCATATTGCAAAGCAGTGCTTTTATACATTTTCTG
TATGTCTTGCCACGCAGTAAGAGATCTATATCGTGATCTTGATGGTGGAT
TTGGTGAAGAGCTGGATTTCTCGCAAACCAGTGGCCGATCTAACCAAAGA
ATTATACAATGCGATCTTGGTGATGATTTCAAAATGTTTGGTACGCCAAG
TCGAACTGCATTTATGAAAATGGTAATGTCATATTGCAAAGCAGTGCTTT
TATACATTTTCTGTATGTCTTGCCACGCAGTAAGAGATCTATATCGTGAT
CTTGATGGTGGATTTGGTGAAGAGCTGGATTTCTCGCAAACCAGTGGCCG
ATCTAACCAAAGAATTATACAATGCGATCTTGGTGATGATTTCAAAATGT
TTGGTACGCCAAGTCGAACTGCATTTGTTCATTTCAGTGGTGTGCTCACC
TTTGACCCATCAACCGCGAGAGAAATATCCACTCTTCGATGTCAACAAAG
ACCTGACTCCACTTTGGATTTCATTGCTCCTTATTGGCGTCATTACGACC
ATGGCAAGATTTCAATTATGGAATATAATAAAAATGCTGTCGTCGAACCC
CCATCATCATTATTACCGTCAATAACGACGATACCGACCGTGTCGTCTGA
TATATTGTCAACAACGGTTAACATATTGCCGATAACGTCTACAGCTTTAC
TGGCAACACCTGCTATGTCAAATATAGCGTCTTCTGAAGTGATTTCTGCA
ACGTCTTCAGTGATAGCTCCATCGTCTTCGATTAAAGATCTAACGTCGTC
AGTTAAATCTACGCCGTCAACATTCTCAAGCATTCCTACGTCAATAGGAT
CCTCCATCTCATTACAATCTGAATCAGTCTCACCTTCTCTAAGTATTGCT
GCCAGTAGTTTTATGTCGACTCCAATACAACCAATGCCGACAGAAAGTCA
AGCTCCAATAACAACCGAATCAACTCAAATAGACGAACAAATTGACCAAC
CAATGACGACGGCGCAATCAAATGACCAATCAACTAACGGCATAGAGTCT
ATCAACCAATCAACAGAATCTGCAACAACTTTCGAGCCTGTCATAAACAT
AGTCGTCGATGAAGACAACCACCGCTCACGGCGAAACACCGACACCGACA
AAGACACGTCAAATCTTCTTCAATTCCCAGTAAAGTTTCTACCAGATATT
GCTACAGATTTAAAAGAAGCTTTTGAGACGGGTAAAAAACTGAACCGTGT
GACCGTCAAACAACGTAATAATTTGACAGCGGATAGAATCGAGAGGGTGA
TTGCGTTCACTTGGTTTGATATGTATTCGGATGCAGAAACCAATAGTTTG
GGAAGGGTTCATTTCAGTGGTGTGCTCACCTTTGACCCATCAACCGCGAG
AGAAATATCCACTCTTCGATGTCAACAAAGACCTGACTCCACTTTGGATT
TCATTGCTCCTTATTGGCGTCATTACGACCATGGCAAGATTTCAATTATG
GAATATAATAAAAATGCTGTCGTCGAACCCCCATCATCATTATTACCGTC
AATAACGACGATACCGACCGTGTCGTCTGATATATTGTCAACAACGGTTA
ACATATTGCCGATAACGTCTACAGCTTTACTGGCAACACCTGCTATGTCA
AATATAGCGTCTTCTGAAGTGATTTCTGCAACGTCTTCAGTGATAGCTCC
ATCGTCTTCGATTAAAGATCTAACGTCGTCAGTTAAATCTACGCCGTCAA
CATTCTCAAGCATTCCTACGTCAATAGGATCCTCCATCTCATTACAATCT
GAATCAGTCTCACCTTCTCTAAGTATTGCTGCCAGTAGTTTTATGTCGAC
TCCAATACAACCAATGCCGACAGAAAGTCAAGCTCCAATAACAACCGAAT
CAACTCAAATAGACGAACAAATTGACCAACCAATGACGACGGCGCAATCA
AATGACCAATCAACTAACGGCATAGAGTCTATCAACCAATCAACAGAATC
TGCAACAACTTTCGAGCCTGTCATAAACATAGTCGTCGATGAAGACAACC
ACCGCTCACGGCGAAACACCGACACCGACAAAGACACGTCAAATCTTCTT
CAATTCCCAGTAAAGTTTCTACCAGATATTGCTACAGATTTAAAAGAAGC
TTTTGAGACGGGTAAAAAACTGAACCGTGTGACCGTCAAACAACGTAATA
ATTTGACAGCGGATAGAATCGAGAGGGTGATTGCGTTCACTTGGTTTGAT
ATGTATTCGGATGCAGAAACCAATAGTTTGGGAAGGCGTAACCGCCACAG
CTTTCAGACGTTGCTCATCAAAGTTGGTGAACAGTGGTTTGCACAGAACT
ATTATGCTGTCCTCTCATCTAATGGTAATTTTAACGTCAATAAAAACGAA
GAGGGTCAAACTTGTGGGCATGCTTCGCGTAACCGCCACAGCTTTCAGAC
GTTGCTCATCAAAGTTGGTGAACAGTGGTTTGCACAGAACTATTATGCTG
TCCTCTCATCTAATGGTAATTTTAACGTCAATAAAAACGAAGAGGGTCAA
