XLOC_037307 (mRNA) -

Overview
NameXLOC_037307
Unique NameXLOC_037307
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000285_pilon:397011..404564+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037307 ID=XLOC_037307|Name=XLOC_037307|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7554bp|location=Sequence derived from alignment at sc0000285_pilon:397011..404564+ (Clytia hemisphaerica_ch_hm2_pilon)
aTGAAGTATATTGTTTTGCTTGTCTTCGTTCTGATTGGCCAATCACAGGC CAGCTCGTCAATTTCGTTACCAGAAACGAAAACATGGCGTCAATGTTTAG AAGAATTGAAATTGCAAGAAAGCATCAAAAGTTACGGTAtcgaacatttt tcaaagatggCAATGGATATACATTTCTTCAGATTATTGTATTCAAAAGc taattacacattttttataccaaCGGACAAAGGTATTCGACGATTTTCTT TTCTCAGTGAATTTGAAACTTGATCTAAACACCGGTCGCTTTATACTTGT TGCAGCAGCAGATGCACCTCCTATTGTTAGAAAtgcaattattttttatt tagaattaTTGTGAAAAGTTATAGGCCTTAGAAGGTAACTCGTTGGGGTG AAGAAACAGCGTAAAACAGACTTTTTCTATTCCGACAAGACAGTGTACCA TTAATACAAGGAATTTCTTTACTCTATTTACTGTAATGTTACTCTTCGAA CCtgtctttttttgcttttaaaggttttaacaTGAGCGAAACATATCTCA CCAATCAAACATATTTCAAAAAGCGTCGATTCATGCAATACCATATTTAT CCTGGAATTCACACCGCGCGTTCAGTCCGCGATGGTCGCGCGATCGTATC ATTTGACGGAGATAAAGCGTATGGAAACAGGTTATATGATCGGTACACAA AGAAAATTCGATTTTGGATTCAAGGATCAGAGGTTTTACAGCACAACTTG AAATTAGGTATAATTTGATTAGATAGATAGAGTCAATATTTTATCTCGAT AGCCCAGTAATGGAAGACCTTTATAGCTATTCGAtttttttCACGGGTTT CACAGCCACCCGGCTATCTGAGGACTGAACAGAAATTGTTGAAAGGAATT CGAACTGTGAGCCCGTGGTTAGAGGTGTGAACGCCTCTCAACTCTCCTTA GAATTTATCACTTAGATAGAGCAAAATGCTCATGTTTTcctttatttcta tttctacgTTTATCTCtgctatatatatatatctgaACTTCCAAGCTAGA CTTCCTCTCTATGACTTAGGCGAGCTTATACAAGTTAATCAAGGTGGGAA AAAATCGGATTTAATCTCTGTTAATAACAGCCTAGCACTATACTATACCG TTTTTCTCCTTCAGGCAACAGTATAGTGCATATCATCAATCATGCCCTTA CTCCGCCCACAAGTGATTTGTTTCAATACCTCGAATCAACACGTGGACAT TCAATTTTCCTGGATATTTTGGACAGATACCAAGTCTATTTCCAGTTCCC TTTTGGAGGAACAATCTTTGCTCCATACGATGATGCTTTTGCTAACATAC CAACGACTTATaaagataaaattttcaaaaatggtctcaACACAAGAGTA AGTACTTTGCGGGTGTTTGCTGCAGAGAATCAAATTTATATataaaacaa gagccgcaaagatgcggataaatatttcctttacaaatgttaaaataata atcgatgtcctcaaaagatttcaaagtgctttaaatctcagataacatcg tccctaaaaatttcaaaattccatttatgtaattgccagtatttacagga ttattcataagataactgtaggttcaaagctacggatcacgaaatatatc