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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000115_pilon:277635..281996+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038640 ID=XLOC_038640|Name=XLOC_038640|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4362bp|location=Sequence derived from alignment at sc0000115_pilon:277635..281996+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGCCGCTTCTACATCATCTGAAAAACTCAATTCTTGTGTAAAAAC
AGATGTATTTTTATCCCACGATTGGGGTGAAGATGGTATAACTAATCACA
AAAAGGTCGAGAAAATCAACGAGGCGATCAAAGGATTGGGATATGTGACT
TGGTTCGACAATGAACGAATGGTTGGTAACGTACGAGAACAGATGGCAAA
CGGAATCCTAAACACCAAATGTTTTATTGCTTTCATTACAAAGCATTATC
ATAACAAAGTGGTCTTCGGTCTTGATAAAGATAATTGTCGagctgaattt
aattttgccAGCATGAAAGTCCCAATGGTTGCTGTACTTCTTGATCCATC
GATGAAAAACCCTCATGATTGGAAAGGGAATCTAGGATTCACACTCGCAA
CACAATTATATATTGATTTGTCTGGTGATATCAATGATGAAAAGTATTTG
ACGAATCAACTCAAACTTCTGAAAAAAGATTTGACGTCCAAAGGAATCTT
CCCAAATAAATTAGAAGAGACAGCGAATGAATTGAAAGGTAATTTTTGTC
TCGTTTTGTAGAAATCGTATCGATATAAAGGCCAGCTTTAAGAAAACTAA
CCACCCAAGAAATTATTGactaaattttcttaatttcaacTATAAACATA
CGagtaaaagtgtgataactggtttaaCGATTTAACGGATTATCTTTTTG
TACGGCCCATTTAAAATGTTGATTTCATTATATTCACTTTAATTACAAAA
TCATTTCCCTCCCTTTTCTACGGAAGCCCATTAGTGCCATTTAGATTTTC
CTTTAGTTTTTTAAcgacgaaactaaaaaaattgacgacaaaactaaaaa
attgacaacaaaaataaaaaattgacgacgaaaatgaaaaattgacgacg
aaactgaaaataaattgttactTTGTTTCGTTGTCgaaaaaattgacaac
gaaactaaaaaaattgacgacaaaactaaaaaattgacgacgaaactgaa
aataaattgttacttcgtttcgtcgtcgaaaaaaaTCGACAACGAAACta
gaaaatatttgagaatGGTGGCCCTGGTGGTTGAAAATTAATTCTGGTGG
ATTATGAAGTGGGATTTGATAGTTCCGGTGAATGCAATGCTGGTGAAGAT
GGTTCTTGTGAATGAGATGCTGGTAATGATGAACTAGAATAAGGATGTGA
TGGTGGCCCGGGGATGCTGGCCCGGGGATGGTGGAGATTGTTGGAATCAA
CGGTGTCAATGGAATCATTGGAATTAATCAATagcaaatgatggaatcaa
tggagcagatgatggaatcaataatggagcagatgatggaatcaatggtg
caaatgATGAAATAAATAGAACAGATGATGGAATCCATTGTGCGGGTGAT
GGAACCAACTATTGATTCTATCATTTGCACCattcatttcatcattgatt
agtTCCAATGATTTCATTGACACCCCAGTGACTCCAACATCTCCACTATC
ACATCCTTATTCTGGTTCATCATTGCCAGCATCTTATTCACAAGAACCAT
CTTCACCagcattgcattcaccagaactatCAAATCCATTTTCAGAATCC
ACCAGAATCAATaatatttccatttttcaaccatcagggccaccattttc
aattttttttagttttatagttcgattttttcgacgacgaaaagaagtaa
caatttattttcagtttcgtcgtcaatttttcagtttcgtcgtcaatttc
tttagtttcgtcgttAAAAAACTAAAGGAGAATCTAAATGGCACTAATGG
GCTTCCgtacttttttgtttatttattcgGTTATTCAATTCGCATTTTAC
GTTTTTGTGATAAGAACATTCATTCATGTTCACGTTATCGATATCTGAAA
