XLOC_037897 (mRNA) -

Overview
NameXLOC_037897
Unique NameXLOC_037897
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000165_pilon:636306..642109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037897 ID=XLOC_037897|Name=XLOC_037897|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5804bp|location=Sequence derived from alignment at sc0000165_pilon:636306..642109+ (Clytia hemisphaerica_ch_hm2_pilon)
AtgcctaaaaagaaaaaagatacaCAGGATATACCTAATGATATGGCCAG TGCAAGACAAAGCCTTGTGAATGGCCAGGGTACATCATCTTCTTATGGCA GCACTCAAAGAAATTCACAGatgacttttcaaattcatgatGGTAGAAAT GGTACCGTTCAAGATTTGGTTGTTGTCCAAAAGCTGGGGAAAGGTAGTTT TGGAGATGTTTATAAAGTTGAAGATGAAAGAGGGAAAGCGTTTGCTTTAA AGAGAATTTCGTGTAGAATGCCAAGCTATAGTAATGAACAAGCTAAATTG ATTCAAGATCTTAtcggaaatgaaattttttctatGATAAATTTAAGACA CCCAAACATTGTGCAATTATATTCTTACGATTTTGAAGGAATAGCAGCGC TCCTTGTAATTGAGTTTTGTCCTGGCGGAAACTTGAATACCCGATTACGT GACCCTGTCAATATGAAACAAAAGTTTGACTGGATGTCACAATTATTGGA AGCAATGGCTTACCTCCATTACAATAATTTTGTTCATCGAGACCTCAAAC CTGAAAACGTACTGCTTGGAGATAAAGGGCAGATGAAGCTGGCAGATTTT GGTATCTCCAGAGCCTTTTTAACGcgagatttaaaaaataacgaagataG CCTTTCAGAGTACGAAGAAAAATTTATGGATAAATATGCAGGTACCATGT ATTGGATCGCTCCTGAAGTCTTTGATCGAAAATATACAGAAAAGGCTGAC ATTTTCTCGCTTGGGGTGATATTCTATGCTATTTTGAcaaggaaatattt aacttaTCAAGGTGAGTCTTATTATGGTGCATTTGTGAATCATCGTGGGA AAGAAGTTGGCCTTGGTCTTGCTATGCATCGTTCTGAGAAAACACGCCTG CCTTCCTTTGACGGATTGAAAAGTGAGGCGGAGAAGTTGGTTGTTGGCAT GGTGACTGAAATGTTATGTTTTCGTGAAGAAGAAAGAATAAGTCTTAACC GAGCGCAGAAAGTTCTTGAAGATGCAAAGCACTATTTACAAGAAGATGCC ATATCCATGAAATCTTCTCATTCAAGAACCTCTTCGTTGTATACTGAAGC TCCTTTCCAAGATGGGCAGGCTGACAAAAAATCCTGCTGTTGTACCTTTC TTGGTGAGATTTGTTATAAAGACAAGTTGAACagcaaacattttttgaaa tctggtCGATTTTCAGACCTTTTTGCagagttttttttacttctaaATCT CTTCATCGAAAACTTCGATTCTTTACCTTTACAATTTCTATGTGTGAAAT ACCTACCTACTTACCCTACTTCCTTCCTATTTATaaagaatttgattttc tttttcaggaacGAAAAACGAGGATGAAAGGAATGAGGAGAAGAAATATT TGGTTCAGTGAGAATTTTGTgttatctttattttcttatttataaaaaat gaaatttcttttaaattacaCAATTCTTTCGAGTCACACACATTATACGC CTCGAGCCCTGAAATCAGCAAATTTCTTTACTATCTCCTGAAGTAAAAAC TATATTTAGATCAACTAACCATGACAAACGGTATAATTATGGTATAATAT AATGGATGGTCAAAgctaatttctttgaaattgagATAGAATTCTAAGCA ACCTTAGCCTTGAGCCGAAAATTGGGGTTGcttattaaaaatatataagt aCTATGTAAGTTAAGGGCTCCATTTTTATTTGTTGTGGACCATATCAGAT TAAACAATTTGAAGGGCTTTCATAGAAGCCAAAATGGAAGGCTGATAAAT GTGTTTCTTTAGTTTTACTTCTTTCGTTTGTTTGTATTCAGCTTCTCTTC