caagctgaacccgactgagaacaacaatgcagtaatcaaattggctggaa ctttaattttcgttaggcggactttaaatggattttagtattatactagc ggtcacccggcgtcgcaccgccaagtagagtgttgttgaacacatcaaaa gacctgattatataattattattttaagcgctgatttccagaaatattat ttagccaaaaagggcaaacatttaaaatgaaagaatgacaaaaaggagaa tatttcacagtaagaaaaccaaagaaaattttatatatttttaaaatgag ctgaaatattttgtattatactttcatatataaaatattgtaaaaaatgt aaaaattaacttttggagttttttgaaataatgtacgtgccaaaaagtaa aaatctttcaaaacagggaaacaatttcataaattccgacagaatgcaaa aaaaaaaaaatctcatttttatatatatatactgggaaacatttcataat ctgaaagaatatcgataggaaaaaaattcccctaacagaagccattttat gatttccaaaagcatgctacaaaaaatagtcacagcaaaagcaaaaaatg tcacatacttggaaacaatcataatttccaaaaaaatctcaaaaaataaa ataaattgtcatgccaggaaatcacttgagttttcttcattttttaaatg catgtggaagaaaatgtcgtgttcacaacaaaagttttccacgttttgaa tgcacgagtaagaaaatctccaaatttatcacaaaagtttccacgtttta aatgtacataccgtcaactgctttaacttgggacgattggtcgaaacatg ggactgtttgatatctggcctgtattttcactcacttgttaaatctcttt gacaacaaatttgttttgataacttaaccaagtttatcaatcatactttc tttcATAACATTTCACAATAActtgattggagaattagagaacgcccgcc gcctaaccgcctatcgcccgatgggattaacaaataacaagtgtgtaact tgccgtgcgagtgacgtcaaacgctccatcattttgtcactaattttttc atcttcgatCTAGACACTCGTGTGTATTCCactacgaatttttttcatat tttgatataAAAGCCTACGCAGTGCAgtgtgaaagagaaattgtgttttc ttttaatacgccgttcattaactcaaattaaatgacttttgactttggag gttcggtgaaatggtggccaaattgccgtcccatgttttagtcagatagt cccaagttggggagcagttgacggtaagaaaatctccaagttcatgacaa aagtttccacgtttaaaacgcacgtGGCAAAAGATCTCtaacagtcaggc acatcctggcaaatgaacggggtatttttcacttgcgaccattggcaaat gaacggggtcgaaaacgaaagtaacgtaatagcgccgaatacccagttta attgaaccgggttggaaatattttgcttcatttcaaggaactgcatagat gaatttttttttccatgggtcaattttgtcttcgaagattgaagaaactt ttaatgaaaaaataaagttcccagttttcttccttttttccctttttcag tttgaagttcatttttattcattttcacgcttttagcctgagacgtccta tctcatttacactgggtgacgaataccccatgcaaatgctcaccccgttc atttgccaggatgtgcctgactgtctaaattcacaactaaagttttccat gttttaaatGCACGCGgttccggatccggttatcagctttaaaatttgaa atttataaccgcaacgagttttcactatACTGTCACTAaccagcagttaa ttcattgttgtagataaaaacaccaagggaaattcaatcattaaccagtc aattttgctccatgtttaaatttttagctaaaatcagttcatcaaccatt cccattgcattgttgcattgtcggcattgcattcgttgggtgcaaacttt