TTACCCGAAAATGCGAAATCTTTCGGTATCCGAattttcttgtcgaatat
ctcAAAAATTATTATACTCAAGTCAACGCCCCAGTAATAAATATTACGCT
TACAGTTTTAGATATTCGATGGGAAGGCGATCCTTTGGTGAAGAACGCTG
TTGAAAATCAAGAAACAATACAGGATGAAAGCATTGAGAAATTGAAGGGG
AAAGTAAATAATCTACGGAGAAATGGGGAGTGGGCCGAAGCTATTCCTCT
TTATGAAGATATTATTAAGAAACAATCTTCCACTTTCGGTGAGAACCACA
AGGATACTCTGGATACCAGATACTGGTTGGCTCTTTGTCATTGCCAGCAA
AATGATTACCAAAAAGCCATACCAATTTTCCAGGATGTAGCCGACAAACA
ATCTTCCACTTCAGGTGAAAACGACAAGAATACTCTGAATACCAGATACT
GCTTGGCTCTATGTTATTACGAACAAAATGATTACCAAAAAGCCATACCA
ATCTTCCAGGATGTAGCTGACAAACGAACTTCCACTTTGGGTGAGAACCA
CGAGGATACTCTGAATACCAGATACTGCTTGGCTCTTTGTTATTACGAAC
AAAATGATTACCAAAAAGCCATACCAATTTTCCAGGATGTAGCTGACAAA
CGAACTTCCACTTTAGGTGAAAATGAAGCAGATACTCTGGATACCAGATA
CTGGTTGGCTCTTCGTCATTACCAGCAAAATGATTACAAAAAAGCCATAC
CAATTTTCCAGGATGTAGCCGAGAAACAATCTTCCACTTTAGGTGAGAAC
CACGAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTGTTATCACCA
ACAAAATGATTACCAAAAAGCCATACCAATCTTCCAGGATGTAGCTGACA
AACGAACTTCCACTTTAGGTGAAAATGAAGCAGATACTCTGGATACCAGA
TACTGGTTGGCTCTTTGTCATTACCAGCAAAATGATTACAAAAAAGCCAT
ACCAATTTTCCAGGATGTAGCCGAGAAACAATCTTCCACTTTAGGTGAGA
ACCACGAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTGTTATCAC
CAACAAAATGATTACCAAAAAGCCATACCAATCTTCCAGGATGTAGCTGA
CAAACGAACTTCCACTTTGGGTGAGAACCACGAGGATACTCTGAATACCA
GATACTGCTTGGCTCTTTCTTATTTCAAACAAAATGATTACCAAAAAGCC
ATACCAATCTTCCAGGATGTAGCCGATAAACGAACTTCCACCATAGGGGA
GAACCACGAGGATACTCTGAATACCAGATACTGGTTGGCTCGTTGTTATT
ACCAACAAAATGATTACCAAAAATCCATACCAATTTTCCAGCATGTAGCC
GACAAACAGTCTTCCACTTTAGGGGAGAACCACAAGGATACTCTGAATAC
CAGATACTGGTTGGCTTTTTGTCATTACCAGCAAAATGATTACAAAAAAG
CCATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCACTTTAGGG
AAGAACCACAAGGATACTCTGAATACCAGACACATGTTGGCTTTTTGTTA
TCACCAACAAAATGATTACCAAAAATCCATACCAATTTTCCAGCATGTAG
CCAACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGGATACTCTGAAT
ACCAGATACTGGTTGGCTTTTTGTTATTACGAACAAAATGATTACCAAAA
AGCCATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCACTTTAG
GGAAGAACCACAAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTGT
TATCACCAACAAAATGATTACCAAAAAGCCATACCAATTTTCCAGCATGT
AGCCGACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGGATACTCTGA
ATACCAGACACATGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAA
AAAGCCATACCAATTTTCCAGGATGTAGCCGACAAACAAACCTCCACTAT
AGGGGAGAACCACGAGGATACTCTGAATACCAGATACTGGTCGGCTCGTT
GTTATTTCAAACAAAATGATTACCAAAAAGCCATACCAATTTTCCAGGAT
