XLOC_012089 (mRNA) -

Overview


Name	XLOC_012089
Unique Name	XLOC_012089
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000124_pilon:618251..622225+
coding sequence from alignment at sc0000124_pilon:618251..622225+

mRNA from alignment at sc0000124_pilon:618251..622225+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_012089 ID=XLOC_012089|Name=XLOC_012089|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3975bp|location=Sequence derived from alignment at sc0000124_pilon:618251..622225+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaagcagaaaaaTCCAGCTTATGCTGGAATGTCACGATCAGAGCTCAT
GGTCATGACTGTTACTGACATCATAAGCCAGTTGATAGCTGCTCACGAGA
GAAAAGAAGACATCAATCTAAATAAACTCAAGAATGCAGTGTCCAGGAAG
TATGGATTGTCTACTCAACCAAGACTTGTTGATATCATTGCAGCAGTTCC
AGCTAATTATCGTAAAGTCTTGGTTCCTAAATTGAAAGCAAAACCAGTCA
GAACTGCATCAGGTGTAAGTCAAAATCCTTTACTTTTAAAGCTATTTCCT
AAgtatgaaaataaatgctaaCTTTGGGGGCTTTCATTGATGTTTCGTAG
TAATAACAGTACCTATATTATATTCAAATTGATGTTTTCTTCACTTGACA
ATGTTACAAACGAAACAGTTGGTCGGAGAAAAGAAtgataaagttttgaa
ttttctaactacaaaaaatcattttaggaCTTCCTTTTATTACATTTTCT
TTATGTAGATTGCAGTGGTAGCAGTGATGTGTAAGCCACACAGGTGCCCC
CACATCAATATGACTGGAAACATTTGCGTCTACTGTCCTGGTGGTCCTGA
TTCTGATTTCGAATATTCAACACAGTCGTACACTGGCTATGAACCAACAT
CAATGCGTGCCATCCGGGCTAGATACAATCCCTTCTTACAGACGAGGCAC
CGTGTGGAGCAATTAAAATCTTTAGGACATAGTGTGGATAAAGTGGAATT
TATAGTCATGGGTGGAACGTTCATGGCTTTGGATGAAGAGTATCGTGATT
ATTTTATCCGGAATCTCCACGATGCACTGTCCGGACATACAAGTAGCAGT
GTTGAAGAAGCTGTCCGGTAAGTCTTTGATAAAGTTGCTGACTCGAACTA
aactaattttgtttttaaatcctAGGTTTGTTAATTTCGTATGCACTCAA
TGTAACAGCTTCATCGAATTCGCAAGGCTAGTTTAGTTTATCATCTCCAC
TTTTCACGTAGAAGCAGAAATTATAGTGGAAGCAAATAATTTTCATTCTA
TTTTCAGATATTCAGagaaaagcaaaacaaagtGCATAGGGATTACAATC
GAAACACGACCCGATTATTGCTTGAAACGTCACTTGAGTTCTATGCTTCA
ATATGGGTGTACAAGACTGGAAATCGGTGTTCAAAGTGTTTACGAAGATG
TTGCACGTGATACTAACAGGTGATAAAATCAATTAACCTTTGAAGAAACT
CTGTAAGCCTAATAATAATCGGCGGATAATCGGCGTGGGGGAGGTAGAAA
AATGAGGGAGATGGCCAGAGTATGCATTACAAAGCTCCGCCTGCTTCAAA
AtagctttcttaaaaaaaactaactgAACAGAAATTGAAATACTTAACCT
CGATAATACCCTTTGAAGAAACTTTGAAAGCCAGGGGGAGAGTTGGCGTA
GTGGGAGGTGGGAAAGTGGTGGCCAGAGTATGCATTACAAAGCTCCGCTG
CTTCAAAATAGCTTTCAAAAAAGAACTAACTGAATGGAAATTAAATATAA
AGCTACTACACATGATCTTGGTTTCTAGAAAGGAATGTTTAAAGCGTGTT
CAATGAATTGTCTATTATAAGACCTACACTGTGTTTTTAAGTGTCAGaaa
aaaaGCTCTATTTGTTTTCAGATACAGAGGATCGGTTAttcatttcgttg
