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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014444 ID=TCONS_00014444|Name=TCONS_00014444|organism=Clytia hemisphaerica|type=transcript|length=899bp
TTCGAATGCTTGAATTAAGATAGAGGGCATGGCTATAAAAAGAGAGGAAA
AGGCTTTTAAGAATCATTCAATTCTGAAGATCACCAAAGGAGTTCAAAAT
TTGTTCAATATTGAACTATATATCAAGAGGAAGATTTACTAGTGCGAGAA
CCAAGAAAGTGAAAGATGAAAGTTCTTTGCTTGGTATTACTTTGTTTTTT
CATATCAGCTGCAAAAGCTAACCAAAATGCAAATGAAAAATGGCATGACG
GCAAACTTGCGTCCAGATTGAGATTTGAAAATGTCGAAGATCCCATCACA
AACGTGGACAAAGAAGATCAAgaagaagatttgaaaaatgatgataaaga
aaatgaagaagaagaaaatgatgatgataatgaagaagaaaatgaagacg
acGTGGATAACAATGACAATGACGATGACGATGACGATGACGAAAGAAAT
GATCGCGAGGTTCAAATTACCGACACAGATAATGCATTAAAGtGCAAAAG
GATCCCATAGTTGGTGGATTGCTTGTTGGTGCAGCAAGTGCCTTGAAATT
TCGCCGTGCTACTGGTTTCCGAGTACGTCGAACCTTCCGTCGAGTTCGAC
GTGCGTTTAGAAGGTCTCGACGTGGAGGACGTCGATCCAGACGCAACAGA
AGAGGTGGACGTCGTGGAGGTAGAAGAGGACGCCGTGGTGGAAGACGTGG
ACGCAGAGGTCGACGTGGACGTGGACGGGGAAGACGTGGAAGACGATGGG
GATAATCTTgagacttgaagaaaaattttactacGGCTGAATATGATTAT
TGATTCATACTAgggttttatatttttattttatatgataattctttttt
gtttgctctgttagcctatttcataggattcatgCATATGTTACATGCT Run BLAST on NCBI protein sequence of TCONS_00014444-protein >TCONS_00014444-protein ID=TCONS_00014444-protein|Name=TCONS_00014444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MKVLCLVLLCFFISAAKANQNANEKWHDGKLASRLRFENVEDPITNVDKE
DQEEDLKNDDKENEEEENDDDNEEENEDDVDNNDNDDDDDDDERNDREVQ
ITDTDNALKCKRIP Run BLAST on NCBI transcript from alignment at sc0000187:462377..463769- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014444 ID=TCONS_00014444|Name=TCONS_00014444|organism=Clytia hemisphaerica|type=transcript|length=1393bp|location=Sequence derived from alignment at sc0000187:462377..463769- (Clytia hemisphaerica)
TTCGAATGCTTGAATTAAGATAGAGGGCATGGCTATAAAAAGAGAGGAAA
AGGCTTTTAAGAATCATTCAATTCTGAAGATCACCAAAGGAGTTCAAAAT
TTGTTCAATATTGAACTATATATCAAGAGGAAGATTTACTAGTGCGAGAA
CCAAGAAAGTGAAAGATGAAAGTTCTTTGCTTGGTATTACTTTGTTTTTT
CATATCAGCTGCAAAAGGTATTCCTTAATTCAATTTTTCTCTCTTAACCA
ATAATAAACGGATAATGGCCATTTGAACTACTCATTTACGTTGCCTTCCA
GAAAAGTTACAATTGTTCGGGAGGTTAAATTGCGGACTGCTCTCATCTAG
ATTTTATGTTGAAGTAATTAATTTTCAAAGTCATGATTTGTTTTACTTAG
CTAACCAAAATGCAAATGAAAAATGGCATGACGGCAAACTTGCGTCCAGA
TTGAGATTTGAAAATGTCGAAGATCCCATCACAAACGTGGACAAAGAAGA
TCAAGAAGAAGATTTGAAAAATGATGATAAAGAAAATGAAGAAGAAGAAA
ATGATGATGATAATGAAGAAGAAAATGAAGACGACGTGGATAACAATGAC
AATGACGATGACGATGACGATGACGAAAGAAATGATCGCGAGGTTCAAAT
TACCGACACAGATAATGCATTAAAGGTAATGAAAGCTTTGGAAGGTCAAA
TAGGAAAATACCATCTAGTAGAAAAAGGGGCTCAGATCCTTTCGAATATC
TCGAACACAATCTACATAAGCTTATTTCCACTTTCTTAGAAAAAGACAAA
ACAAAAGAATATTTTTCTCACAATAAATAAATTTTGTAAAGCCAGAAAGT
AAATGATTTGATAATAAAGCCAGTTCGAGGAAAATTGCTAAATTCATTGT
AATAGGACACATTTTCAAAAACCAAATATTGCCTGTTTTATTAAAAGACG
CTGTTCCTAAAATAAAAAGTTTTCTTTTATAAATAGTGCAAAAGGATCCC
ATAGTTGGTGGATTGCTTGTTGGTGCAGCAAGTGCCTTGAAATTTCGCCG
TGCTACTGGTTTCCGAGTACGTCGAACCTTCCGTCGAGTTCGACGTGCGT
TTAGAAGGTCTCGACGTGGAGGACGTCGATCCAGACGCAACAGAAGAGGT
GGACGTCGTGGAGGTAGAAGAGGACGCCGTGGTGGAAGACGTGGACGCAG