GTAGCTGAGAAACAAACTTCAACTTTGGGTGAGAACGACGCAGATACTCT
GAATACCAGACACATGTTGGCTCGTTgttgttacaaacaaaattaTTACC
AAAAAGCCATACCAATTTTCCAGGATGTAGCTGAGAAACAATCTTCCACT
TTGGGTGAGAACGATAAGAATACTCTGAATACCAGATACTGGTTAGCTGG
TTGTTATTTCAAACAAAATGATTACCAAAAAGCCATACTTATACTAGAAG
ACGTCTTTAGAAGACAAACCTCAACGTTAGGAGGAAACCACAACCAAACT
GTTCGAAGCAAG Coding sequence (CDS) from alignment at sc0000115_pilon:277635..281996+ >XLOC_038640 ID=XLOC_038640|Name=XLOC_038640|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5790bp|location=Sequence derived from alignment at sc0000115_pilon:277635..281996+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGCCGCTTCTACATCATCTGAAAAACTCAATTCTTGTGTAAAAAC
AGATGTATTTTTATCCCACGATTGGGGTGAAGATGGTATAACTAATCACA
AAAAGGTCGAGAAAATCAACGAGGCGATCAAAGGATTGGGATATGTGACT
TGGTTCGACAATGAACGAATGGTTGGTAACGTACGAGAACAGATGGCAAA
CGGAATCCTAAACACCAAATGTTTTATTGCTTTCATTACAAAGCATTATC
ATAACAAAGTGGTCTTCGGTCTTGATAAAGATAATTGTCGagctgaattt
aattttgccAGCATGAAAGTCCCAATGGTTGCTGTACTTCTTGATCCATC
GATGAAAAACCCTCATGATTGGAAAGGGAATCTAGGATTCACACTCGCAA
CACAATTATATATTGATTTGTCTGGTGATATCAATGATGAAAAGTATTTG
ACGAATCAACTCAAACTTCTGAAAAAAGATTTGACGTCCAAAGGAATCTT
CCCAAATAAATTAGAAGAGACAGCGAATGAATTGAAAGATGGCTGCCGCT
TCTACATCATCTGAAAAACTCAATTCTTGTGTAAAAACAGATGTATTTTT
ATCCCACGATTGGGGTGAAGATGGTATAACTAATCACAAAAAGGTCGAGA
AAATCAACGAGGCGATCAAAGGATTGGGATATGTGACTTGGTTCGACAAT
GAACGAATGGTTGGTAACGTACGAGAACAGATGGCAAACGGAATCCTAAA
CACCAAATGTTTTATTGCTTTCATTACAAAGCATTATCATAACAAAGTGG
TCTTCGGTCTTGATAAAGATAATTGTCGagctgaatttaattttgccAGC
ATGAAAGTCCCAATGGTTGCTGTACTTCTTGATCCATCGATGAAAAACCC
TCATGATTGGAAAGGGAATCTAGGATTCACACTCGCAACACAATTATATA
TTGATTTGTCTGGTGATATCAATGATGAAAAGTATTTGACGAATCAACTC
AAACTTCTGAAAAAAGATTTGACGTCCAAAGGAATCTTCCCAAATAAATT
AGAAGAGACAGCGAATGAATTGAAAGTTTTAGATATTCGATGGGAAGGCG
ATCCTTTGGTGAAGAACGCTGTTGAAAATCAAGAAACAATACAGGATGAA
AGCATTGAGAAATTGAAGGGGAAAGTAAATAATCTACGGAGAAATGGGGA
GTGGGCCGAAGCTATTCCTCTTTATGAAGATATTATTAAGAAACAATCTT
CCACTTTCGGTGAGAACCACAAGGATACTCTGGATACCAGATACTGGTTG
GCTCTTTGTCATTGCCAGCAAAATGATTACCAAAAAGCCATACCAATTTT
CCAGGATGTAGCCGACAAACAATCTTCCACTTCAGGTGAAAACGACAAGA
ATACTCTGAATACCAGATACTGCTTGGCTCTATGTTATTACGAACAAAAT
GATTACCAAAAAGCCATACCAATCTTCCAGGATGTAGCTGACAAACGAAC
TTCCACTTTGGGTGAGAACCACGAGGATACTCTGAATACCAGATACTGCT
TGGCTCTTTGTTATTACGAACAAAATGATTACCAAAAAGCCATACCAATT
TTCCAGGATGTAGCTGACAAACGAACTTCCACTTTAGGTGAAAATGAAGC
AGATACTCTGGATACCAGATACTGGTTGGCTCTTCGTCATTACCAGCAAA
