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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000007_pilon:1112197..1116873+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042527 ID=XLOC_042527|Name=XLOC_042527|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4677bp|location=Sequence derived from alignment at sc0000007_pilon:1112197..1116873+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTTTCCATCACTTCACAAGCATGGTTGGTGTGATTGAAGAACAAAC
GACACGTGATAAGGATGTTGATGGACGCCATAGCCATTTGAAAGCAGAGA
AGAAATTTCTTTCCAATCTTGATAAACATATCAATAAAAACATGGAAGAG
GATACCATTAATCCCACAGAGAAAATAGGTACTCCCCTCTTCCTGCTATA
TCATTGCTATTTGTCAGCCAGAATTTTGAACGAAATTTTCGTCAGTCAAA
CAAAACTCAAATACGCCAGAACGTTAGTTGTTATAAAGTTGAATGCCATC
TTTAACAACGTCGTGTTAAAAATCCTAtactttctaaatttttattttag
agaaCTTGAACCGAATCAGTGGTTTTGGGATCGGTGTGGGAAGGTAGGAA
TGATGttaaattcttgagaaaaactgTAAATTGTACCGATATAAGAATAA
TTGAAGCTTTGGAGTTTGGCATGACtttttttGTCAACTTATATTTACTT
TCACAATGAAATTACTTTGACACCTTAtaatctttgacaaattttgttca
aaaagaacaaaaagatcAAAAGGTGCTACAGAAATTCCTTTCCTCCCTCC
TTAtgctgaaccgcccctaaagaCCTAGTAACACGGCCAAGTGCGTAAGC
TAACGAATATTTAAAATGCAACTCAACTAAATCTCactcactttttttta
tttcagtttataTTTACAAGAAGCACTTGGTTATCCATTTCTTGTTCTCC
AAAGACAATGTCAAGTAATTTGTTTTTTCTCTCCTcgttaatttcttttt
cttcgtcAATGTTTCTTAGAATCATTCAATGATCAAATATGACCAAAAGA
TCAAACAAAATCACTAACATTTTGCACGATagcaaaaaattaataaaata
agcTGATACTAAGTTTACTCTTGCTGaaagtaaaaaacaaattttttcta
gTTCCATGAATACAATCTTTTGAAAGAGGAAGTGAAAAAGCTTTACCTGT
TGATACATCTTGTTTTTGTAGGTAAACAATGCTTCTTTGAAATACCACGT
CCAACCATTCTCTTTGTTTCCAGTCATCAACAAAATGCATCAGCGACAGG
TAAGCACATGGTTTTGATCAGGTTTCCATACTGTATGATGTTACTTACAA
AATGTAGTATTTTTGAACGATGCTCCGTCTCTGTCTTAAAAACTTTTCCT
TGATCTATTATGAAGTCTGTTTTGTATTTGCAATTTTCATTAACTTTTCA
TTAcgaaaaaattacgaaaaaccCATTTAGGCTTTCAGCTGTTTTAGGCT
TGTTTGCTTtgattatcaaaaaatttcaatattccaaaaaattgtACTAC
TTTAGAAAAACTTATGGACCAAATATGAGCTCCCtgtgttctcttttttt
tcaaaataattgcaGTACCTCTAATACTTAACGCTACGCTACGGTGTGAA
AGTAAAGAAACTCAGCTTGATTCTGatcccaatcaaaaataaacccctgt
tttgtgacatttttactgtcagccACTAATTTACCATAACTTGGGAAAAT
TATGTGGCTTACACTTAAGATCGCTTTGATGGTTAAGATGAGGAAATTAG
