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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000120_pilon:572981..577080+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_037258 ID=XLOC_037258|Name=XLOC_037258|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4100bp|location=Sequence derived from alignment at sc0000120_pilon:572981..577080+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATAAAAACTGGACTGTTTTGGTTGCTGACTGCAACATTTGCGACCGC
TTTTTATGATGAAAAGCAATTTGCTGATTTACGTAAACAGTATGGTTGGG
TGGATATCCCAGAAGTCAACATGAAGATCGTAAGTCAATTGAAAGAAATT
CTATTATTAAAAATATACCCCGAAACTTCCAATTCTTTTGATGCTTTGTG
ACTCTCTAAATGATTGTTGTCGAATAAACTTAGGCTCTGAACGTATCTCT
CCCTCCGTTTatatcaaaagtttttcaatcttTACACCCCTGTACCCGAC
CTGTACCAACCCATTCGCTTGCCGGAAACTCGAGTTTGCTGTGTTTGGAG
ATCGACTTAGCCCGGAAAAACCCATAAATAACTCGCAAAGTCAACCACTA
CCGGTTTATTAATACAACAAACAGTATTTTTCCCACTTTTCGTTCTTTCC
ACCatacaatcctaaaaacttttgtttttcaaatcttcTATAGGATGAAA
TGATTCGATATCATGGATATCCAGTTGAAATGCATAATGTTATAACTGAA
GACCACTACGTACTGAGCGTTCAACGTATACCTTCTAGTCCCAACTACAa
aggaccaatcaaaagcgTTCCTGTTTTTCTTCAACATGGTTTGTTAGATT
CTGCTACCACATGGGTGATCAATGGACCTaaaaaaaGTTTAGCATACGTT
TTAGCTGATCAAGGGTAAGATCTCTAGCTTGTACCCAGCCCCTTGGTTTt
caattttgtatcatattgatAGCAGTTTATCCCATCCACCTATCAAAATA
GATGAACTTGCTTTAGGGCACAAGACAGACTTATCAAACTGTTTTGATTT
TAAGTAGCTTTATTTAGGTGAATTCTGTGAAACGTGTTTGACAGGGAAAA
TTTAAAGTTTCGGGCTCACCTTTAAAATCCAAGATGACCTATCCCAAAAC
TTTGCATTGGTGACCATTCATACTTTTGGACGATTTCAGGTAAAATGTCT
TCTTTATGATTGCGCtttttttttGCAGTTATGATGTTTGGCTTGGTAAC
AGTCGTGGAAACTTCTATTCAATGACAAACACTAAGATACCAAATACTGA
CTCCAAGTTTTGGGATTTCACGTAAGAATTGTCAAGATTCGATATTATAC
CGGCCAGGGCAAACCAATCCAATCATCCAATGCATTATTTCCCAGCGTTG
AATGAACTTGGATAACATTGTAATATTCAATATTGTAACATTCAAAACGT
TTTcgaacatccctgtctcagtaaatttttttcatcGATTCAAATGAAAT
GAAGGGCTGAAAGTCTAGCaccttgaattttttcactttttgctcTACGT
CACAAAATctgtctgaatcacagacctctgcAAAACTGCTTGCTGCAATA
CTTTAGAGAGTTTCTCTTAACTTTGGACAATTTTCTAGAGTGAGAGGTTC
TTGATTCTGTTTTGTGGTTTAGATtcgagatgccttggagttttttacaa
gatacttcactaattggtcatttaaagtgatataGATGatgcattcttta
gaaaaagtaatgagattcttttattacatcttaacgaccaaccaaatcaa
ataagagcttgtaaaaactccagcttgtcccttaGATTCAAAAAGAAATC
TCCTGAAATTCATAGGTTACTAAACTTCCTTGATTTGTGTGTTTTggatt
tttagttttgaagagATGGCAAAATATGATGTACCAGCTTGTATCAATTA
CATCCAAAAAATGTCAAACGCAAGTAAAATAAACTACGTCGGACACTCAC
AAGGTAAGCCATATCAATCGGACACACTTACAGTAGCGTGGCTGTGGCAA
GGGACAGAGGGCAACTATCTCCCTAAGCAACTAATTTTATTGGGGTAGCC
GAAAGACTAGGGGTGAAAAAAGTGCGAAAATTTGACACTAGTCGTTCTTT
ATTTCTGAGACAGAAATTCGAATTTTAAGTAGCTGGTCCGGCCATTAAAA
AGTTACCAGGATTCCTCACATTTGATTTAAATCCTTTATCCAATTTCAAA
CTGTAACAGCGTGTGTTCCAATCCCACAAAAGCTGCTTTACTAAAGTGAT
TACAGCATTGTCATCTATTTATCAATTCTAGGTACAACAATGGCATTCAT