GTGAATTCCAGTAAGAAAGCCCTCCTAACTTTATCATTGATGCTCTGAAC CAACCGCTTGAAAATTGCTTAGTTGTTTTTCGTCATCTTTActttttaaa tgataaattgttgaatttgatgGAGCCAATTTTTTGTGGAATCTTTCGTC TGTACTTTTACACCTTAGTCCACCATCTTGCTACATAGataatttaaaat attgaaaaacttttattgtAAGGAAATCAGAGGAAATCATTATTGTAGAA AGATTTCATAATATAATTTATAGATAACAGACCTTAGTACGGAAGCCCAT TAGTGCCATTTAGattttcctttaattttttaacgacgaaactaaaaaaa ttgacgacgaaactaaaaaaattgatgacgaaactgagaaattgacgaaa ctgacAATAAATTGTTATTTCGTTTCGTCGTTGAAAATTTTGACAACAAA ACTACTACAAAGTCAAAATTGACAAcgaaactaaaaataaattgTTACTT TGTTTCGTCGTTGaaaaaaaTCGAcaacgaaactaaaaaaaattgaaaat ggtggccctaATGGTTTCAAAATGCAAATATCATTGATTCTGGTGGATTC TGAAGATGGATTTGATAGTTCTGgttaaggacatgtttttttttgactgt accaaaatgccgattttcaaccaacccggttcaaatcggcactaacagag acagctgaaccctttcttatcgttattcaaaaataagaaaatagattagT AGCTCTGTCTGATACTTTTTGTCCGACTttaatagcttttatggaactta agatttcgcttgttgaatccggagtatttcaggatgaaaaaaatcatagc ctatttcggatttataaagtcggctctatatttggcctttgtcgtgttca atttatatacgaaacttatatcagggtgtagctaaaggattgaattttca catcgacctcttttttttggaaaaaaccggaggaaaatgggatcaaattg atcatttttgaaatctaggtgctaattctaatcgtatatattttcctgac aagtctatctatcggggaagtgatttgagatttttgtttggttgataaga aaggaatgaactaaagaaaacgggaattgttaaaatgagtgaaaaatgat taaaaaagtcctttgtttgttttgatcataactcactccggcctttaaaa aaattactcctcaggctattttatgattttaggctacctcaggaatgcat agaaacctcctcaggaccgaataatgagtcatggagtgagatatgatcca aaacactctatgattaattaatcctgaaatactccgaattttgagatttc aaatagctcattttaaagcccttcccaaatatcaatacatatcaaaattt tgggaaaattcatcatgcgaatgacgaaataattaaaataaagtgatttt cacgattttcgaaaacctgattttggtacagtcaaaaaaaacatgtcctt aatGCAATCCTGGTGAAGAAGCCCGTGAATAAGATGCTGGCAATGATGAA TCAGAAGATTTTTGGAATCACCGGTGTCAATGGAATCATTTGAactaatc aatgatgaaatgaatagtgcaaatgatgaaatcaatggttGATTCTTTCA CCCGCACAATGGATTCCATCATCTCATCATGCTACAGCTTTTATTCCATA ATCTGctccattgattccatcatttgcaccattgattccatcatttgcac tattgattccatcatttgcaccattgattccatcatttgcaccattgatt ccatcatttgcacctttgattccatcatttgcacCATCAAAGCTGTAGCA TGATGAGATGATGGAATCCATTGTGTGGGTGATAGAACCaaccattgatt tcatcatttgcactattgatttcatcattaattAGTTCCAATGATTCCAA TGACACCGGTGGTTCCAAAAATCTCCACCATCACATCCTTATTCTGGTTC ATCATCGCCAGCATCTCATTCACAAGAAGCAATTTGTTCGACGaagtaac aattttttttcattttcgtcgtcaatttttcattttcgtcgtcaattttt tagtttcgtcgtcattttttttcagtttcgtcgtcatcttttttagtttc gtcgttaaaaaattaaaggatAATCTAAATGGCACTAATGGGCTTCCGTA CCTTAGTACgcaatttttttacaattgatatatttttcataacgcttttt ataattgtaatttttatagattaaattatTACCAGATAGCTGaccattat