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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014162 ID=TCONS_00014162|Name=TCONS_00014162|organism=Clytia hemisphaerica|type=transcript|length=2101bp
CTATGTacatcaaaacatatcaaaggGGACCACTGTAGCCTAAAATCAAG
GTTAAGTGGAAGAGTGTAGCCTTCGGGTCGTTTCCCGCTTCAGTCTAAAA
CCTAACTATTTTTGAAGGTATTTTTTAAGATATAAGTTAGAGTCTCCTTT
ACTCCAAATTATGTATCTCGAATAATTTCTTAACTTGAACGGCTCTTNTG
TGTAGTGGAGGCTTATTTAAAGGGAAGATGCTATCGGGACTCAATGGTTA
CAGAACAAGAGTTGGAAATCTTCATTTTGCATAATAATGGTATTTTAACA
CTGAGTATAATACTAACCGAAATGTAAATAAACTTGAATCATTTTGAAAA
GGGCATTATATTTGTTGAAAAGGCAAAAGGCCCTGATTTGTAATACTACT
ATGTGGTTATTTGtaaagaaaattattgataTGATAGAATCGAAACGCTT
CTCTTTCAATGCAACATTCATCGGCCAAAAAAATAGATCCATTAGAATTT
AGATGTAGATCTTTGATGACTGTACAACGAAAGATATTGTTAAAAGCTAA
AGAGTATTTTCCTCGATTTCGAAACCATTAAATAGCAGTTTAATCGATCG
AtttgatacaccttttcgaccgtagtcgtgcGGTCagacgcgtgccactt
tattatttaatttaccaccctaaactcaatccaatcctttttcatatttc
ttttctattgtctttaggtgcgaaaaaaagactgggacggttttagggtg
gtaaaacggacaaaaaattcccgcgcggcaattggtggctacggtcgaaa
aggtgtattttttggaatttgaattttcttctgACTGAACCCTTTTCAAC
TGTCGCTGATCTaatgttttcaatatttcaatttgatgTTCTACTGTTTC
AATTGTATTTTCATCTTAAGTCCATTCATGGATACAACTTTTGTCAGCTC
CTCTTTCATGGATTCGCAGTTGAAGCATCCATCGTCCTCAGTTATTTCTC
TGTTACTCTTTTGGAACGCTTCTTCATCTCTGTGAGTTCCTTTGTTTGGT
TGTAGAGGACTTTCGTTAGCCAGTAGAAGTATTTCATTATCTCTCCTTAA
GTATTCGTCTTTCAAATTTCGACGGCACGTGTAGAATTTGTCATTTCGAC
CACCCACCAGATTCGTAAAATCATCATCCTCAAATAAAGATGGGAAAACC
GATTGATCCGAATCGGTAGatcgggaactgtcgaaatctGATAAGCTATC
CCGATTGCTTGCCGACGATTTGTCGTTTTCACTACTACCTTCGCTATCTT
CACTTGACGAACTTGAATCTTCGTATTCGATCGATAATGTTTGCTCCAAG
TCGGACACTTTTTTATCGTGAGAATCGATTCTTTGTTTTGTACTTTCGAT
TTGTTCTTCGACTGACTTAATGCGTTCACGTAGTTTATTCATTCGCTCTT
TTTCTGATTGGTGATGTTCTTCACTGAATATTTCATCCActttttccact
ttttcacagttttgttgttttttgctaCTGATTTCTTGAGAAACGATTTC
AGCGAATGAGAATTCTTCCTCGTTCTCAAAAGAAATGTAATCTGAAGGTT
CAATATGACTGCAGTAAAACGGGTCAAGATTCAAAAGTTCAGAATCAGAG
CTGTGGTCACCATAGATCTCTGGTAGAATCGATTCGGTAAGACCTTCACT
GGAGTCTGATTCAGTTGATTGGTTACTGGATGACGTATCGTCGTAATTGA
AGGTCGAATTTCTATGATTCCAAATATTCGGTTTTGGTGAATGATGGTCA
CTATCACTAGACGACGTCATACTATCGTTGGTGAacgattttgaattttc
atttattaGATGTCCGGTGATTCCCGGAGTTGATTGCAGAGACGAATCTG
CAGAATCTGTTGTCGAGAGTTCACAATTGATATCTGTTAGAGAATCTGat
tgttttgcttgaaataAATTCAAACTCCATTGTTTCCAATCGTGGAAGTC
CTTGTTTAGTTCTCCTTTTAAAATGTAGTCCATTACAGCAACCTAGCCTA
GATCTTTCGTGGTGTATATTTTTACAAACAGGAAAATGCTGTAAAACCTT
T Run BLAST on NCBI protein sequence of TCONS_00014162-protein >TCONS_00014162-protein ID=TCONS_00014162-protein|Name=TCONS_00014162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MDYILKGELNKDFHDWKQWSLNLFQAKQSDSLTDINCELSTTDSADSSLQ