CTATCCATTGCATAAAGGGTGAATTTTTGTGGCTTACTTAAAGGGGAGTT
ACAAGCAAATGAAGTGTGGaaaaaaaaTGTGGCTTACTGGTCATATGGCT
TACCCtaccaagaaattttgaaggCTGAGTTGTCAATAATGGAAACAGTC
AgaaatatactttcttttcagCATTGCCAGCAAAGGGCTAAATTTTTTGA
TAGCTGCGCTGATTTGTGGCTTACAGTTTGTTAAGTGGGCAAAAATATGG
CTTACACAAGGGAAATATAAGTGAATAGGTGAAATATAGGTGAAATTTAA
TGTCtcacattttttaagtttttggcaCTCAATCATTAAAGTATAACATC
AATAGgtgtaaaaaattacaaaaattttgttgtAAGTACAATTTTGTGGC
TTACAAAGTCACATTAAAATTATCGAAACGTAAGCCACAAAAACTACATT
TAATATAACAGCTAGaaagtatgtacatttaacatttttttttaaattca
acctttcctttGTCAAGTTAAGAAAGTCCCATTCTAAGATCTCTTATCTA
ATTTCTAATtacatttctaaaaaagatacaaattttgagttgaagccaca
tttttagCCCAATTAACGaaaaaaaaGGttgtttttgggcatttttcaaa
atgtcacactatttttgattgggatcttctttcttttttaaattgtgGCG
GCAATTTTTGAGAAAGCGAGAAAAAAGGATAGACAACATCTAGGGAAGAA
TATTTTTCCAGTTTAGAAAGGACTTTCCACACAAATGTATCCATGGTAAC
AACAACCGAGATATATCCTCGGGATACGAGGAAAAATTTACATTATCATC
ATCGTCATTGTCCCAAgaaattttcacttaaaatcATTGCAAAAATTACT
CCCATTGTTTTCCCAATTTTCCAGAATATCGGTGCATTTTGGAAAGGATG
GGGAAGTTCTGGACTTGTCAAAGGACTGACGATTGGAacagaaatcgtca
tttttgaaCTGTGCAATGTTCCAAGGTACGCCACTTTTCATTTATGGTCG
AACTTATTCTCAATTCCCCTTGATTTACAATTTGAGAATATGTATTTGTG
CGTGCGTGTCTGTTTGTTTGTCCCCTCAAAACTTTTGGTAGCCTAGAAAC
TATGACTATTTAGCTAAAGTTTGTGTTTTTTCAAtatacaaaaattttga
tttctgtaCCTTGGAGCGGGCTTTCGAGACAAAACGAGACTAAAAATTTA
GGGGGAGCCTGGAAACTGTATTACGGTGTAACGGTATTATTTGACCACAC
ActtgataaataaataaattgataaataaaGCTATTGAAGCTGAATCGTT
GCGCAAGTTCGGTTAAGTCATAAGACATCCCTAGACGTCGGTAGAGCTTT
TTTCCAATGTAGGTTAGTTgacatttttctgattttataaAATTCAAGTG
TaatatttccagaaaaatattatGACGGATTAGTAGGGCGTTGGTGCTAC
CTGCTGGATTGCTAACGATCTTTGATTAATTTAGATGGCTTCTGTAAGCC
AGTTAAATTGgtcatgtacacgtttttttttttttaagaaactagtttta
ctaagcagcctcaatgtttcttaagaaatcggccttttgagccttaaatg
tttcttacatgtttctaaactttttgaccatAATCAGCCATAttgaaggc
tggattggaaggttcttaaaaacaaccgaattaaaaaatgttattttgtc
ATTCTCAGCcttagcatgtttcttagatgtttcttaatttttaggcattc
tgagcctcatgtttcttaaaagtgtgtttcttaaaaaaaaaaaacgtgta
ttttattCTGTTCTAGAGAAGAGACGAAACAAGAAAATGATAAGAAAAGG
ACGATTATCCACGAAACATTGAAAGGGTAAGGTTTATTATCTTCGTTGGG
TGTTATTCTTACCACGTGACATGTATTGTATTTGCCATCCGACTCTTACG