ttttttcagtctTATGCTTACTTTATACGAGATAACTGAATATTGAAATC AATTTAAATGACTTGGCCTAGTCTGGAGATTCATGCTCTCTAACCAAAAC TTACACCATCCAAATAAATATCCCATGAGAAGCTACTCAGTGAGAGTATT ATGGTATTTATATGTTCCATTTCGAATTTGTTAGCCACTCAAAATTGCGc atttccaatcaaaacaattatatcacgtgatttcaacaattgtttaatag ccaatagaattctgcgcTAGGATCCTGTATTTTCATAAATACTCGGCCTA GTACTGGCTTTTCTCTGTTTTTCTGTTTAGTCCGGTACATACACACgtcg aaatttttttatataaacgaTGAAGGCCCAGACTCTCAGCTAAACTTTGC tgtactttttttcttattctgtTCCCCATATTTTGTCAATACAAATTCGT ATTCTTGATCgtttttctaataaagtttCTCTTATCACTTTCAGATTGAA TaagtaataaaaaaacaaatatgaaTTTATGGATGTATTATGAATGAGTT AAATGGACCTCATAATCAAATTGGAACAATTAAAAAATGTCTTTCCAAAT CTTGGACTGCAAAAGTGGATGTTTTCAGGAATTGACCATCGTCAGTAAAC TCGACAAGGGTGCATTTGGAGATGTTTACAAAGTGGAGGATGCAAGAAAA CATGTTTTCGCTTTAAGGAAAATGACCCCTGAACATTATTTAAATACAAA AAACAATAGCGCCTCGAATGATAAACTTTATCAGGATGTTGTTGGTAATT TGCTATATACCATGTCCTGCTTAAAACACCCTCATATTGTTCAATTGTAT GCTTTCGATTTTGAAAGTACATCTACATTACTAGTTATGGAGTTTTGTCC TGGAGGAAACTTGAATAACCGATTACGTGACCCTGTCAATATGAAACAAA AGTTTGACTGGATGTCACAATTACTGGAAGCAATGACTTACCTCCATAAC AATAATTTTGTTCACAGAAACTTCAAACCTGAAAATGTGCTGCTTGGTAA TAGAGGGCAGGCAAAAATGGCTGATTTTGGACTTGCTCGACCGTTTTTAA CGCgagatttgaaaaataacgaagatTACCTTTCAGAATACGAAGACATG TTTATGGACAAATATGCAGGTACCATGTATTGGATTGCTCCTGAAGTCTT TGATCGAAAATATACAGAAAAGGCTGACATTTTCTCGCTTGGGGTGATAT TCTATGCTATTTTGAcaaggaaatatttaacttaTCAAGGTGAATCTTAT TATTATGGTGCATTTGTGGAGCATCATGGGAAAGAAGTTGGCCTTGGACT TGCTATGCATCGTTCTGAGAAAAACATTGAACCAAGTTTCGAGGGATTGA AAGAGACAATAGAACAAGATATTGCAAACAATGTAATCAAAAGTCTGCTT TGTTATGATTACAATAAAAGAATGAGTCTAGACCAAGCACACTCTTTCAT TTTTGACGCACtcgctaaaattgaaaaacaatgcGAGAAATCAGTACTTG AAGCAACAACGAATCCACCTGCAAGAAGGAAACCTTCGGTAGCCGGCTAT TTCTTTAGTAAGTATTTTGTGGGCGAGGTTTTCTTAGGATACACGACATT TTGA

Coding sequence (CDS) from alignment at sc0000165_pilon:636306..642109+

>XLOC_037897 ID=XLOC_037897|Name=XLOC_037897|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2352bp|location=Sequence derived from alignment at sc0000165_pilon:636306..642109+ (Clytia hemisphaerica_ch_hm2_pilon)
AtgcctaaaaagaaaaaagatacaCAGGATATACCTAATGATATGGCCAG
TGCAAGACAAAGCCTTGTGAATGGCCAGGGTACATCATCTTCTTATGGCA
GCACTCAAAGAAATTCACAGatgacttttcaaattcatgatGGTAGAAAT
GGTACCGTTCAAGATTTGGTTGTTGTCCAAAAGCTGGGGAAAGGTAGTTT
TGGAGATGTTTATAAAGTTGAAGATGAAAGAGGGAAAGCGTTTGCTTTAA
AGAGAATTTCGTGTAGAATGCCAAGCTATAGTAATGAACAAGCTAAATTG