accatttcaaaatcttaattGTCTTTCTCAGATCGTTCCCAccaaatatt
ttgttcaaaagcTGTATGGGGTAGTTGTGAAAATGTAAAATACtccatcg
aaattcaatttcaacttctttctttcttttttctctcaCCAGAGGTCACA
CAGTAAAAGCAGTTTGTGAATCATTTCATTTGGGCAAAGATTCTGGTTAC
AAAGTCATCGCACACATGATGCCTGACCTCCCAAATGTTGACTTAGAACG
GGACATTGAACAGTTTATCGAATTCTTTGAGAATCCGGCATTCCGAGCGG
ATGGTCTAAAAATCTATCCCACATTGGTCATTCGTGGTACTGGTTTGTAC
GAGTTGTGGAAAACTGGACGCTATAAAAGTTACTCACCGAACACGCTTAT
TGATCTTGTAGCACGTATATTAGCTCTGGTTCCACCGTGGACCAGGATTT
ACCGTGTACAGCGTGATATTCCAATGCCACTGGTCACTTCGGGTGTTGAA
CACGGCAATTTAAGGGAGTTGGCACTTGCTAGGATGAAAGATTTTGGAAC
TGAggtatttttatcatgttttatCATCTTTTCATTTAATTTACCAATTG
GGTCCTACTTTTCTTGGTTCGTTGGACTATTAAAGGGAAAACTGGATAAA
ATTGGTAATAAATAAtctaaatttgattttattgttcGAGAAAATTTTCT
TGTACAATCTGACTCAAATTAGTAAACGCGATCtctttcaacaatatttt
taaaattcccTCACAAAACCTGAATATTGTAGACTGTGGCAGAGTGCCGG
TTGTTCCAGGCTATCAGTTTTATTCTGCTCTTTAGTGCCGTGATGTGCGT
ACCCGTGAGGTTGGAATACAagaaattcacaaaaatattcGCCCTTATGA
AATCGAACTGATACGAAGAGATTATTTTGCAAATGGAGGTAGTTATATAT
TTCATTTGGTTTTGACTTTAAAACCAATtcctatttttgtttttgcattt
ttaaacTGAATGAACAATTACATTTATTGGTTTTTCTGAACATCAGCCAC
GATCAAGAAGGCGAGAATCCTCGTAATGGTACGAGCTTTCGCTTCGATTT
TACTTCCCTTCGCTCTTTATTTGAAAACTCGTTACATTGAGTTCTAGAAA
CAAGCATTTGTCTCTTTTGCCACTTTCAATGTTATTTCAAATTCTACAAT
CTCATACTTTTTCCTCTAATTGTGTGTAACTCCGTCAGACAAATTTCCAG
GCTTTTTCTGCTACCGGATAACGGTGGCAGAAACTCAATCTTtacttgaa
ttttgaaactcgaTCCTAATTTTGTACATGAGCCATGAGaatcaagacaa
aaatttgatgtccTAGGCCCTTATTAACAGAAAAAGCCCATTCTGAggtt
aattctttgtgttttaatagTTCCCAACTAATTAAACAGAGCCTGGGTTG
ATTATTTTGTTCTTCGAACTGAATTCAAACtcaatctttgaaataaaaac
ggtAGCAGCTCAAACACCTGGAAATTTGCCTGTACCGTAGCTCAAATGTA
AGCGCACCTTTTCACATAGGATGGGAGACGTTTTTGTCTTACGAAGATCC
TGCGCAAGACATTCTTGTCGGTTTACTGCGATTACGGAAATGTTCGAAAG
AAGTATTCCGACCGGAGTTGAAAGGTGAACAATGTTCCATCGTACGCGAG
TTGCACGTTTATGGGAGTGTCGTTCCTGTAAGATCACGTGATCCGACCAA
ATTCCAACATCAGGTGAATTGAGATTTAGCTTTGAGTGATTTCATAAAGT
TTAAAAGCgtcttttttcaactttgacCTTAAAGACTGGGGAGGAATTGG
AAGTTGTATTATTCGATaacctttttttatcaaatcgtCACTGctaatta
tttttcaaactctAGTATTATTTAATTTGTCGGTTTTAATTCTCTGGTTC
GTACTCTTTTTATCAAACTGGTAAAATCAGCGTGATGTTATTATAtacct
tgttcttataaataaaacgatTAAATCCACGCAGTCTAAACACTAATTTT
CTAACATCAGTATTCGATAGCATTGAGTAATTTATTCTCTGTAATTTTTA
GGGTTTTGGCACACTTCTAATGGAAGAAGCGGCCCGGATAGCCCGCGAGG
AACATTTTTCGACCAAGATAGCTGTCATTTCTGGCGTAGGCACTCGTGAC
TATTATCGTAAACTTGGCTATGAACTCGATGGACCTTACatgtcaaaaaa
attgactgACTTTGAAGATGATTAA