tttcacattacaagtatgtaatttttcaggtataacatggtcagatttat tcacagtcacttgccttcgtatgatttatgtaaatatacaatcaaaattg aagttagtttgttgtgaaagttgataaaatgtcctgtttttccaagacca agactgcaagagattgtatctctcattccagctcattccaaaccaacaga atgtaaacgaaacatcaaatccagaaaggaataccaagaaaagttcacta tcgaccattccttgtgacaatcgtacaaaaatcatgatccaattcaactc attaaagcataaaaaccaagcaaagaaaagtagcgaaagagcaaaagttg ttgtaGTCTATTtcctgccatctttgttttggcagttagaaacaaagcag tatggtccgatcaacaatacgcatCTGAAACGGCAGATATTTACAGATAT TTATCACAGACGTTTCTTGAAAacatgacgtcttccgcctcgaaaaaaga acatcctactgtttttaccgccggagcttgatttaaaaagagactcatgt acaaactcacgaaattgaccaaaaccggcgttagacttgaaggagaagaa ggagaaaaattaccgttttaacaaatatttcctatatagataggaaatat ttaaaaagtagtaTAGCAAAAATATCGACTCTAATATATTCGAGAAAGTT GTAAACTTTTGATCAAAACTTTTTATCTAATCAGTATTTGATTGATACAA GGTTGTTACGTGATAAAAACTCGAAAAGGTGATTATAGTTGAATCAATAA TCAAAATAGTTTGCTTTCTTATCGATCGTGAATAGCTGTCTTAACAATTT CGAAAATGGAGATTTGACCATCACTTCAtcacttttggctgaactttgtg TTATATTTacttttgatgacgctgagtccagtgaagtagactaggagcat ttgacttattttcaaatgaaaacattcTTCATTCTTTTATTACCTGGcaa aacaacgaaaatctggCGGGAtattttacagtccgcctaagcaaaaacAT ATCACCATATACTACCGAGCCACTTAGTCACGCCATctagtctataaaaa agctttaagtgaaCCATGGGCTGGCTCATCCTGAGATACAGCCTTAAGGG GTTAAGAACCATAGGTAGAGCATTCGAATACGGTGTGCAAGCAgacgggt cataccaaagatttcaaaCTGGTAATTAATGCCTCTCTTAATGTTCAACA ATGGAGAGAAtaatcaagggtaagtggagcgaCTAAGGACATTTACCTTT CGAAAGATAGCTATAGAAAAAGGAGCCTTTGTCTACCTCTGATTGCGATC CCAGACTTATTTACTTAATACCGTAGTGCGTTATgtatttaaaatgattt tttcctttCAGACCTTCCTTCGCGACCATATTATTCGTCACCCAATGTGT CGTGGACGACTTTACCATAAAAGCGGTTGGTCACGTGTTTATAATGATAA TGGTCAAACGTTGGAACTTTACCgagataaaaaatcaaaagattattCGT TTGTTGAGAGCGCGGGTGTTATGTCTGTGAAGCAAGTTAGAGAAGGATGG GTGTATGCTGTTAGTGAGGTTTTACTACCTAATATCGGTAAGAATAATTG CAAATAGCACAAATAAAACATATCGAGCACAATCAAGTTTCCCACttgta tttgatttgattttgggaGTAGGCTTTGTAACATATTTAAACTTTTAACT TGGCTCAACTTTATAACTTTTATGGTAATCTCATAAAAACATGCATTCTG CGTTTTATTTCCCATCTGCATCCTGTATTTGATTCAATTTTAAGTTTGAG GAATTTCAGCCCTAAAGGAGCTGGAAGACAGACTTTGTAACCAATTTAAA CTTTTAACTTGGCTCACgaactttgtaatttttgtgGTAATCTGCATTTA CCATTTACCGTTCTGCGCATGTCACGCTTCGCTGTAGCGTAGACAGAGGT GAAGGCGAGAAGATTTAAGCGACACAGTGATTATCTTTTTATACCACGAA