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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014145 ID=TCONS_00014145|Name=TCONS_00014145|organism=Clytia hemisphaerica|type=transcript|length=597bp
TggaaagaaacttttgaaaatgacaTCATTAACAAAAAGGTTGTTATCTG
TTTACAGAAAGATAATTTataacaaattaaatttcagaTTTAAAAGGGAC
TAGATTTTTATGAGGAATACAAAGCAATTTTAAAATTAAGTGTTTACTTT
TCTATAaggaatttcatatttttagaagttaaaaaaaaaaaagaatctat
AATGGAGGCATTATTAGCAGAAATGGAACGAAAGCGGAAGCAAGTGGATA
AGTGCGAAGTGACATCGAAAAAGAAGTTTTTCAAACGAGGTGATTTGGCA
GCCAAACAGGCAGAAGATTACAAGAAGAAGGAACAAGAAAGGCTTGCAAA
GAAAGGCCTTCTCAAAGAGAAAGAACAAGAGGAAGCAGACAGGAGTGAAT
ATATCAGGAGCATCATCAAAACTAAACCTGGCAAATCAGAAACACAAACC
AATTATAAAGACATTCCACACAGTGAAGTACAGAAACGTTTACGAGAACG
AGGCGAACCAATCAGATTGTTCGGTGAAACGATCGAAGAAACATGTCAAC
GGTTACGTCTAGTTGAAATGACTGTTAAAGACGATGCTAAAGGTTAG Run BLAST on NCBI protein sequence of TCONS_00014145-protein >TCONS_00014145-protein ID=TCONS_00014145-protein|Name=TCONS_00014145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MEALLAEMERKRKQVDKCEVTSKKKFFKRGDLAAKQAEDYKKKEQERLAK
KGLLKEKEQEEADRSEYIRSIIKTKPGKSETQTNYKDIPHSEVQKRLRER
GEPIRLFGETIEETCQRLRLVEMTVKDDAKG Run BLAST on NCBI transcript from alignment at sc0000181:347783..349852- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014145 ID=TCONS_00014145|Name=TCONS_00014145|organism=Clytia hemisphaerica|type=transcript|length=2070bp|location=Sequence derived from alignment at sc0000181:347783..349852- (Clytia hemisphaerica)
TGGAAAGAAACTTTTGAAAATGACATCATTAACAAAAAGGTTGTTATCTG
TTTACAGAAAGATAATTTATAACAAATTAAATTTCAGATTTAAAAGGGAC
TAGATTTTTATGAGGAATACAAAGCAATTTTAAAATTAAGTGTTTACTTT
TCTATAAGGAATTTCATATTTTTAGAAGTTAAAAAAAAAAAAGAATCTAT
AATGGAGGCATTATTAGCAGAAATGGAACGAAAGCGGAAGCAAGTGGATA
AGTGCGAAGTGACATCGAAAAAGAAGTTTTTCAAACGAGGTGATTTGGCA
GCCAAACAGGCAGAAGATTACAAGAAGAAGGAACAAGAAAGGCTTGCAAA
GAAAGGCCTTCTCAAAGAGAAAGAACAAGAGGAAGCAGACAGGAGTGAAT
ATATCAGGTACGTTTCCTCTTCTTTTTAAAAATGTGTTTTTTCATCTAAC
AGGAACTGAAAGCAAGGGTATATTATAATGCCTTGGCTATTGTGACTCAG
TCCAAATCCCAGTCTTATTAGGCTCAGAAACAAAAACATGCGATTTCTTT
CCAAACAAGTTTTCCATAGTAACAGTAAAGATTTTATGCAGTCCCTGTCC
CACAGAATGCAGATGCCCCACAGGTTTTTTGGAAAATTGGCTATAAGTAT
CATTTCATTGCAAATGGTTGCTATTTTTTTGGACCTACCTCCGGGTACCC
CGGTGGAAGTTCTATAAATTAACCCATGTCTGTTCGTTCGTCCGTCCGTC
CGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCTGTTACCAGCTTTTCTCA
GGATTGGCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATGG
CAATGCCCAGAACGTGACGGAGACCGATTTTTGAGAAAAAATTTATTTGG
GCAAATTTGGGCCAAAAACTACCTAAAAATAGGGTTTTTTGGACTTTGTG
CAAAATCCTGTCATTACTTTTTTCTGATTTTTTTTACAAAGATGGAAGGC
AAGATTCTCTAAAGAATGACTGAAGTGGTTTTTCCCGGAAAATTCTTAGC
CGCCTTAAAAAACGGATTCTCGTATTTTGGGGGAATTCCCTTTAACCAAA
TAAGAAAATATAGCTTTTCTCAATGTTGACTCATAATTTTTTTCTGATTT
TTTGCACAAAATGTGACGGAGCCAGATTTTTAAGGCAAATTCTTTTGGGC
AAATTTGGGCCAAAAACTGCTAAAAATAGGGTTTTTTGGGCCTGAATGGT
TTAAGTGATTTTCGTATTTGGGGAAATTCCTTTTTACCATTTTACATTAT
TCAACACACAAGCTTTATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTTTTCACATCACAACACACCCTTAAGAATTCTTACTTTTTTTA
AATAAAGGTAGTTAACGTGGGGAACCCGAAACAAAAAGAATTGACTTTCT
AACCATCAAAAAACTTTTAAAATTAAATGAAATGCAGACTGTGTAGAGGA
TATCTGATTCCACCATACTTAATGATTATTTTCTAAGTTGCATTTTTCCA
GACTAAAACAGCCTGAATTTTAACTCAAAAAACCTTGTTATTTTATTGTA
AATCTTCAATTTTTCATAGACTATTATAAAGGAAAGTAGCATTAAAAATC
CTTCTGACTTCATGACTTTTCTTTTGATAGGAGCATCATCAAAACTAAAC
CTGGCAAATCAGAAACACAAACCAATTATAAAGACATTCCACACAGTGAA
GTACAGAAACGTTTACGAGAACGAGGCGAACCAATCAGATTGTTCGGTGA
AACGATCGAAGAAACATGTCAACGGTTACGTCTAGTTGAAATGACTGTTA
AAGACGATGCTAAAGGTTAG Coding sequence (CDS) from alignment at sc0000181:347783..349852- >TCONS_00014145 ID=TCONS_00014145|Name=TCONS_00014145|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000181:347783..349852- (Clytia hemisphaerica)
GAGCATCATCAAAACTAAACCTGGCAAATCAGAAACACAAACCAATTATA
AAGACATTCCACACAGTGAAGTACAGAAACGTTTACGAGAACGAGGCGAA
CCAATCAGATTGTTCGGTGAAACGATCGAAGAAACATGTCAACGGTTACG
TCTAGTTGAAATGACTGTTAAAGACGATGCTAAAGGTTAGATGGAGGCAT
TATTAGCAGAAATGGAACGAAAGCGGAAGCAAGTGGATAAGTGCGAAGTG
ACATCGAAAAAGAAGTTTTTCAAACGAGGTGATTTGGCAGCCAAACAGGC
AGAAGATTACAAGAAGAAGGAACAAGAAAGGCTTGCAAAGAAAGGCCTTC
TCAAAGAGAAAGAACAAGAGGAAGCAGACAGGAGTGAATATATCAGGAGC
ATCATCAAAACTAAACCTGGCAAATCAGAAACACAAACCAATTATAAAGA
CATTCCACACAGTGAAGTACAGAAACGTTTACGAGAACGAGGCGAACCAA
TCAGATTGTTCGGTGAAACGATCGAAGAAACATGTCAACGGTTACGTCTA
GTTGAAATGACTGTTAAAGACGATGCTAAAGGTTAGATGGAGGCATTATT
AGCAGAAATGGAACGAAAGCGGAAGCAAGTGGATAAGTGCGAAGTGACAT
CGAAAAAGAAGTTTTTCAAACGAGGTGATTTGGCAGCCAAACAGGCAGAA
GATTACAAGAAGAAGGAACAAGAAAGGCTTGCAAAGAAAGGCCTTCTCAA
AGAGAAAGAACAAGAGGAAGCAGACAGGAGTGAATATATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014145-exon-sc0000181-1575043694:349446..349852 | TCONS_00014145-exon-sc0000181-1575043694:349446..349852 | Clytia hemisphaerica | exon |
| TCONS_00014145-exon-sc0000181-1575043694:347783..347972 | TCONS_00014145-exon-sc0000181-1575043694:347783..347972 | Clytia hemisphaerica | exon |
| TCONS_00014145-exon-sc0000181-1510915933:349446..349852 | TCONS_00014145-exon-sc0000181-1510915933:349446..349852 | Clytia hemisphaerica | exon |
| TCONS_00014145-exon-sc0000181-1510915933:347783..347972 | TCONS_00014145-exon-sc0000181-1510915933:347783..347972 | Clytia hemisphaerica | exon |
| TCONS_00014145-exon-sc0000181-1491911889:349446..349852 | TCONS_00014145-exon-sc0000181-1491911889:349446..349852 | Clytia hemisphaerica | exon |
| TCONS_00014145-exon-sc0000181-1491911889:347783..347972 | TCONS_00014145-exon-sc0000181-1491911889:347783..347972 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:347783..349852 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014906 | PRP4-like |
Blast
The following BLAST results are available for this feature:
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