ACTTTAAGAGGGACTGACAAAGCTGACTGAAGAAACCTCGAAAAATCAGa
tcatttaatttttaaagcaaattctgttaaattttctttttctactaTCT
TTTGTAGAGCCAGTTTGTTGATGACGCTCCCTTTCTTCTCTGCAAGTCTC
ATCGATACTGTGCAGGTAAGATACATACAGAAGGTACACAATCATTTTGT
GTGGAGAGTATTCATTCCCATAAAAGGATAACGGATAATACCGAAAGAAC
CATCCTCTATCATTTATTCTGAGTGCCTTCTATAACCGCCGCCTGTAACG
AGGGTTTTTAATTCCATTCGCGTCCAAGAGaaaaaaaTGCTACGTTTGAC
AAGTTCAAAAAGCTATTCACTAAAATTTATACCAAGAATTTAGTGAAAGC
TCGCTTAGCTTGCAATCAAATCGACTATTTCGTCGGACAGCATGTTGATA
AGAATTTTTGCGCGAACATCATTTTAGGGAGGACACGAATAATTTGTTCT
GTTTTCTTCACTGCAGACACTTGTTCTTGGTGAGCCGCGTTCCATCCTGA
CTTTCTTCAAAGATGCGTTCTATCGATTGATTGGCTGGTACACATCACGT
GGTCATGGACGTCTTATATCATTCTACTCGTTGGTATTACCGAGCATTTT
ATACGGTGTTTTGCGCTACTCCGTCAAAGTATTTCTATCTTCATACATAC
TAGCCATTCGGTCTCCTACAAAGGTTGAGACGAACAATGAACAAGAATCA
ACGGCCAGTATGAGAGCTTTATACTACGCTGAACTTTCGTCAAATTTCAT
GGCCTCCTTGCTTACAGATGTCATGTTGTTTCCTTTGGAAACGGTGTTTC
TACGGCTTCACTTGCAAGGAACGCGTACTATAATTGACGATACGGATAAA
GGGTATGGTGTAGTACCACTGTGCACCTCGTATGATGGTGTAACGGATTG
TTTTAATACCATTCAAAGACAGGAAGGGTTTTCCGGGTTTTATAAAGGCT
TCGGCGCCCTATGTTTACAATACTTTGTGCAATTTATAATCCTGAAAGGT
GCAAAGATATTTTATTCCGGTGTGTGA Coding sequence (CDS) from alignment at sc0000007_pilon:1112197..1116873+ >XLOC_042527 ID=XLOC_042527|Name=XLOC_042527|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2274bp|location=Sequence derived from alignment at sc0000007_pilon:1112197..1116873+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTTTCCATCACTTCACAAGCATGGTTGGTGTGATTGAAGAACAAAC
GACACGTGATAAGGATGTTGATGGACGCCATAGCCATTTGAAAGCAGAGA
AGAAATTTCTTTCCAATCTTGATAAACATATCAATAAAAACATGGAAGAG
GATACCATTAATCCCACAGAGAAAATAGATGGTTTTCCATCACTTCACAA
GCATGGTTGGTGTGATTGAAGAACAAACGACACGTGATAAGGATGTTGAT
GGACGCCATAGCCATTTGAAAGCAGAGAAGAAATTTCTTTCCAATCTTGA
TAAACATATCAATAAAAACATGGAAGAGGATACCATTAATCCCACAGAGA
AAATAGagaaCTTGAACCGAATCAGTGGTTTTGGGATCGGTGTGGGAAGa
gaaCTTGAACCGAATCAGTGGTTTTGGGATCGGTGTGGGAAGtttataTT
TACAAGAAGCACTTGGTTATCCATTTCTTGTTCTCCAAAGACAATGTCAA
tttataTTTACAAGAAGCACTTGGTTATCCATTTCTTGTTCTCCAAAGAC
AATGTCAAGTAAACAATGCTTCTTTGAAATACCACGTCCAACCATTCTCT
TTGTTTCCAGTCATCAACAAAATGCATCAGCGACAGGTAAACAATGCTTC
