|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014513 ID=TCONS_00014513|Name=TCONS_00014513|organism=Clytia hemisphaerica|type=transcript|length=2242bp
AACGTGGTAGTGGTGGTCTAAGATTGAAAATACCTGTCATTAATGCATTA
ATCCTAGAACTATGACCAACTGGTTTTCCTTCAAATGGATTGTGCTATGC
TGAAATTGCCGATATGTAGGTGCATATATAGTGTTGTATTGCAAGCCTTT
ATGAAACAATTCCGCCAAGAAGTCAAGAATGAATATTTTATAGAGCAAGA
CACTGGATCAACCTTCCGTTGACGAGCCCAGCTAGACCATTTACCCCAGG
CCGACTCATAATGAGAGATTGAACTCTTCCTTCTGGCATTTGAAATAAGG
TTGGCTGCTTTGCCTGAAATTCCCTCTGCTTCCAGTGTTTTCCTGAAATT
CGCCAGGCCGCTAGAGTTAGTGTCCCTTCTCGTGTCAGAGGATGACACTC
TCCTTGAGGATTTGTCAACATAGTTCTGAACGGTTGGATCAGTAACGGTC
TCTGGACGCACATTTACATCAGTTTTGTATACCATGACTGACCTTGCCAC
ACCGGGGCTATGAGAATCATTTCTGCCTGTTCCTGAGCTACCTTGTTTAG
CACTTGGCCAATCAGGCAAAACGGAGGAAAAGCATACATCAGATGACCTC
CCCAGGCCATTTGAAAGGCATCTACCCTGATACAAAACGGGTCTGGTTTC
CACGAAACATACTGATGAAGTTGATGCAAAGAGATCTACTTGTGGATAAC
CTAGCCTCCTTGTGATCTGTCTGAAAACTTCTTGGTCTAACTTCCACTCG
CTGGAGTCCTTTACATTTCTTGACTCCCAATCTGCTGTCTTGTTTAGCTT
TCCAGGGAGGTATTCTATAGTAATTTTGATCCCCCTGGACCGTAGATAAT
CCCACATCTCCTGACTCAATTATAGCAACACCTTGTTTTGGGTACCCCCC
CTATCTTCACTATTTAGGATAGAGCTGTGGTGTTGTCCATCTGAAGATGG
ATACACTGTACCTTTGAAGGGGCCCGTGTAAATGTTTTTATTGCTAACAG
AGCTGCTTTCAATTCTAGAATGTTTATATGCAGTCCACTCTCTTCCATTG
ACCATGGCCCTCTTGTTTGCTTCCCCTGGCAATCTACTCACCAGCCTTTC
TTGGATGCATCTGTAGACATGACCAAGTCTGGATTTTTCATTAACAGAGA
CTTTCCATTTGACAACTTTAGGTTCTCCTTCCACCACTCTAACTCTAGTC
TCACCTTCTCCGACAGGGTTATCTCGGACTGGTAAGAACCTCTTATCAAA
GCTTTTATCTGGCATctttgaatctttctgtaatgcAGTGGGGCCGCCAA
CACTGCTACCGCTGATGATGTCAACCTCCCCAGGAGTTTGGTTAGGTCCA
TCACACTCACTTTTGTCTGGGACAGAATCTGTTCGCACTGGCTGATgatt
ttctctattttgtcCGATGGCAAAGTCAACTCCATCTTCACTGAATTCAC
TGTCACACCTAAGAACTCCAACTCCTGGCATGGTTCTAGATGAGATTTCT
GAATGTTTATGATGAAACTTAGAGCTGAAGGAGAAATATCAAGGAGTCTC
TTGCCATCAGAATCTCCTCCCGAGAACTCCCCATAACCAAAATGTCGTCC
AGATAGTCCAGATAGAACCGAATATTTAGTCTTCTCAAAATAGTTATAGG
AACTTTCATTAGTTTGGTGAATAACCTGGGTGCTGGACCAAGACCGAACG
AAACACATACAGAGGAACTGATATAACTTGCCTTTCCATTCGAACCTGAC
AAATCTCTTGTATTGTTTCCCTAATGCGACTGAAAAGTAAGGGTCCTTCA
GATCTAACTTGATCATCAAATCTCCTGGACATAATCTCCTTGTCCTTCTT
CTTCACCGTAAAAAGAGTACTCAAGACCTGACCTGGAGATGGAACAGTCT
CTTCTATGGCCCCTTTCTTCAATAGGCTCTCCACCTCTAGATCTATAATC
ATCTCCTCCTCTTTGTTCATTCTCAATGGACGAGGAGGCATTTTCTGAAC
TGGAGTTTCCCAGTGAAAAAAAGGAATCTTGTAACCCTGAATAAGGTCTA
GAATAGTCGGATCGTTTGTCACCTTTTCCCAGTTTCTTAAGAAATACTTC
AGCCTGCCCGCTAATTCCAAGACCGAATGTGTTGAACCCCCAAAAAGACC