Coding sequence (CDS) from alignment at sc0000124_pilon:618251..622225+

>XLOC_012089 ID=XLOC_012089|Name=XLOC_012089|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3336bp|location=Sequence derived from alignment at sc0000124_pilon:618251..622225+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaagcagaaaaaTCCAGCTTATGCTGGAATGTCACGATCAGAGCTCAT
GGTCATGACTGTTACTGACATCATAAGCCAGTTGATAGCTGCTCACGAGA
GAAAAGAAGACATCAATCTAAATAAACTCAAGAATGCAGTGTCCAGGAAG
TATGGATTGTCTACTCAACCAAGACTTGTTGATATCATTGCAGCAGTTCC
AGCTAATTATCGTAAAGTCTTGGTTCCTAAATTGAAAGCAAAACCAGTCA
GAACTGCATCAGGTatgaagcagaaaaaTCCAGCTTATGCTGGAATGTCA
CGATCAGAGCTCATGGTCATGACTGTTACTGACATCATAAGCCAGTTGAT
AGCTGCTCACGAGAGAAAAGAAGACATCAATCTAAATAAACTCAAGAATG
CAGTGTCCAGGAAGTATGGATTGTCTACTCAACCAAGACTTGTTGATATC
ATTGCAGCAGTTCCAGCTAATTATCGTAAAGTCTTGGTTCCTAAATTGAA
AGCAAAACCAGTCAGAACTGCATCAGGTATTGCAGTGGTAGCAGTGATGT
GTAAGCCACACAGGTGCCCCCACATCAATATGACTGGAAACATTTGCGTC
TACTGTCCTGGTGGTCCTGATTCTGATTTCGAATATTCAACACAGTCGTA
CACTGGCTATGAACCAACATCAATGCGTGCCATCCGGGCTAGATACAATC
CCTTCTTACAGACGAGGCACCGTGTGGAGCAATTAAAATCTTTAGGACAT
AGTGTGGATAAAGTGGAATTTATAGTCATGGGTGGAACGTTCATGGCTTT
GGATGAAGAGTATCGTGATTATTTTATCCGGAATCTCCACGATGCACTGT
CCGGACATACAAGTAGCAGTGTTGAAGAAGCTGTCCGATTGCAGTGGTAG
CAGTGATGTGTAAGCCACACAGGTGCCCCCACATCAATATGACTGGAAAC
ATTTGCGTCTACTGTCCTGGTGGTCCTGATTCTGATTTCGAATATTCAAC
ACAGTCGTACACTGGCTATGAACCAACATCAATGCGTGCCATCCGGGCTA
GATACAATCCCTTCTTACAGACGAGGCACCGTGTGGAGCAATTAAAATCT
TTAGGACATAGTGTGGATAAAGTGGAATTTATAGTCATGGGTGGAACGTT
CATGGCTTTGGATGAAGAGTATCGTGATTATTTTATCCGGAATCTCCACG
ATGCACTGTCCGGACATACAAGTAGCAGTGTTGAAGAAGCTGTCCGATAT
TCAGagaaaagcaaaacaaagtGCATAGGGATTACAATCGAAACACGACC
CGATTATTGCTTGAAACGTCACTTGAGTTCTATGCTTCAATATGGGTGTA
CAAGACTGGAAATCGGTGTTCAAAGTGTTTACGAAGATGTTGCACGTGAT
ACTAACAGATATTCAGagaaaagcaaaacaaagtGCATAGGGATTACAAT
CGAAACACGACCCGATTATTGCTTGAAACGTCACTTGAGTTCTATGCTTC
AATATGGGTGTACAAGACTGGAAATCGGTGTTCAAAGTGTTTACGAAGAT
GTTGCACGTGATACTAACAGAGGTCACACAGTAAAAGCAGTTTGTGAATC
ATTTCATTTGGGCAAAGATTCTGGTTACAAAGTCATCGCACACATGATGC
CTGACCTCCCAAATGTTGACTTAGAACGGGACATTGAACAGTTTATCGAA
