TCONS_00014506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014506
Unique NameTCONS_00014506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014506 ID=TCONS_00014506|Name=TCONS_00014506|organism=Clytia hemisphaerica|type=transcript|length=1282bp
AGGAACTCCATCTGCTTTAAAACAATTGGAAAAATTTAACCAATGTTTCt
acttatttgagtaaataTGAAATGGGGTTGAATCattttctaacttttat
ttCTCCTTACACTTTGTTAGACTATAAAGTAAGTGTCTGAGGATGGAcag
tttttacaagtttttcttGTTTCGTCGTCTTACAAAATTTCGCTCCATTT
GGACGTTGACAGAGGAGGATGCAGCAGAAGCTTTCGCAGATTTTGTAGCC
GATGGTTGTTGCTATAGTAACAATCTAAGTAACGTGAAAAACAGCGTACG
AACGAAGAAAATTACTGCAAGAAATTATCACCAGTACGTTTTAGAGACAT
TTTATGAAGAAAGGACGACAGTATGGCACCAAGAGCCTTACGTGGATCAA
ACGATAGACGGGATGGAGAATGGTTGTCCGACGCATCCGTGGAATATCCC
TGTTTCAATGCCCTCTGTGTTTCAACCAAATCAACTATCCATTGAAGTCC
CTCATACTGCTTTCATCAAGGTACTCAACCAATGTTTAACCAATCGAATC
GAAGTGGTCTATAATATTCTAGAACGATCAGATAAACGGTCAAATGATTA
CATGCTTAGTCGACTTTCCACCTACATCCGTCAGCTTCCGACTACTAATT
TGTGATGTAATTTAATCTCACAGACGAAAGTCGAATATCATATTATCTTT
CCCGAAATACATTTAGTTTCGAGAATATTAACCTCAAAGGTCATACTGTC
TTCAAACTATTCAGTTTTATTTCTTTTACGACACGACAGGATTGTTCGAC
ATGTCGACGCAACGGAAGTCGAAAGTGTTCTTCGTGTCAAGGATGTGGCA
AGATCAAATGTGGAGTATGTGATGGACTTGGAGTTCTCCAACTGTTTTCA
CCAGATGAACTGACATTCGAAAATAGCACCTCCATAACAAACCGCTCATG
TCCTCACTGTAACGGTGGAAACAGAGAGTGCAAGAAATGTCAAGGCAATG
gaaaaatcatttgttttgtCTGCCAAGGTCATGGTGCTTTGAAAGTATCC
ACTCGATTAATTGTGAAGTGGAAGCTGATGAAAGACGAGCGAATCATAGA
ACGATCACACATTCCCAAACAACTATTCAAAGAAATCTCTGGCACGTCCG
TCTTCCAAGAACAAAACGATCGAGTCTATCCTTTGCTCGATTTCCCTGAG
AATGGAATCAACGATTTATCAGCCAAATTGATCAAAGGACACAACGAACA
GCTAAAACATGCCAAAATCCGAATGCAGGTAC
Run BLAST on NCBI

transcript from alignment at sc0000188:149899..152853-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014506 ID=TCONS_00014506|Name=TCONS_00014506|organism=Clytia hemisphaerica|type=transcript|length=2955bp|location=Sequence derived from alignment at sc0000188:149899..152853- (Clytia hemisphaerica)
AGGAACTCCATCTGCTTTAAAACAATTGGAAAAATTTAACCAATGTTTCT
ACTTATTTGAGTAAATATGAAATGGGGTTGAATCATTTTCTAACTTTTAT
TTCTCCTTACACTTTGTTAGACTATAAAGTAAGTGTCTGAGGATGGACAG
TTTTTACAAGTTTTTCTTGTTTCGTCGTCTTACAAAATTTCGCTCCATTT
GGTAAGTTCCATCATGGTTCCACCTGAAATTTCAAGTGCTCACTCTTGAA
AATTCTCAACCTGGTTTCGGGAAAACATCTAACTTGTTAACTTGTGCAAA
GGAGGACTATCTCTTCGAAAAAGATTTGAGATATTGAGCTAGCATGCACT
TCCATATCAATAATGTCTATAGGTCATTACAAATCTTAAAAATCACTTTT
GTCTAGCTTCTCTGGGAGCTAAATTGTTCTTTTACTTAAAATATAAGTTT
TAGAGGTCTTTGAGTAGGGGTAGAGATATTTTATGCTTTGTAATATTGCG
TGTCGAGCAAATCAGTTTATAACAAATATGCATTTCACTAGTTTTGGTGA
ATTATGATCTTTAAGATCTTGTAGAAGCTGGCATGAAAAAAACTTCCGTT
CGCTACCCGGGTTCACCATCACAGTCCATTATCCTATTCTACAAGAGCTA
GTAGTCAACGAGGTAGTCAATGTACCTTTGTTTTTCATCAAGAAGGATAT
TTCAAAACATAAGTGAGGAGTGAGTATTACATCTACACAAGTAGACAAGA
AGAGTAGAAGCGTAAAACGATAAATTAAAAAAATCAGTAGTATGGACAAC
AAAGGTCTTATCCTTCAAGAAGTGACCAACAAGATATATGGAAGCAAACT
GACTTAAACTTCGCTGTTTTTCAAATTATAATATACGAGAAAAATCCTCT