TTTCAAAACTGGATGAACATGGATAAAACTTTCGGTTGAAACCACTTGAA
ACAgaggaaattttaaaattcttatcaCTGCCACGGTTGGTG Run BLAST on NCBI protein sequence of TCONS_00014513-protein >TCONS_00014513-protein ID=TCONS_00014513-protein|Name=TCONS_00014513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MIKLDLKDPYFSVALGKQYKRFVRFEWKGKLYQFLCMCFVRSWSSTQVIH
QTNESSYNYFEKTKYSVLSGLSGRHFGYGEFSGGDSDGKRLLDISPSALS
FIINIQKSHLEPCQELEFLGVTVNSVKMELTLPSDKIEKIISQCEQILSQ
TKVSVMDLTKLLGRLTSSAVAVLAAPLHYRKIQRCQIKALIRGSYQSEIT
LSEKVRLELEWWKENLKLSNGKSLLMKNPDLVMSTDASKKGW Run BLAST on NCBI transcript from alignment at sc0000188:57877..60118 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014513 ID=TCONS_00014513|Name=TCONS_00014513|organism=Clytia hemisphaerica|type=transcript|length=2242bp|location=Sequence derived from alignment at sc0000188:57877..60118 (Clytia hemisphaerica)
CACCAACCGTGGCAGtgataagaattttaaaatttcctcTGTTTCAAGTG
GTTTCAACCGAAAGTTTTATCCATGTTCATCCAGTTTTGAAAGGTCTTTT
TGGGGGTTCAACACATTCGGTCTTGGAATTAGCGGGCAGGCTGAAGTATT
TCTTAAGAAACTGGGAAAAGGTGACAAACGATCCGACTATTCTAGACCTT
ATTCAGGGTTACAAGATTCCTTTTTTTCACTGGGAAACTCCAGTTCAGAA
AATGCCTCCTCGTCCATTGAGAATGAACAAAGAGGAGGAGATGATTATAG
ATCTAGAGGTGGAGAGCCTATTGAAGAAAGGGGCCATAGAAGAGACTGTT
CCATCTCCAGGTCAGGTCTTGAGTACTCTTTTTACGGTGAAGAAGAAGGA
CAAGGAGATTATGTCCAGGAGATTTGATGATCAAGTTAGATCTGAAGGAC
CCTTACTTTTCAGTCGCATTAGGGAAACAATACAAGAGATTTGTCAGGTT
CGAATGGAAAGGCAAGTTATATCAGTTCCTCTGTATGTGTTTCGTTCGGT
CTTGGTCCAGCACCCAGGTTATTCACCAAACTAATGAAAGTTCCTATAAC
TATTTTGAGAAGACTAAATATTCGGTTCTATCTGGACTATCTGGACGACA
TTTTGGTTATGGGGAGTTCTCGGGAGGAGATTCTGATGGCAAGAGACTCC
TTGATATTTCTCCTTCAGCTCTAAGTTTCATCATAAACATTCAGAAATCT
CATCTAGAACCATGCCAGGAGTTGGAGTTCTTAGGTGTGACAGTGAATTC
AGTGAAGATGGAGTTGACTTTGCCATCGgacaaaatagagaaaatcATCA
GCCAGTGCGAACAGATTCTGTCCCAGACAAAAGTGAGTGTGATGGACCTA
ACCAAACTCCTGGGGAGGTTGACATCATCAGCGGTAGCAGTGTTGGCGGC
CCCACTgcattacagaaagattcaaagATGCCAGATAAAAGCTTTGATAA
GAGGTTCTTACCAGTCCGAGATAACCCTGTCGGAGAAGGTGAGACTAGAG
TTAGAGTGGTGGAAGGAGAACCTAAAGTTGTCAAATGGAAAGTCTCTGTT
AATGAAAAATCCAGACTTGGTCATGTCTACAGATGCATCCAAGAAAGGCT
GGTGAGTAGATTGCCAGGGGAAGCAAACAAGAGGGCCATGGTCAATGGAA
GAGAGTGGACTGCATATAAACATTCTAGAATTGAAAGCAGCTCTGTTAGC
AATAAAAACATTTACACGGGCCCCTTCAAAGGTACAGTGTATCCATCTTC
AGATGGACAACACCACAGCTCTATCCTAAATAGTGAAGATAGGGGGGGTA
CCCAAAACAAGGTGTTGCTATAATTGAGTCAGGAGATGTGGGATTATCTA
CGGTCCAGGGGGATCAAAATTACTATAGAATACCTCCCTGGAAAGCTAAA
CAAGACAGCAGATTGGGAGTCAAGAAATGTAAAGGACTCCAGCGAGTGGA