ACTTGTGGGCATGCTTCGGTTGGGATAAGTCGCTTTTTACCAGATACTCC
TTCAGACGAAGTTGCTTTCTCTCGTGGTGTTTATTACCTCGTCAATATTC
CAAAAATCTTCGAAATTTTCACCAATGAATATAATTGGAGAGATCTGGGA
AGTTGGGTTTATGATCTAAACCCTGATGTCGGTTGGGATAAGTCGCTTTT
TACCAGATACTCCTTCAGACGAAGTTGCTTTCTCTCGTGGTGTTTATTAC
CTCGTCAATATTCCAAAAATCTTCGAAATTTTCACCAATGAATATAATTG
GAGAGATCTGGGAAGTTGGGTTTATGATCTAAACCCTGATGTCGAAAACC
AACCAACACCAATCACTTTCAATTGTGTTGAAGACAGTCAAGATGACGCC
AAATGCATCATCCTTTTCGCATCATCAGAAGCTCGAAGCAACAAGAAAAG
AAGACGAAGGGAAACTAACTTTGTTGAGAAATTACTCGTAAAGTTTTCGG
AAACCTCACACAACGGTCACCACACGACGAAAAATTATCGGGAAAAACGA
GTATTCACTACATTCCCACCGACAGTGCCCATCACGACTAGCAAATATTC
TCATAAAACACGGCAACGCAGTACAACCTTTACGAAAGCTCCAATGCTTC
AACCCCGGCATACTTTCTCTTCTATCTCGTCCATCGGTACGACGACAGCG
AACCCAAATAAAGCCGACGAGCTGATCACGATTTCCGACGGATTATTTAC
GATCCCGACCATGCCATCGTCGGTAGAACCAAACAACAAGCCTCTCAACA
TTTCAGAAGCTGCTCAAATCATTGCCAACAAATATTGCCGATATCGTGAT
CCAGGGCTTTACAAACTGCCTTTAATATGCGATGTTTTCATTTCTTGCAG
CTTAGGAGGAAAGGCCACGCCTATGGTCTGTCCGAAAGGAACTGGATTCA
ACCCAAGGATTAACGTGTGTGACCATGCTTCTTATTATGAGTGCAACACA
GACAACATTCTAGAAAACCAACCAACACCAATCACTTTCAATTGTGTTGA
AGACAGTCAAGATGACGCCAAATGCATCATCCTTTTCGCATCATCAGAAG
CTCGAAGCAACAAGAAAAGAAGACGAAGGGAAACTAACTTTGTTGAGAAA
TTACTCGTAAAGTTTTCGGAAACCTCACACAACGGTCACCACACGACGAA
AAATTATCGGGAAAAACGAGTATTCACTACATTCCCACCGACAGTGCCCA
TCACGACTAGCAAATATTCTCATAAAACACGGCAACGCAGTACAACCTTT
ACGAAAGCTCCAATGCTTCAACCCCGGCATACTTTCTCTTCTATCTCGTC
CATCGGTACGACGACAGCGAACCCAAATAAAGCCGACGAGCTGATCACGA
TTTCCGACGGATTATTTACGATCCCGACCATGCCATCGTCGGTAGAACCA
AACAACAAGCCTCTCAACATTTCAGAAGCTGCTCAAATCATTGCCAACAA
ATATTGCCGATATCGTGATCCAGGGCTTTACAAACTGCCTTTAATATGCG
ATGTTTTCATTTCTTGCAGCTTAGGAGGAAAGGCCACGCCTATGGTCTGT
CCGAAAGGAACTGGATTCAACCCAAGGATTAACGTGTGTGACCATGCTTC
TTATTATGAGTGCAACACAGACAACATTCTAGTTAATGCGCTGATTCCAA
AGAGTCAGGCCCAACTAAATCACCGGAACTTCTGCGAATACCAGGGTTAC
GGTATCTATCCGGATCCATCATCATGTACAAATTACTACGCATGCACCAA
TGCCCGGTCAATACGCATGTCATGTCCGGCAGGTTTACAATTTCAACCGG
ATGAAACGAAGAAAAACGGGAGATGTGAATTCGCATACAAAGTGAATTGT
AAAGAGGGAAAAAGAACAGATGAAATCGCATAATTAATGCGCTGATTCCA
AAGAGTCAGGCCCAACTAAATCACCGGAACTTCTGCGAATACCAGGGTTA
CGGTATCTATCCGGATCCATCATCATGTACAAATTACTACGCATGCACCA
ATGCCCGGTCAATACGCATGTCATGTCCGGCAGGTTTACAATTTCAACCG
GATGAAACGAAGAAAAACGGGAGATGTGAATTCGCATACAAAGTGAATTG
TAAAGAGGGAAAAAGAACAGATGAAATCGCATAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_040763	XLOC_040763-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000301_pilon	genome	sc0000301_pilon:147165..152569 -

Properties


Property Name	Value
Aaloc	2119-2367:250
Aaloc	1450-2115:1207
Aaloc	1285-1446:1988
Aaloc	1144-1284:2740
Aaloc	214-1143:4773
Aaloc	1-213:5406

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XLOC_040763 (mRNA) -