TTCGATATATCAAAATAAATTATCCTCCCGTATTCTTGAAAACTAACTAT
CAAAATTGAATCTCATTTTTCTTTTCTTTTGTTTACCTTCTTGTTTTTCC
CTTTAATACTGTTCCTGATGTGAAAGAGAAAGCAAAGATCTTGATATTAT
CAAAAAAAGGATTTGCGCGAATGAGGAGGGATTGTTTTCTCAAAATCACG
TTGATCTAGTTGTCGCTGTGTTGAAAGCTTGTAGACTTTTCGAAATATTG
ACGAACCCAAGAACAAGATTTATACAAAAACAACATAATGTAGCTCCATA
TAATAAATAGCTTTTGAAATACAATGGCAAAATCAAGTCTAAATAACAGT
AATACAAGAAGAGCCAGGTAAGTACACTACTGTGCAGTAAAGGTTTTTTC
TAAGTGATCAATATACGTTAGGTAGATAATTTTTCGAATTTTTTTGAATT
CTTCAGGACGTTGACAGAGGAGGATGCAGCAGAAGCTTTCGCAGATTTTG
TAGCCGATGGTTGTTGCTATAGTAACAATCTAAGTAACGTGAAAAACAGC
GTACGAACGAAGAAAATTACTGCAAGAAATTATCACCAGGTGAAATGTTC
ACTACCCTTCTCACTTTTCACTTTGTTTAAAAATGCTTTTACGAATATAC
GGGACCAGACAGCTTTTTCTATGGTTAAGAGCGAATCTATGTTTTTGTCT
ATTGATCATATTGTTGATGTTACAAGTGGGACGAAGACTACAAACTACTA
TTACTAACCGTCAAAAACCTTTGCCAAATCAACAAGTTATCAAACAAGCT
CTTCCCTCATTCTCAGTACGTTTTAGAGACATTTTATGAAGAAAGGACGA
CAGTATGGCACCAAGAGCCTTACGTGGATCAAACGATAGACGGGATGGAG
AATGGTTGTCCGACGCATCCGTGGAATATCCCTGTTTCAATGCCCTCTGT
GTTTCAACCAAATCAACTATCCATTGAAGTCCCTCATACTGCTTTCATCA
AGGTACTCAACCAATGTTTAACCAATCGAATCGAAGTGGTCTATAATATT
CTAGAACGATCAGATAAACGGTCAAATGATTACATGCTTAGTCGACTTTC
CACCTACATCCGTCAGCTTCCGACTACTAATTTGTGATGTAATTTAATCT
CACAGACGAAAGTCGAATATCATATTATCTTTCCCGAAATACATTTAGTT
TCGAGAATATTAACCTCAAAGGTCATACTGTCTTCAAACTATTCAGTTTT
ATTTCTTTTACGACACGACAGGATTGTTCGACATGTCGACGCAACGGAAG
TCGAAAGTGTTCTTCGTGTCAAGGATGTGGCAAGGTAAGACCGTTGCAAA
CAGTAAACTAGTAAACACAACAAAAAATGGCTCAAAACGAACAAATACGA
GATCTTTATACCATCAAAGAACCATGAAAATAATCAAAGTAGCGTCGATT
TCTTATAATCTCAGTATATAGGCAGTAAAAATTAATTTCATTCAATTCAG
ATCAAATGTGGAGTATGTGATGGACTTGGAGTTCTCCAACTGTTTTCACC
AGATGAACTGACATTCGAAAATAGCACCTCCATAACAAACCGCTCATGTC
CTCACTGTAACGGTGGAAACAGAGAGTGCAAGAAATGTCAAGGCAATGGA
AAAATCATTTGTTTTGTCTGCCAAGGTCATGGTGCTTTGAAAGTATCCAC
TCGATTAATTGTGAAGTGGTAAGTATTGTCATTCATTCTCGTTTCTTATT
TAAAAAGATATTATGTCGAATACCTCCAACCAAAGACTTTGATTTTAAAT
TCGACAGGGACTATTTAATCACAAGTAATAAAAACCTTGACAGGAAGCTG
ATGAAAGACGAGCGAATCATAGAACGATCACACATTCCCAAACAACTATT
CAAAGAAATCTCTGGCACGTCCGTCTTCCAAGAACAAAACGATCGAGTCT
ATCCTTTGCTCGATTTCCCTGAGAATGGAATCAACGATTTATCAGCCAAA
TTGATCAAAGGACACAACGAACAGCTAAAACATGCCAAAATCCGAATGCA
GGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008112XLOC_008112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014506-exon-sc0000188-1575043694:152653..152853TCONS_00014506-exon-sc0000188-1575043694:152653..152853Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1575043694:151365..151497TCONS_00014506-exon-sc0000188-1575043694:151365..151497Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1575043694:150620..151137TCONS_00014506-exon-sc0000188-1575043694:150620..151137Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1575043694:150236..150453TCONS_00014506-exon-sc0000188-1575043694:150236..150453Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1575043694:149899..150110TCONS_00014506-exon-sc0000188-1575