AGTTAGACCAAGAAGTTTTCAGACAGATCACAAGGAGGCTAGGTTATCCA
CAAGTAGATCTCTTTGCATCAACTTCATCAGTATGTTTCGTGGAAACCAG
ACCCGTTTTGTATCAGGGTAGATGCCTTTCAAATGGCCTGGGGAGGTCAT
CTGATGTATGCTTTTCCTCCGTTTTGCCTGATTGGCCAAGTGCTAAACAA
GGTAGCTCAGGAACAGGCAGAAATGATTCTCATAGCCCCGGTGTGGCAAG
GTCAGTCATGGTATACAAAACTGATGTAAATGTGCGTCCAGAGACCGTTA
CTGATCCAACCGTTCAGAACTATGTTGACAAATCCTCAAGGAGAGTGTCA
TCCTCTGACACGAGAAGGGACACTAACTCTAGCGGCCTGGCGAATTTCAG
GAAAACACTGGAAGCAGAGGGAATTTCAGGCAAAGCAGCCAACCTTATTT
CAAATGCCAGAAGGAAGAGTTCAATCTCTCATTATGAGTCGGCCTGGGGT
AAATGGTCTAGCTGGGCTCGTCAACGGAAGGTTGATCCAGTGTCTTGCTC
TATAAAATATTCATTCTTGACTTCTTGGCGGAATTGTTTCATAAAGGCTT
GCAATACAACACTATATATGCACCTACATATCGGCAATTTCAGCATAGCA
CAATCCATTTGAAGGAAAACCAGTTGGTCATAGTTCTAGGATTAATGCAT
TAATGACAGGTATTTTCAATCTTAGACCACCACTACCACGTT Coding sequence (CDS) from alignment at sc0000188:57877..60118 >TCONS_00014513 ID=TCONS_00014513|Name=TCONS_00014513|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at sc0000188:57877..60118 (Clytia hemisphaerica)
ATGATCAAGTTAGATCTGAAGGACCCTTACTTTTCAGTCGCATTAGGGAA
ACAATACAAGAGATTTGTCAGGTTCGAATGGAAAGGCAAGTTATATCAGT
TCCTCTGTATGTGTTTCGTTCGGTCTTGGTCCAGCACCCAGGTTATTCAC
CAAACTAATGAAAGTTCCTATAACTATTTTGAGAAGACTAAATATTCGGT
TCTATCTGGACTATCTGGACGACATTTTGGTTATGGGGAGTTCTCGGGAG
GAGATTCTGATGGCAAGAGACTCCTTGATATTTCTCCTTCAGCTCTAAGT
TTCATCATAAACATTCAGAAATCTCATCTAGAACCATGCCAGGAGTTGGA
GTTCTTAGGTGTGACAGTGAATTCAGTGAAGATGGAGTTGACTTTGCCAT
CGgacaaaatagagaaaatcATCAGCCAGTGCGAACAGATTCTGTCCCAG
ACAAAAGTGAGTGTGATGGACCTAACCAAACTCCTGGGGAGGTTGACATC
ATCAGCGGTAGCAGTGTTGGCGGCCCCACTgcattacagaaagattcaaa
gATGCCAGATAAAAGCTTTGATAAGAGGTTCTTACCAGTCCGAGATAACC
CTGTCGGAGAAGGTGAGACTAGAGTTAGAGTGGTGGAAGGAGAACCTAAA
GTTGTCAAATGGAAAGTCTCTGTTAATGAAAAATCCAGACTTGGTCATGT
CTACAGATGCATCCAAGAAAGGCTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014513-exon-sc0000188-1491911889:57877..60118 | TCONS_00014513-exon-sc0000188-1491911889:57877..60118 | Clytia hemisphaerica | exon |
| TCONS_00014513-exon-sc0000188-1510915933:57877..60118 | TCONS_00014513-exon-sc0000188-1510915933:57877..60118 | Clytia hemisphaerica | exon |
| TCONS_00014513-exon-sc0000188-1575043694:57877..60118 | TCONS_00014513-exon-sc0000188-1575043694:57877..60118 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000188 | supercontig | sc0000188:57877..60118 . |
Blast
The following BLAST results are available for this feature:
|