TGAATTCAGCAGGAACCAAGATCTagcaaagaaaatcaacaaaatggtAG
CCTTAGCTCCAGTTGCTACAGTTAATAACATCCTTGGAGCTTTTAAATAT
TTCGCAAAAGCAAAAACTCCTTTGAAAGTAAGCAAATTGATCCTTTTCAT
GTAAGAATTTAATTTGCAAAACTGCATTTAAATCGAAGAGCCATCCAATC
TTTGTTTAAAAGAGGccctaaaatatattttatcgcGACCACAAGTAAAG
ATCAAAATCTGTTGCTTTGCAAAAATTTTTCGTTTTGATGcatttgaata
attttcatGAATAAGATAAcagtaaaatttttttcgtcgATGTCTTGGCG
GGCGAGGTGTGCGCCTTTAGGTCACACATAATAATTGAGTGCGTGTCTTT
ATCCCAATGCGAACCATAGCATATGTGGTTATTAAGACGAAATCTATTGG
GTAGGCGTTTAATCCCTGCTAAAGAGTTTGATGAATTATGAATTAAtcat
atctttttcttttcagtatCTGTTCAAATTAATGGGTGTCAAACAGTTTT
TGCCTACATCTTTCTTGACCAAGTATCTTGCTAAAATGATTTGTGCCAAA
GAATACCTGAACAATATTTGCGCtggtttcattttcattatggCAGGATT
TGATACTAGTAATATGAACACTACAAGATTACCTGCTTACATCGCACACA
CTCCAGCTGGAGCATCAGTCAAAGATATGTTTCATTTTGCTCAGgtaatt
ttcatcttcaaatatataattttcagtGAAATAGAAAAATCTAGTCTTTC
ATCTCCATTACAATGAACTACACTAAGCTCGCATCCCAATGAATAAGACT
GTAAGCGTTCACAAATTTCCTTAATCAAAAAGCATATCATTCCCGACCAC
ATCAGATACCCCCTAGATAGCATTCTAATTCAAGCCCCTTAGTTTTAGTG
AAAAACAATCATCATGTTCACTGCGGACATTGGGATTTTAATactacaaa
atacaaaataatttttttttaatttctttttcatgataTCTTTAGAATGT
TGGAAAACCTGGATTACGTAAATACGATTATGGTTATTTCAGTAACTATT
TCAAATATGGCCAGGTAAGAATGTTTTTAATTGGAGTGAAATTCactcat
ttttctttcattcataAAACTTGCTAAAGCTGAAAGATTAAAAGATGGGT
TTTTCTACGACGGTTCTCAAATCCAAAATATAGATAGATTTCTCCTCCAT
CCACTGACCTGACTAATACCAGCACACTATTAAACCCGTGCAATCGCACT
CTAAGCCAGTCGAAGTCTTGCAAACTCGAGTCTAGTCCTTTATTCCCTCG
CTTCAAAAAAtgatgcaagtggctctgggtacatGATTAAAGCCTAGGTA
GACAAAAACTTTTATCTCTCTCGCATTGAAAACATTGAACATTCAGTCTT
AAATtgtattaaagtctgtctcaaaataatttgcagctgaagACAAAAAT
GGcagtaacttttgatagaattcgaattaagtTGTGATTTtatgctcgtt
aaaaagatattcgtgagtggaatattatcaagtaaaaaaattggaaaaaa
aaatgaaaatgaaaatgaaaaatgaattattattttgagacagactttag
aatCTAAAATTCACGGAATGGGAAATCTCAAAGGATAAATTAAACAAAGA
TTTAAATCTTTCATTTTAGTTTTCAGCACCAGAATATGACTTTAAACCAT
TCAATGTTCGTTTGGCAATCTTCACTGGTGGTAATGATTGGCTTGCACAA
CCTCAAGATGTCAGTCAAAGTGTTCGTGGTCAAATCAAAACCATTGTTTA
TGATGAAGATTTCCCAGAAATGAACCATTTAGATTTTGTGTGGGGAGTTG
ACGCTGCTACATTGATTTATAACAAAATTGTTAAGATATTTGACTACTGA
Coding sequence (CDS) from alignment at sc0000120_pilon:572981..577080+ >XLOC_037258 ID=XLOC_037258|Name=XLOC_037258|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2430bp|location=Sequence derived from alignment at sc0000120_pilon:572981..577080+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATAAAAACTGGACTGTTTTGGTTGCTGACTGCAACATTTGCGACCGC
TTTTTATGATGAAAAGCAATTTGCTGATTTACGTAAACAGTATGGTTGGG
TGGATATCCCAGAAGTCAACATGAAGATCATGATAAAAACTGGACTGTTT
TGGTTGCTGACTGCAACATTTGCGACCGCTTTTTATGATGAAAAGCAATT
TGCTGATTTACGTAAACAGTATGGTTGGGTGGATATCCCAGAAGTCAACA
TGAAGATCGATGAAATGATTCGATATCATGGATATCCAGTTGAAATGCAT