ATTCAAGATCTTAtcggaaatgaaattttttctatGATAAATTTAAGACA
CCCAAACATTGTGCAATTATATTCTTACGATTTTGAAGGAATAGCAGCGC
TCCTTGTAATTGAGTTTTGTCCTGGCGGAAACTTGAATACCCGATTACGT
GACCCTGTCAATATGAAACAAAAGTTTGACTGGATGTCACAATTATTGGA
AGCAATGGCTTACCTCCATTACAATAATTTTGTTCATCGAGACCTCAAAC
CTGAAAACGTACTGCTTGGAGATAAAGGGCAGATGAAGCTGGCAGATTTT
GGTATCTCCAGAGCCTTTTTAACGcgagatttaaaaaataacgaagataG
CCTTTCAGAGTACGAAGAAAAATTTATGGATAAATATGCAGGTACCATGT
ATTGGATCGCTCCTGAAGTCTTTGATCGAAAATATACAGAAAAGGCTGAC
ATTTTCTCGCTTGGGAtgcctaaaaagaaaaaagatacaCAGGATATACC
TAATGATATGGCCAGTGCAAGACAAAGCCTTGTGAATGGCCAGGGTACAT
CATCTTCTTATGGCAGCACTCAAAGAAATTCACAGatgacttttcaaatt
catgatGGTAGAAATGGTACCGTTCAAGATTTGGTTGTTGTCCAAAAGCT
GGGGAAAGGTAGTTTTGGAGATGTTTATAAAGTTGAAGATGAAAGAGGGA
AAGCGTTTGCTTTAAAGAGAATTTCGTGTAGAATGCCAAGCTATAGTAAT
GAACAAGCTAAATTGATTCAAGATCTTAtcggaaatgaaattttttctat
GATAAATTTAAGACACCCAAACATTGTGCAATTATATTCTTACGATTTTG
AAGGAATAGCAGCGCTCCTTGTAATTGAGTTTTGTCCTGGCGGAAACTTG
AATACCCGATTACGTGACCCTGTCAATATGAAACAAAAGTTTGACTGGAT
GTCACAATTATTGGAAGCAATGGCTTACCTCCATTACAATAATTTTGTTC
ATCGAGACCTCAAACCTGAAAACGTACTGCTTGGAGATAAAGGGCAGATG
AAGCTGGCAGATTTTGGTATCTCCAGAGCCTTTTTAACGcgagatttaaa
aaataacgaagataGCCTTTCAGAGTACGAAGAAAAATTTATGGATAAAT
ATGCAGGTACCATGTATTGGATCGCTCCTGAAGTCTTTGATCGAAAATAT
ACAGAAAAGGCTGACATTTTCTCGCTTGGGGTGATATTCTATGCTATTTT
GAcaaggaaatatttaacttaTCAAGGTGAATCTTATTATTATGGTGCAT
TTGTGGAGCATCATGGGAAAGAAGTTGGCCTTGGACTTGCTATGCATCGT
TCTGAGAAAAACATTGAACCAAGTTTCGAGGGATTGAAAGAGACAATAGA
ACAAGATATTGCAAACAATGTAATCAAAAGTCTGCTTTGTTATGATTACA
ATAAAAGAATGAGTCTAGACCAAGCACACTCTTTCATTTTTGACGCACtc
gctaaaattgaaaaacaatgcGAGAAATCAGTACTTGAAGCAACAACGAA
TCCACCTGCAAGAAGGAAACCTTCGGTAGCCGGCTATTTCTTTAGTAAGT
ATTTTGTGGGCGAGGTTTTCTTAGGATACACGACATTTTGAGTGATATTC
TATGCTATTTTGAcaaggaaatatttaacttaTCAAGGTGAATCTTATTA
TTATGGTGCATTTGTGGAGCATCATGGGAAAGAAGTTGGCCTTGGACTTG
CTATGCATCGTTCTGAGAAAAACATTGAACCAAGTTTCGAGGGATTGAAA
GAGACAATAGAACAAGATATTGCAAACAATGTAATCAAAAGTCTGCTTTG
TTATGATTACAATAAAAGAATGAGTCTAGACCAAGCACACTCTTTCATTT
TTGACGCACtcgctaaaattgaaaaacaatgcGAGAAATCAGTACTTGAA
GCAACAACGAATCCACCTGCAAGAAGGAAACCTTCGGTAGCCGGCTATTT
CTTTAGTAAGTATTTTGTGGGCGAGGTTTTCTTAGGATACACGACATTTT
GA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_037897XLOC_037897-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000165_pilongenomesc0000165_pilon:636306..642109 +
Properties
Property NameValue
Aaloc766-1176:5394
Aaloc1-765:1