043694:149899..150110Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1510915933:152653..152853TCONS_00014506-exon-sc0000188-1510915933:152653..152853Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1510915933:151365..151497TCONS_00014506-exon-sc0000188-1510915933:151365..151497Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1510915933:150620..151137TCONS_00014506-exon-sc0000188-1510915933:150620..151137Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1510915933:150236..150453TCONS_00014506-exon-sc0000188-1510915933:150236..150453Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1510915933:149899..150110TCONS_00014506-exon-sc0000188-1510915933:149899..150110Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1491911889:152653..152853TCONS_00014506-exon-sc0000188-1491911889:152653..152853Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1491911889:151365..151497TCONS_00014506-exon-sc0000188-1491911889:151365..151497Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1491911889:150620..151137TCONS_00014506-exon-sc0000188-1491911889:150620..151137Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1491911889:150236..150453TCONS_00014506-exon-sc0000188-1491911889:150236..150453Clytia hemisphaericaexon
TCONS_00014506-exon-sc0000188-1491911889:149899..150110TCONS_00014506-exon-sc0000188-1491911889:149899..150110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:149899..152853 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0374368	0	0.0891775	0.140938	0	0	0	0	0.533978	0	0	0.365453	0.167526	0.0962111	0.165399	0.217089	0.256763	0	0.728702	0.741742	0.287797	9.3527e-08	0	0.246057	0	0	0.146794	0.22434
Blast
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BLAST of TCONS_00014506 vs. Swiss-Prot (Human)
Match: SSUH2 (Protein SSUH2 homolog OS=Homo sapiens GN=SSUH2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.563e-16
Identity = 52/183 (28.42%), Postives = 83/183 (45.36%), Query Frame = 1 
Query:  724 NINLKGHTVF----KLFSFISFTTRQDCSTCRRNGSRKCSSCQGCGKIKCGVCDGLGVLQLFSPDELTFENSTSITNRSCPHCNG-GNRECKKCQGNGKIICFVCQGHGALKVSTRLIVKWKLMKDERIIE-RSHIPKQLFKEISGTSVFQEQNDRVYPLLDFPENGINDLSAKLIKGHNEQL 1254
            +I ++G  +F    + F     +  ++C  C   G  KCS C G G ++C  C G                  +  +R C  C G G R C  C G G   C  C+G   L    +L++ WK    E + E R + P++L  +  G ++F+++N  VYP++DFP   I+  S + I  H+  L
Sbjct:  128 DIKVQGPPMFQEDTRKFQVPHSSLVKECHKCHGRGRYKCSGCHGAGTVRCPSCCG--------------AKRKAKQSRRCQLCAGSGRRRCSTCSGRGNKTCATCKGEKKLLHFIQLVIMWKNSLFEFVSEHRLNCPRELLAKAKGENLFKDENSVVYPIVDFPLRDISLASQRGIAEHSAAL 296
The following BLAST results are available for this feature:
BLAST of TCONS_00014506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSUH24.563e-1628.42Protein SSUH2 homolog OS=Homo sapiens GN=SSUH2 PE=... [more]
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