STPGITGHLINENSKSFTNDSMTSSSDSDHHSPKPNIWNHRNSTFNYDDT
SSSNQSTESDSSEGLTESILPEIYGDHSSDSELLNLDPFYCSHIEPSDYI
SFENEEEFSFAEIVSQEISSKKQQNCEKVEKVDEIFSEEHHQSEKERMNK
LRERIKSVEEQIESTKQRIDSHDKKVSDLEQTLSIEYEDSSSSSEDSEGS
SENDKSSASNRDSLSDFDSSRSTDSDQSVFPSLFEDDDFTNLVGGRNDKF
YTCRRNLKDEYLRRDNEILLLANESPLQPNKGTHRDEEAFQKSNREITED
DGCFNCESMKEELTKVVSMNGLKMKIQLKQ Run BLAST on NCBI transcript from alignment at sc0000181:345347..347447 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014162 ID=TCONS_00014162|Name=TCONS_00014162|organism=Clytia hemisphaerica|type=transcript|length=2101bp|location=Sequence derived from alignment at sc0000181:345347..347447 (Clytia hemisphaerica)
AAAGGTTTTACAGCATTTTCCTGTTTGTAAAAATATACACCACGAAAGAT
CTAGGCTAGGTTGCTGTAATGGACTACATTTTAAAAGGAGAACTAAACAA
GGACTTCCACGATTGGAAACAATGGAGTTTGAATTtatttcaagcaaaac
aatCAGATTCTCTAACAGATATCAATTGTGAACTCTCGACAACAGATTCT
GCAGATTCGTCTCTGCAATCAACTCCGGGAATCACCGGACATCtaataaa
tgaaaattcaaaatcgtTCACCAACGATAGTATGACGTCGTCTAGTGATA
GTGACCATCATTCACCAAAACCGAATATTTGGAATCATAGAAATTCGACC
TTCAATTACGACGATACGTCATCCAGTAACCAATCAACTGAATCAGACTC
CAGTGAAGGTCTTACCGAATCGATTCTACCAGAGATCTATGGTGACCACA
GCTCTGATTCTGAACTTTTGAATCTTGACCCGTTTTACTGCAGTCATATT
GAACCTTCAGATTACATTTCTTTTGAGAACGAGGAAGAATTCTCATTCGC
TGAAATCGTTTCTCAAGAAATCAGtagcaaaaaacaacaaaactgtgaaa
aagtggaaaaagTGGATGAAATATTCAGTGAAGAACATCACCAATCAGAA
AAAGAGCGAATGAATAAACTACGTGAACGCATTAAGTCAGTCGAAGAACA
AATCGAAAGTACAAAACAAAGAATCGATTCTCACGATAAAAAAGTGTCCG
ACTTGGAGCAAACATTATCGATCGAATACGAAGATTCAAGTTCGTCAAGT
GAAGATAGCGAAGGTAGTAGTGAAAACGACAAATCGTCGGCAAGCAATCG
GGATAGCTTATCagatttcgacagttcccgatCTACCGATTCGGATCAAT
CGGTTTTCCCATCTTTATTTGAGGATGATGATTTTACGAATCTGGTGGGT
GGTCGAAATGACAAATTCTACACGTGCCGTCGAAATTTGAAAGACGAATA
CTTAAGGAGAGATAATGAAATACTTCTACTGGCTAACGAAAGTCCTCTAC
AACCAAACAAAGGAACTCACAGAGATGAAGAAGCGTTCCAAAAGAGTAAC
AGAGAAATAACTGAGGACGATGGATGCTTCAACTGCGAATCCATGAAAGA
GGAGCTGACAAAAGTTGTATCCATGAATGGACTTAAGATGAAAATACAAT
TGAAACAGTAGAAcatcaaattgaaatattgaaaacattAGATCAGCGAC
AGTTGAAAAGGGTTCAGTcagaagaaaattcaaattccaaaaaatacacc
ttttcgaccgtagccaccaattgccgcgcgggaattttttgtccgtttta
ccaccctaaaaccgtcccagtctttttttcgcacctaaagacaatagaaa
agaaatatgaaaaaggattggattgagtttagggtggtaaattaaataat
aaagtggcacgcgtctGACCgcacgactacggtcgaaaaggtgtatcaaa
TCGATCGATTAAACTGCTATTTAATGGTTTCGAAATCGAGGAAAATACTC
TTTAGCTTTTAACAATATCTTTCGTTGTACAGTCATCAAAGATCTACATC
TAAATTCTAATGGATCTATTTTTTTGGCCGATGAATGTTGCATTGAAAGA