TTCTTTGAGAATCCGGCATTCCGAGCGGATGGTCTAAAAATCTATCCCAC
ATTGGTCATTCGTGGTACTGGTTTGTACGAGTTGTGGAAAACTGGACGCT
ATAAAAGTTACTCACCGAACACGCTTATTGATCTTGTAGCACGTATATTA
GCTCTGGTTCCACCGTGGACCAGGATTTACCGTGTACAGCGTGATATTCC
AATGCCACTGGTCACTTCGGGTGTTGAACACGGCAATTTAAGGGAGTTGG
CACTTGCTAGGATGAAAGATTTTGGAACTGAgAGGTCACACAGTAAAAGC
AGTTTGTGAATCATTTCATTTGGGCAAAGATTCTGGTTACAAAGTCATCG
CACACATGATGCCTGACCTCCCAAATGTTGACTTAGAACGGGACATTGAA
CAGTTTATCGAATTCTTTGAGAATCCGGCATTCCGAGCGGATGGTCTAAA
AATCTATCCCACATTGGTCATTCGTGGTACTGGTTTGTACGAGTTGTGGA
AAACTGGACGCTATAAAAGTTACTCACCGAACACGCTTATTGATCTTGTA
GCACGTATATTAGCTCTGGTTCCACCGTGGACCAGGATTTACCGTGTACA
GCGTGATATTCCAATGCCACTGGTCACTTCGGGTGTTGAACACGGCAATT
TAAGGGAGTTGGCACTTGCTAGGATGAAAGATTTTGGAACTGAgTGCCGT
GATGTGCGTACCCGTGAGGTTGGAATACAagaaattcacaaaaatattcG
CCCTTATGAAATCGAACTGATACGAAGAGATTATTTTGCAAATGGAGTGC
CGTGATGTGCGTACCCGTGAGGTTGGAATACAagaaattcacaaaaatat
tcGCCCTTATGAAATCGAACTGATACGAAGAGATTATTTTGCAAATGGAG
GATGGGAGACGTTTTTGTCTTACGAAGATCCTGCGCAAGACATTCTTGTC
GGTTTACTGCGATTACGGAAATGTTCGAAAGAAGTATTCCGACCGGAGTT
GAAAGGTGAACAATGTTCCATCGTACGCGAGTTGCACGTTTATGGGAGTG
TCGTTCCTGTAAGATCACGTGATCCGACCAAATTCCAACATCAGGATGGG
AGACGTTTTTGTCTTACGAAGATCCTGCGCAAGACATTCTTGTCGGTTTA
CTGCGATTACGGAAATGTTCGAAAGAAGTATTCCGACCGGAGTTGAAAGG
TGAACAATGTTCCATCGTACGCGAGTTGCACGTTTATGGGAGTGTCGTTC
CTGTAAGATCACGTGATCCGACCAAATTCCAACATCAGGGTTTTGGCACA
CTTCTAATGGAAGAAGCGGCCCGGATAGCCCGCGAGGAACATTTTTCGAC
CAAGATAGCTGTCATTTCTGGCGTAGGCACTCGTGACTATTATCGTAAAC
TTGGCTATGAACTCGATGGACCTTACatgtcaaaaaaattgactgACTTT
GAAGATGATTAAGGTTTTGGCACACTTCTAATGGAAGAAGCGGCCCGGAT
AGCCCGCGAGGAACATTTTTCGACCAAGATAGCTGTCATTTCTGGCGTAG
GCACTCGTGACTATTATCGTAAACTTGGCTATGAACTCGATGGACCTTAC
atgtcaaaaaaattgactgACTTTGAAGATGATTAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_012089	XLOC_012089-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000124_pilon	genome	sc0000124_pilon:618251..622225 +

Properties


Property Name	Value
Aaloc	1495-1668:3802
Aaloc	1303-1494:3272
Aaloc	1198-1299:2536
Aaloc	787-1197:1844
Aaloc	625-783:1059
Aaloc	265-621:509
Aaloc	1-264:1

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XLOC_012089 (mRNA) -