TTTGAAATACCACGTCCAACCATTCTCTTTGTTTCCAGTCATCAACAAAA
TGCATCAGCGACAGAATATCGGTGCATTTTGGAAAGGATGGGGAAGTTCT
GGACTTGTCAAAGGACTGACGATTGGAacagaaatcgtcatttttgaaCT
GTGCAATGTTCCAAGAATATCGGTGCATTTTGGAAAGGATGGGGAAGTTC
TGGACTTGTCAAAGGACTGACGATTGGAacagaaatcgtcatttttgaaC
TGTGCAATGTTCCAAGAGAAGAGACGAAACAAGAAAATGATAAGAAAAGG
ACGATTATCCACGAAACATTGAAAGGAGAAGAGACGAAACAAGAAAATGA
TAAGAAAAGGACGATTATCCACGAAACATTGAAAGGAGCCAGTTTGTTGA
TGACGCTCCCTTTCTTCTCTGCAAGTCTCATCGATACTGTGCAGAGCCAG
TTTGTTGATGACGCTCCCTTTCTTCTCTGCAAGTCTCATCGATACTGTGC
AGACACTTGTTCTTGGTGAGCCGCGTTCCATCCTGACTTTCTTCAAAGAT
GCGTTCTATCGATTGATTGGCTGGTACACATCACGTGGTCATGGACGTCT
TATATCATTCTACTCGTTGGTATTACCGAGCATTTTATACGGTGTTTTGC
GCTACTCCGTCAAAGTATTTCTATCTTCATACATACTAGCCATTCGGTCT
CCTACAAAGGTTGAGACGAACAATGAACAAGAATCAACGGCCAGTATGAG
AGCTTTATACTACGCTGAACTTTCGTCAAATTTCATGGCCTCCTTGCTTA
CAGATGTCATGTTGTTTCCTTTGGAAACGGTGTTTCTACGGCTTCACTTG
CAAGGAACGCGTACTATAATTGACGATACGGATAAAGGGTATGGTGTAGT
ACCACTGTGCACCTCGTATGATGGTGTAACGGATTGTTTTAATACCATTC
AAAGACAGGAAGGGTTTTCCGGGTTTTATAAAGGCTTCGGCGCCCTATGT
TTACAATACTTTGTGCAATTTATAATCCTGAAAGGTGCAAAGATATTTTA
TTCCGGTGTGTGAACACTTGTTCTTGGTGAGCCGCGTTCCATCCTGACTT
TCTTCAAAGATGCGTTCTATCGATTGATTGGCTGGTACACATCACGTGGT
CATGGACGTCTTATATCATTCTACTCGTTGGTATTACCGAGCATTTTATA
CGGTGTTTTGCGCTACTCCGTCAAAGTATTTCTATCTTCATACATACTAG
CCATTCGGTCTCCTACAAAGGTTGAGACGAACAATGAACAAGAATCAACG
GCCAGTATGAGAGCTTTATACTACGCTGAACTTTCGTCAAATTTCATGGC
CTCCTTGCTTACAGATGTCATGTTGTTTCCTTTGGAAACGGTGTTTCTAC
GGCTTCACTTGCAAGGAACGCGTACTATAATTGACGATACGGATAAAGGG
TATGGTGTAGTACCACTGTGCACCTCGTATGATGGTGTAACGGATTGTTT
TAATACCATTCAAAGACAGGAAGGGTTTTCCGGGTTTTATAAAGGCTTCG
GCGCCCTATGTTTACAATACTTTGTGCAATTTATAATCCTGAAAGGTGCA
AAGATATTTTATTCCGGTGTGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007_pilon | genome | sc0000007_pilon:1112197..1116873 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 577-1137:4117 |
| Aaloc | 520-576:3709 |
| Aaloc | 460-516:3468 |
| Aaloc | 358-456:2525 |
| Aaloc | 280-357:1022 |
| Aaloc | 223-279:708 |
| Aaloc | 181-219:353 |
| Aaloc | 1-177:1 |
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