AGGTCGACGTGGACGTGGACGGGGAAGACGTGGAAGACGATGGGGATAAT
CTTGAGACTTGAAGAAAAATTTTACTACGGCTGAATATGATTATTGATTC
ATACTAGGGTTTTATATTTTTATTTTATATGATAATTCTTTTTTGTTTGC
TCTGTTAGCCTATTTCATAGGATTCATGCATATGTTACATGCT Coding sequence (CDS) from alignment at sc0000187:462377..463769- >TCONS_00014444 ID=TCONS_00014444|Name=TCONS_00014444|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at sc0000187:462377..463769- (Clytia hemisphaerica)
TGCAAAAGGATCCCATAGCTAACCAAAATGCAAATGAAAAATGGCATGAC
GGCAAACTTGCGTCCAGATTGAGATTTGAAAATGTCGAAGATCCCATCAC
AAACGTGGACAAAGAAGATCAAGAAGAAGATTTGAAAAATGATGATAAAG
AAAATGAAGAAGAAGAAAATGATGATGATAATGAAGAAGAAAATGAAGAC
GACGTGGATAACAATGACAATGACGATGACGATGACGATGACGAAAGAAA
TGATCGCGAGGTTCAAATTACCGACACAGATAATGCATTAAAGATGAAAG
TTCTTTGCTTGGTATTACTTTGTTTTTTCATATCAGCTGCAAAAGTGCAA
AAGGATCCCATAGCTAACCAAAATGCAAATGAAAAATGGCATGACGGCAA
ACTTGCGTCCAGATTGAGATTTGAAAATGTCGAAGATCCCATCACAAACG
TGGACAAAGAAGATCAAGAAGAAGATTTGAAAAATGATGATAAAGAAAAT
GAAGAAGAAGAAAATGATGATGATAATGAAGAAGAAAATGAAGACGACGT
GGATAACAATGACAATGACGATGACGATGACGATGACGAAAGAAATGATC
GCGAGGTTCAAATTACCGACACAGATAATGCATTAAAGATGAAAGTTCTT
TGCTTGGTATTACTTTGTTTTTTCATATCAGCTGCAAAAGTGCAAAAGGA
TCCCATAGCTAACCAAAATGCAAATGAAAAATGGCATGACGGCAAACTTG
CGTCCAGATTGAGATTTGAAAATGTCGAAGATCCCATCACAAACGTGGAC
AAAGAAGATCAAGAAGAAGATTTGAAAAATGATGATAAAGAAAATGAAGA
AGAAGAAAATGATGATGATAATGAAGAAGAAAATGAAGACGACGTGGATA
ACAATGACAATGACGATGACGATGACGATGACGAAAGAAATGATCGCGAG
GTTCAAATTACCGACACAGATAATGCATTAAAGATGAAAGTTCTTTGCTT
GGTATTACTTTGTTTTTTCATATCAGCTGCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014444-exon-sc0000187-1575043694:463553..463769 | TCONS_00014444-exon-sc0000187-1575043694:463553..463769 | Clytia hemisphaerica | exon |
| TCONS_00014444-exon-sc0000187-1575043694:463095..463369 | TCONS_00014444-exon-sc0000187-1575043694:463095..463369 | Clytia hemisphaerica | exon |
| TCONS_00014444-exon-sc0000187-1575043694:462377..462783 | TCONS_00014444-exon-sc0000187-1575043694:462377..462783 | Clytia hemisphaerica | exon |
| TCONS_00014444-exon-sc0000187-1510915933:463553..463769 | TCONS_00014444-exon-sc0000187-1510915933:463553..463769 | Clytia hemisphaerica | exon |
| TCONS_00014444-exon-sc0000187-1510915933:463095..463369 | TCONS_00014444-exon-sc0000187-1510915933:463095..463369 | Clytia hemisphaerica | exon |
| TCONS_00014444-exon-sc0000187-1510915933:462377..462783 | TCONS_00014444-exon-sc0000187-1510915933:462377..462783 | Clytia hemisphaerica | exon |
| TCONS_00014444-exon-sc0000187-1491911889:463553..463769 | TCONS_00014444-exon-sc0000187-1491911889:463553..463769 | Clytia hemisphaerica | exon |
| TCONS_00014444-exon-sc0000187-1491911889:463095..463369 | TCONS_00014444-exon-sc0000187-1491911889:463095..463369 | Clytia hemisphaerica | exon |
| TCONS_00014444-exon-sc0000187-1491911889:462377..462783 | TCONS_00014444-exon-sc0000187-1491911889:462377..462783 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:462377..463769 - |
Blast
The following BLAST results are available for this feature:
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