TAGATAAAGCTTTGTCATAAATatctgctctcctacgcagATTGTTCTTC ACCTCTGTCTAACTGAAAAATGGCACTCAGGGTATCCACActagtagcgt agacaggggtgaaggaACATTTGCTTAGGCATGGAAGAAGATTTAACGAC ACAGTAATTATGTTTTATGCCACGAATAGGTAAGTGCTTTTtcgtaaaaa tctgctctcctacgcagATCTTTTTTCACCCCTGACTCTAAAGGGATGTG GCGAAATTTGATTACTTTTAGAGAGAATACATACCAGTAATCAGTGGTGT GGTTTACTTTTACGGCTATCATATGCCACCCGTTCTTTAAATTTGCTTTC TTATTTTCATAGATTCTAAACTAATGGACATACTTAAAGATCTCAAAGCA ACCAAATTTATTCAATATGTTCAAACGGCCGGATATCTACCATTATTGAA CAGTCTGGTAGAAGTTTATACTGTTTTCGCCCCTAACAACAAAGCGTTTG ATGACCTTGACAACGCTACCAAAACGAGACTAAAAGAAGATCCCGGATAC CTGAAATTACTTGTTGAATATCATTTGGTCAGAGGACGATATTCTACTGA GACAATGACCAAAAGGTTATTTTACAGAACTGTGGCAAAAAACGGAACGA TTAACTATCGCCTTTTTGCAAGTAGAGCTATGGTAAGCAACAAATATTCA GTTACAAGTCAGGAATTTTTAACCTCTCCTAAGCAAAAAAGGCGAAGCCT TAAACGTATTGCACTGCTTTCTCTGAATGATGGATTAAATCTAGCATCTT TCTTTGCTTTTGTATTACATTTTCAAATCTTCTTGCGGTAAATATTACTT CCAATCAAGCGTCTGTATAAAATCTACACACGGGCTGGAACTTATGTAGG GGATAACATTCCTCGACTGTTGTCTTTGAAGAAATCATCGATATGCCGGG GGTTTGTCGTCTATTTTATATtcgattcatgatattcatgacgtaatatt ttttccggaaagaccccggtttttaccagtagtggcaaattttatacaac ttttgtctagtttaaatttaccaccactggctaaaaccggggtatttccg tagaaaacattacgtcatgaatatcatgaattgcatTCTCATGATTAATT AGAATGTTCTCATTTTACTAGGGAAGCATTCAAAAATCACGGATAATTAA TAACAATCAAATGGCTTTAAACGGCATTTGTCACCTCATCAACAAAGTTC TCATACCCCCTGAAATAACAacctatgacgtcatcaatgataTTCGAAGT TTGAGACTGATATCAAAGATGTATGACAAATTCAGTGAAGAGTTTAGACA AGTTttggaaaatgaagataaagCCTATACATTGTTCTTACCGACAAATC AAGCTGTGAAAGCCTTTTTCTACCAACAGAACCCGGTCAATGAAACCGAT GCTATTCAAAAGTTGGAAATTCTAATCCGGAATCAACATTATGTCACTCA ACCTTTGATTATATTAGAAGACGACAATCAGCCAGCTATTCCAATAAAAT CgggtaatttcccgattttagGGTCCAGTTCCGATCGGGAAACACGGATT TTGACATTGAGGAAACGAGAAAAACTAGAGGGATACTTGACACCGTATTT CATTGAGGAATTCAAGTCCTCATTGGTTCAATTAAATCACGTGACCAGAA ATGGAGTAATCCAATTGGTTGATTCAGTGTTCGatgggaaatcgaaagta caAGTTACAAAAGAGATGTGGAAATCTTTACAAaaacgttggaaagataa ttga

Coding sequence (CDS) from alignment at sc0000285_pilon:397011..404564+

>XLOC_037307 ID=XLOC_037307|Name=XLOC_037307|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3756bp|location=Sequence derived from alignment at sc0000285_pilon:397011..404564+ (Clytia hemisphaerica_ch_hm2_pilon)