ATGATTACAAAAAAGCCATACCAATTTTCCAGGATGTAGCCGAGAAACAA
TCTTCCACTTTAGGTGAGAACCACGAGGATACTCTGAATACCAGATACTG
GTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAAGCCATACCAA
TCTTCCAGGATGTAGCTGACAAACGAACTTCCACTTTAGGTGAAAATGAA
GCAGATACTCTGGATACCAGATACTGGTTGGCTCTTTGTCATTACCAGCA
AAATGATTACAAAAAAGCCATACCAATTTTCCAGGATGTAGCCGAGAAAC
AATCTTCCACTTTAGGTGAGAACCACGAGGATACTCTGAATACCAGATAC
TGGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAAGCCATACC
AATCTTCCAGGATGTAGCTGACAAACGAACTTCCACTTTGGGTGAGAACC
ACGAGGATACTCTGAATACCAGATACTGCTTGGCTCTTTCTTATTTCAAA
CAAAATGATTACCAAAAAGCCATACCAATCTTCCAGGATGTAGCCGATAA
ACGAACTTCCACCATAGGGGAGAACCACGAGGATACTCTGAATACCAGAT
ACTGGTTGGCTCGTTGTTATTACCAACAAAATGATTACCAAAAATCCATA
CCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCACTTTAGGGGAGAA
CCACAAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTGTCATTACC
AGCAAAATGATTACAAAAAAGCCATACCAATTTTCCAGCATGTAGCCGAC
AAACAGTCTTCCACTTTAGGGAAGAACCACAAGGATACTCTGAATACCAG
ACACATGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAATCCA
TACCAATTTTCCAGCATGTAGCCAACAAACAGTCTTCCACTTTAGGGAAG
AACCACAAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTGTTATTA
CGAACAAAATGATTACCAAAAAGCCATACCAATTTTCCAGCATGTAGCCG
ACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGGATACTCTGAATACC
AGATACTGGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAAGC
CATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCACTTTAGGGA
AGAACCACAAGGATACTCTGAATACCAGACACATGTTGGCTTTTTGTTAT
CACCAACAAAATGATTACCAAAAAGCCATACCAATTTTCCAGGATGTAGC
CGACAAACAAACCTCCACTATAGGGGAGAACCACGAGGATACTCTGAATA
CCAGATACTGGTCGGCTCGTTGTTATTTCAAACAAAATGATTACCAAAAA
GCCATACCAATTTTCCAGGATGTAGCTGAGAAACAAACTTCAACTTTGGG
TGAGAACGACGCAGATACTCTGAATACCAGACACATGTTGGCTCGTTgtt
gttacaaacaaaattaTTACCAAAAAGCCATACCAATTTTCCAGGATGTA
GCTGAGAAACAATCTTCCACTTTGGGTGAGAACGATAAGAATACTCTGAA
TACCAGATACTGGTTAGCTGGTTGTTATTTCAAACAAAATGATTACCAAA
AAGCCATACTTATACTAGAAGACGTCTTTAGAAGACAAACCTCAACGTTA
GGAGGAAACCACAACCAAACTGTTCGAAGCAAGTTTTAGATATTCGATGG
GAAGGCGATCCTTTGGTGAAGAACGCTGTTGAAAATCAAGAAACAATACA
GGATGAAAGCATTGAGAAATTGAAGGGGAAAGTAAATAATCTACGGAGAA
ATGGGGAGTGGGCCGAAGCTATTCCTCTTTATGAAGATATTATTAAGAAA
CAATCTTCCACTTTCGGTGAGAACCACAAGGATACTCTGGATACCAGATA
CTGGTTGGCTCTTTGTCATTGCCAGCAAAATGATTACCAAAAAGCCATAC
CAATTTTCCAGGATGTAGCCGACAAACAATCTTCCACTTCAGGTGAAAAC
GACAAGAATACTCTGAATACCAGATACTGCTTGGCTCTATGTTATTACGA
ACAAAATGATTACCAAAAAGCCATACCAATCTTCCAGGATGTAGCTGACA