GAAGCGTTTCGATTCTATCAtatcaataattttctttaCAAATAACCACA
TAGTAGTATTACAAATCAGGGCCTTTTGCCTTTTCAACAAATATAATGCC
CTTTTCAAAATGATTCAAGTTTATTTACATTTCGGTTAGTATTATACTCA
GTGTTAAAATACCATTATTATGCAAAATGAAGATTTCCAACTCTTGTTCT
GTAACCATTGAGTCCCGATAGCATCTTCCCTTTAAATAAGCCTCCACTAC
ACANAAGAGCCGTTCAAGTTAAGAAATTATTCGAGATACATAATTTGGAG
TAAAGGAGACTCTAACTTATATCTTAAAAAATACCTTCAAAAATAGTTAG
GTTTTAGACTGAAGCGGGAAACGACCCGAAGGCTACACTCTTCCACTTAA
CCTTGATTTTAGGCTACAGTGGTCCcctttgatatgttttgatgtACATA
G Coding sequence (CDS) from alignment at sc0000181:345347..347447 >TCONS_00014162 ID=TCONS_00014162|Name=TCONS_00014162|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at sc0000181:345347..347447 (Clytia hemisphaerica)
ATGGACTACATTTTAAAAGGAGAACTAAACAAGGACTTCCACGATTGGAA
ACAATGGAGTTTGAATTtatttcaagcaaaacaatCAGATTCTCTAACAG
ATATCAATTGTGAACTCTCGACAACAGATTCTGCAGATTCGTCTCTGCAA
TCAACTCCGGGAATCACCGGACATCtaataaatgaaaattcaaaatcgtT
CACCAACGATAGTATGACGTCGTCTAGTGATAGTGACCATCATTCACCAA
AACCGAATATTTGGAATCATAGAAATTCGACCTTCAATTACGACGATACG
TCATCCAGTAACCAATCAACTGAATCAGACTCCAGTGAAGGTCTTACCGA
ATCGATTCTACCAGAGATCTATGGTGACCACAGCTCTGATTCTGAACTTT
TGAATCTTGACCCGTTTTACTGCAGTCATATTGAACCTTCAGATTACATT
TCTTTTGAGAACGAGGAAGAATTCTCATTCGCTGAAATCGTTTCTCAAGA
AATCAGtagcaaaaaacaacaaaactgtgaaaaagtggaaaaagTGGATG
AAATATTCAGTGAAGAACATCACCAATCAGAAAAAGAGCGAATGAATAAA
CTACGTGAACGCATTAAGTCAGTCGAAGAACAAATCGAAAGTACAAAACA
AAGAATCGATTCTCACGATAAAAAAGTGTCCGACTTGGAGCAAACATTAT
CGATCGAATACGAAGATTCAAGTTCGTCAAGTGAAGATAGCGAAGGTAGT
AGTGAAAACGACAAATCGTCGGCAAGCAATCGGGATAGCTTATCagattt
cgacagttcccgatCTACCGATTCGGATCAATCGGTTTTCCCATCTTTAT
TTGAGGATGATGATTTTACGAATCTGGTGGGTGGTCGAAATGACAAATTC
TACACGTGCCGTCGAAATTTGAAAGACGAATACTTAAGGAGAGATAATGA
AATACTTCTACTGGCTAACGAAAGTCCTCTACAACCAAACAAAGGAACTC
ACAGAGATGAAGAAGCGTTCCAAAAGAGTAACAGAGAAATAACTGAGGAC
GATGGATGCTTCAACTGCGAATCCATGAAAGAGGAGCTGACAAAAGTTGT
ATCCATGAATGGACTTAAGATGAAAATACAATTGAAACAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014162-exon-sc0000181-1491911889:345347..347447 | TCONS_00014162-exon-sc0000181-1491911889:345347..347447 | Clytia hemisphaerica | exon |
| TCONS_00014162-exon-sc0000181-1510915933:345347..347447 | TCONS_00014162-exon-sc0000181-1510915933:345347..347447 | Clytia hemisphaerica | exon |
| TCONS_00014162-exon-sc0000181-1575043694:345347..347447 | TCONS_00014162-exon-sc0000181-1575043694:345347..347447 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:345347..347447 . |
Blast
The following BLAST results are available for this feature:
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