aTGAAGTATATTGTTTTGCTTGTCTTCGTTCTGATTGGCCAATCACAGGC
CAGCTCGTCAATTTCGTTACCAGAAACGAAAACATGGCGTCAATGTTTAG
AAGAATTGAAATTGCAAGAAAGCATCAAAAGTTACGGTAtcgaacatttt
tcaaagatggCAATGGATATACATTTCTTCAGATTATTGTATTCAAAAGc
taattacacattttttataccaaCGGACAAAGaTGAAGTATATTGTTTTG
CTTGTCTTCGTTCTGATTGGCCAATCACAGGCCAGCTCGTCAATTTCGTT
ACCAGAAACGAAAACATGGCGTCAATGTTTAGAAGAATTGAAATTGCAAG
AAAGCATCAAAAGTTACGGTAtcgaacatttttcaaagatggCAATGGAT
ATACATTTCTTCAGATTATTGTATTCAAAAGctaattacacattttttat
accaaCGGACAAAGgttttaacaTGAGCGAAACATATCTCACCAATCAAA
CATATTTCAAAAAGCGTCGATTCATGCAATACCATATTTATCCTGGAATT
CACACCGCGCGTTCAGTCCGCGATGGTCGCGCGATCGTATCATTTGACGG
AGATAAAGCGTATGGAAACAGGTTATATGATCGGTACACAAAGAAAATTC
GATTTTGGATTCAAGGATCAGAGGTTTTACAGCACAACTTGAAATTAGgt
tttaacaTGAGCGAAACATATCTCACCAATCAAACATATTTCAAAAAGCG
TCGATTCATGCAATACCATATTTATCCTGGAATTCACACCGCGCGTTCAG
TCCGCGATGGTCGCGCGATCGTATCATTTGACGGAGATAAAGCGTATGGA
AACAGGTTATATGATCGGTACACAAAGAAAATTCGATTTTGGATTCAAGG
ATCAGAGGTTTTACAGCACAACTTGAAATTAGGCAACAGTATAGTGCATA
TCATCAATCATGCCCTTACTCCGCCCACAAGTGATTTGTTTCAATACCTC
GAATCAACACGTGGACATTCAATTTTCCTGGATATTTTGGACAGATACCA
AGTCTATTTCCAGTTCCCTTTTGGAGGAACAATCTTTGCTCCATACGATG
ATGCTTTTGCTAACATACCAACGACTTATaaagataaaattttcaaaaat
ggtctcaACACAAGAGCAACAGTATAGTGCATATCATCAATCATGCCCTT
ACTCCGCCCACAAGTGATTTGTTTCAATACCTCGAATCAACACGTGGACA
TTCAATTTTCCTGGATATTTTGGACAGATACCAAGTCTATTTCCAGTTCC
CTTTTGGAGGAACAATCTTTGCTCCATACGATGATGCTTTTGCTAACATA
CCAACGACTTATaaagataaaattttcaaaaatggtctcaACACAAGAAC
CTTCCTTCGCGACCATATTATTCGTCACCCAATGTGTCGTGGACGACTTT
ACCATAAAAGCGGTTGGTCACGTGTTTATAATGATAATGGTCAAACGTTG
GAACTTTACCgagataaaaaatcaaaagattattCGTTTGTTGAGAGCGC
GGGTGTTATGTCTGTGAAGCAAGTTAGAGAAGGATGGGTGTATGCTGTTA
GTGAGGTTTTACTACCTAATATCGACCTTCCTTCGCGACCATATTATTCG
TCACCCAATGTGTCGTGGACGACTTTACCATAAAAGCGGTTGGTCACGTG
TTTATAATGATAATGGTCAAACGTTGGAACTTTACCgagataaaaaatca
aaagattattCGTTTGTTGAGAGCGCGGGTGTTATGTCTGTGAAGCAAGT
TAGAGAAGGATGGGTGTATGCTGTTAGTGAGGTTTTACTACCTAATATCG
ATTCTAAACTAATGGACATACTTAAAGATCTCAAAGCAACCAAATTTATT
CAATATGTTCAAACGGCCGGATATCTACCATTATTGAACAGTCTGGTAGA
AGTTTATACTGTTTTCGCCCCTAACAACAAAGCGTTTGATGACCTTGACA