AACGAACTTCCACTTTGGGTGAGAACCACGAGGATACTCTGAATACCAGA
TACTGCTTGGCTCTTTGTTATTACGAACAAAATGATTACCAAAAAGCCAT
ACCAATTTTCCAGGATGTAGCTGACAAACGAACTTCCACTTTAGGTGAAA
ATGAAGCAGATACTCTGGATACCAGATACTGGTTGGCTCTTCGTCATTAC
CAGCAAAATGATTACAAAAAAGCCATACCAATTTTCCAGGATGTAGCCGA
GAAACAATCTTCCACTTTAGGTGAGAACCACGAGGATACTCTGAATACCA
GATACTGGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAAGCC
ATACCAATCTTCCAGGATGTAGCTGACAAACGAACTTCCACTTTAGGTGA
AAATGAAGCAGATACTCTGGATACCAGATACTGGTTGGCTCTTTGTCATT
ACCAGCAAAATGATTACAAAAAAGCCATACCAATTTTCCAGGATGTAGCC
GAGAAACAATCTTCCACTTTAGGTGAGAACCACGAGGATACTCTGAATAC
CAGATACTGGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAAG
CCATACCAATCTTCCAGGATGTAGCTGACAAACGAACTTCCACTTTGGGT
GAGAACCACGAGGATACTCTGAATACCAGATACTGCTTGGCTCTTTCTTA
TTTCAAACAAAATGATTACCAAAAAGCCATACCAATCTTCCAGGATGTAG
CCGATAAACGAACTTCCACCATAGGGGAGAACCACGAGGATACTCTGAAT
ACCAGATACTGGTTGGCTCGTTGTTATTACCAACAAAATGATTACCAAAA
ATCCATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCACTTTAG
GGGAGAACCACAAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTGT
CATTACCAGCAAAATGATTACAAAAAAGCCATACCAATTTTCCAGCATGT
AGCCGACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGGATACTCTGA
ATACCAGACACATGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAA
AAATCCATACCAATTTTCCAGCATGTAGCCAACAAACAGTCTTCCACTTT
AGGGAAGAACCACAAGGATACTCTGAATACCAGATACTGGTTGGCTTTTT
GTTATTACGAACAAAATGATTACCAAAAAGCCATACCAATTTTCCAGCAT
GTAGCCGACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGGATACTCT
GAATACCAGATACTGGTTGGCTTTTTGTTATCACCAACAAAATGATTACC
AAAAAGCCATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCACT
TTAGGGAAGAACCACAAGGATACTCTGAATACCAGACACATGTTGGCTTT
TTGTTATCACCAACAAAATGATTACCAAAAAGCCATACCAATTTTCCAGG
ATGTAGCCGACAAACAAACCTCCACTATAGGGGAGAACCACGAGGATACT
CTGAATACCAGATACTGGTCGGCTCGTTGTTATTTCAAACAAAATGATTA
CCAAAAAGCCATACCAATTTTCCAGGATGTAGCTGAGAAACAAACTTCAA
CTTTGGGTGAGAACGACGCAGATACTCTGAATACCAGACACATGTTGGCT
CGTTgttgttacaaacaaaattaTTACCAAAAAGCCATACCAATTTTCCA
GGATGTAGCTGAGAAACAATCTTCCACTTTGGGTGAGAACGATAAGAATA
CTCTGAATACCAGATACTGGTTAGCTGGTTGTTATTTCAAACAAAATGAT
TACCAAAAAGCCATACTTATACTAGAAGACGTCTTTAGAAGACAAACCTC
AACGTTAGGAGGAAACCACAACCAAACTGTTCGAAGCAAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000115_pilon | genome | sc0000115_pilon:277635..281996 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 541-2895:2008 |
| Aaloc | 1-537:1 |
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