AATGTTATAACTGAAGACCACTACGTACTGAGCGTTCAACGTATACCTTC
TAGTCCCAACTACAaaggaccaatcaaaagcgTTCCTGTTTTTCTTCAAC
ATGGTTTGTTAGATTCTGCTACCACATGGGTGATCAATGGACCTaaaaaa
aGTTTAGCATACGTTTTAGCTGATCAAGGGATGAAATGATTCGATATCAT
GGATATCCAGTTGAAATGCATAATGTTATAACTGAAGACCACTACGTACT
GAGCGTTCAACGTATACCTTCTAGTCCCAACTACAaaggaccaatcaaaa
gcgTTCCTGTTTTTCTTCAACATGGTTTGTTAGATTCTGCTACCACATGG
GTGATCAATGGACCTaaaaaaaGTTTAGCATACGTTTTAGCTGATCAAGG
TTATGATGTTTGGCTTGGTAACAGTCGTGGAAACTTCTATTCAATGACAA
ACACTAAGATACCAAATACTGACTCCAAGTTTTGGGATTTCACTTATGAT
GTTTGGCTTGGTAACAGTCGTGGAAACTTCTATTCAATGACAAACACTAA
GATACCAAATACTGACTCCAAGTTTTGGGATTTCACttttgaagagATGG
CAAAATATGATGTACCAGCTTGTATCAATTACATCCAAAAAATGTCAAAC
GCAAGTAAAATAAACTACGTCGGACACTCACAAGttttgaagagATGGCA
AAATATGATGTACCAGCTTGTATCAATTACATCCAAAAAATGTCAAACGC
AAGTAAAATAAACTACGTCGGACACTCACAAGGTACAACAATGGCATTCA
TTGAATTCAGCAGGAACCAAGATCTagcaaagaaaatcaacaaaatggtA
GCCTTAGCTCCAGTTGCTACAGTTAATAACATCCTTGGAGCTTTTAAATA
TTTCGCAAAAGCAAAAACTCCTTTGAAAGTACAACAATGGCATTCATTGA
ATTCAGCAGGAACCAAGATCTagcaaagaaaatcaacaaaatggtAGCCT
TAGCTCCAGTTGCTACAGTTAATAACATCCTTGGAGCTTTTAAATATTTC
GCAAAAGCAAAAACTCCTTTGAAAtatCTGTTCAAATTAATGGGTGTCAA
ACAGTTTTTGCCTACATCTTTCTTGACCAAGTATCTTGCTAAAATGATTT
GTGCCAAAGAATACCTGAACAATATTTGCGCtggtttcattttcattatg
gCAGGATTTGATACTAGTAATATGAACACTACAAGATTACCTGCTTACAT
CGCACACACTCCAGCTGGAGCATCAGTCAAAGATATGTTTCATTTTGCTC
AGtatCTGTTCAAATTAATGGGTGTCAAACAGTTTTTGCCTACATCTTTC
TTGACCAAGTATCTTGCTAAAATGATTTGTGCCAAAGAATACCTGAACAA
TATTTGCGCtggtttcattttcattatggCAGGATTTGATACTAGTAATA
TGAACACTACAAGATTACCTGCTTACATCGCACACACTCCAGCTGGAGCA
TCAGTCAAAGATATGTTTCATTTTGCTCAGAATGTTGGAAAACCTGGATT
ACGTAAATACGATTATGGTTATTTCAGTAACTATTTCAAATATGGCCAGA
ATGTTGGAAAACCTGGATTACGTAAATACGATTATGGTTATTTCAGTAAC
TATTTCAAATATGGCCAGTTTTCAGCACCAGAATATGACTTTAAACCATT
CAATGTTCGTTTGGCAATCTTCACTGGTGGTAATGATTGGCTTGCACAAC
CTCAAGATGTCAGTCAAAGTGTTCGTGGTCAAATCAAAACCATTGTTTAT
GATGAAGATTTCCCAGAAATGAACCATTTAGATTTTGTGTGGGGAGTTGA
CGCTGCTACATTGATTTATAACAAAATTGTTAAGATATTTGACTACTGAT
TTTCAGCACCAGAATATGACTTTAAACCATTCAATGTTCGTTTGGCAATC
TTCACTGGTGGTAATGATTGGCTTGCACAACCTCAAGATGTCAGTCAAAG
TGTTCGTGGTCAAATCAAAACCATTGTTTATGATGAAGATTTCCCAGAAA
TGAACCATTTAGATTTTGTGTGGGGAGTTGACGCTGCTACATTGATTTAT
AACAAAATTGTTAAGATATTTGACTACTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000120_pilon | genome | sc0000120_pilon:572981..577080 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 985-1215:3870 |
| Aaloc | 916-984:3196 |
| Aaloc | 688-915:2667 |
| Aaloc | 544-687:2134 |
| Aaloc | 445-540:1707 |
| Aaloc | 352-441:1030 |
| Aaloc | 130-348:494 |
| Aaloc | 1-129:1 |
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