ACGCTACCAAAACGAGACTAAAAGAAGATCCCGGATACCTGAAATTACTT
GTTGAATATCATTTGGTCAGAGGACGATATTCTACTGAGACAATGACCAA
AAGGTTATTTTACAGAACTGTGGCAAAAAACGGAACGATTAACTATCGCC
TTTTTGCAAGTAGAGCTATGATTCTAAACTAATGGACATACTTAAAGATC
TCAAAGCAACCAAATTTATTCAATATGTTCAAACGGCCGGATATCTACCA
TTATTGAACAGTCTGGTAGAAGTTTATACTGTTTTCGCCCCTAACAACAA
AGCGTTTGATGACCTTGACAACGCTACCAAAACGAGACTAAAAGAAGATC
CCGGATACCTGAAATTACTTGTTGAATATCATTTGGTCAGAGGACGATAT
TCTACTGAGACAATGACCAAAAGGTTATTTTACAGAACTGTGGCAAAAAA
CGGAACGATTAACTATCGCCTTTTTGCAAGTAGAGCTATGGGAAGCATTC
AAAAATCACGGATAATTAATAACAATCAAATGGCTTTAAACGGCATTTGT
CACCTCATCAACAAAGTTCTCATACCCCCTGAAATAACAacctatgacgt
catcaatgataTTCGAAGTTTGAGACTGATATCAAAGATGTATGACAAAT
TCAGTGAAGAGTTTAGACAAGTTttggaaaatgaagataaagCCTATACA
TTGTTCTTACCGACAAATCAAGCTGTGAAAGCCTTTTTCTACCAACAGAA
CCCGGTCAATGAAACCGATGCTATTCAAAAGTTGGAAATTCTAATCCGGA
ATCAACATTATGTCACTCAACCTTTGATTATATTAGAAGACGACAATCAG
CCAGCTATTCCAATAAAATCgggtaatttcccgattttagGGTCCAGTTC
CGATCGGGAAACACGGATTTTGACATTGAGGAAACGAGAAAAACTAGAGG
GATACTTGACACCGTATTTCATTGAGGAATTCAAGTCCTCATTGGTTCAA
TTAAATCACGTGACCAGAAATGGAGTAATCCAATTGGTTGATTCAGTGTT
CGatgggaaatcgaaagtacaAGTTACAAAAGAGATGTGGAAATCTTTAC
AAaaacgttggaaagataattgaGGAAGCATTCAAAAATCACGGATAATT
AATAACAATCAAATGGCTTTAAACGGCATTTGTCACCTCATCAACAAAGT
TCTCATACCCCCTGAAATAACAacctatgacgtcatcaatgataTTCGAA
GTTTGAGACTGATATCAAAGATGTATGACAAATTCAGTGAAGAGTTTAGA
CAAGTTttggaaaatgaagataaagCCTATACATTGTTCTTACCGACAAA
TCAAGCTGTGAAAGCCTTTTTCTACCAACAGAACCCGGTCAATGAAACCG
ATGCTATTCAAAAGTTGGAAATTCTAATCCGGAATCAACATTATGTCACT
CAACCTTTGATTATATTAGAAGACGACAATCAGCCAGCTATTCCAATAAA
ATCgggtaatttcccgattttagGGTCCAGTTCCGATCGGGAAACACGGA
TTTTGACATTGAGGAAACGAGAAAAACTAGAGGGATACTTGACACCGTAT
TTCATTGAGGAATTCAAGTCCTCATTGGTTCAATTAAATCACGTGACCAG
AAATGGAGTAATCCAATTGGTTGATTCAGTGTTCGatgggaaatcgaaag
tacaAGTTACAAAAGAGATGTGGAAATCTTTACAAaaacgttggaaagat
aattga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_037307XLOC_037307-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000285_pilongenomesc0000285_pilon:397011..404564 +
Properties
Property NameValue
Aaloc1246-1878:6922
Aaloc928-1245:6115
Aaloc700-924:5112
Aaloc469-699:1167
Aaloc235-465:526
Aaloc1-231:1