|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014103 ID=TCONS_00014103|Name=TCONS_00014103|organism=Clytia hemisphaerica|type=transcript|length=601bp
tttagtGTACTAATACAATAAAAATAACTAAATAGATCAACACAATGCCA
CACTTAAAGATCAGAACCACACAACCTGCTTCAGATTTCGATCAGGAATT
CTTTGATCAAATCACAGATGCAATCGCAGCTGTTAATAACAAACCTAAAA
GTtactTTTTGATCGATTTAAAAGGTGATCAAAAGATGTCTTTTGGTGGC
ACAATGGGGAAGGTTGCCCACGTGACATTTTCGTCGATCGGTAAAATCAA
CGCCGAAATGAACGCCAAGTGTGCAACCGCCATCTTTAAATCGTTGAATG
CAAAAGGAGTTCCCAGTGATAGGATATACATTGAATTTCGTGATCTTTCA
CGTGAAAACACAGCATGGAACAACAAGTTATTCTCCCAATAAAAAAAGGA
CTGGAGCCAACCTGTCAATCGTTGAATCACTAACACTAAAAAGCACGCAT
CATTATTTAGAGATTTCGGATCTTCTTCAAATCGATCAGATAAGGAATAT
GCCCAATAAGAGGCCAATGGCCGTCTACAAATGGCACAGTGACTTTGTTG
TTGCTACGGGTGAAAACATATTTCCACCAAAGAATCAATAAGATTGTTGC
T Run BLAST on NCBI transcript from alignment at sc0000181:45701..49318+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014103 ID=TCONS_00014103|Name=TCONS_00014103|organism=Clytia hemisphaerica|type=transcript|length=3618bp|location=Sequence derived from alignment at sc0000181:45701..49318+ (Clytia hemisphaerica)
tttagtGTACTAATACAATAAAAATAACTAAATAGATCAACACAATGCCA
CACTTAAAGATCAGAACCACACAACCTGCTTCAGATTTCGATCAGGAATT
CTTTGATCAAATCACAGATGCAATCGCAGCTGTTAATAACAAACCTAAAA
GTGTAAGTTCGTTGTTATTTTGAAGCCTTCCAATTTCCATTCAACCTCTG
GCTAATAACTTATTTGTCTCACGACATACCACAATTGACTTTGAttaaaa
ttcctaaaaaaatacattttgtcCAATGCTTTCATTTCGAAAACTTTTAT
GACGCAACATATAATTTCTTACTTTTAAAAGCTTTACTTTTACATGAGTT
TCATAAAggatatttcatatcagggcaATGGTGTAtttatattgtgctga
ataaaaacaaaaattatttttattttcctctttctgaccaatcttgctcc
acatccgtgtcaactTTGAAGAAATTGTCATAAACGTTAGACGTTAGGTG
ttagattttgaagaaaatccCGCTTAACTTACAATAATCagtgtttttac
tttttctttttcagtactTTTTGATCGATTTAAAAGGTGATCAAAAGATG
TCTTTTGGTGGCACAATGGGGAAGGTTGCCCACGTGACATTTTCGTCGAT
CGGTAAAATCAACGCCGAAATGAACGCCAAGTGTGCAACCGCCATCTTTA
AATCGTTGAATGCAAAAGGAGTTCCCAGTGATAGGCAAGTTTTAGTCTGG
ACCATAATAATAATGAAGTCTAAGcacagggggggggggactaaaATGGA
ATCACCTTTATTATATGTAGAATTACACTGTTTCACACATTGAAATTATA
TTGAGCatgatttgaaaattaaaagtgTTTTAACTTTGAACTAGCCAGTA
AAGTTTGGAGGCCACAAGaatgttttgacaaattttctttcttttttatc
tggttatctcacttcaaaaatgtcatttatcATTTTCGACTATTTTTCTA
AATGTCCGGGAATCACATTACTGCAACTATCAAGATGGTGTCTGAGCAGA
GGGGGGGCGTACTTGGTTTGgaaggtgacgggtatgtccgagccaaagag
CCTGTGAGAAGCGAGAGACTGAATCTCGAAAATTTTGCTCCTTTTTTGAT
GTTTTGCGACCGTGTGAGAGGCTTTTCGAATTTTAGTCAACATTTTTAAA
CTTCTGTAGAAACTACGAGCATTGATGACCCCAAGAAACTTTCTTGATGA
CCCTGACCTCCTGGGGAgtctatttttttatatttcgtaattttgggacc
ctgtcagattgTTGGtttatggtttttgtacccctgtGATTCTGAGTGTC
TGGAATTTTCTCAATCCCCTTGACTTTAACATTATAAACCCACCTTTTTT
GCTTCTTAATTACATACAGGATATACATTGAATTTCGTGATCTTTCACGT
GAAAACACAGCATGGAACAACAAGTTATTCTCCCAATAAAAAAAGGACTG
GAGCCAACCTGTCAATCGTTGAATCACTAACACTAAAAAGCACGCATCAT
TATTTAGGTaactaatatttttttcaaaattattttttaaagaaaataat
aaccAAATATCTATTCTAAAAACTACATAGTCAACTTTTACGTCATTTAT
GCGTTTGTTTGTTTGGTATAAACTTATATAGGCGAAAGTTATATTAAAAT
AATTGTGATAACAAAAAAGGGAAAATCACCGAaaatattttaaccatatc
catTATTACCGAATCTATTTGGTCAATTGGTCTCAATTAAAACTACTTTA
AGTATGGGTTTCCCTCATGAAAGCATTAGCGTTAGAGCTAAAGCTAGAAA
TTTGTTCGGACCATTTATACCCACaccataattttttataagcagaAAGT
TTGCATCAAATCCTAAAAGTTTTAAGTTCTTCCTGATGacattttctctt
gaaaattCCAAATCTCCTCAATTTTTCTCATCCATTGATATATTACATGT
CAAGGTTGCGTACAACTTTTGATTTTAGACAATACGTATATCTTTTTGAG
GTTTTCAGTTCGTTTCACTGGGTAGTAATTATATGTAATATGTTTATGAT
GTATTCTGTCGTCTCgtcaatttgattttcaaaccaTTCAACGAAGTATT
AATTGTTTCAAACGTTTGCATTACTTCACTTTCATTTTGACTCGAACTAA
TCTCATATTTCTTTACCAAATGGTATAATGCGATTTTCAATTCCATCATT
GCGAAACGTTGCCCGACACAGTTTCGGGGTCCGGCAGAAAACGGCGTAAA
CAGAAAACTGTTTCTACCTTTCTTCCGTTCATCGAAGCCTTCAAACCTTT
CAGGATAAAACTTTTTCGGGTTTTCCCAATTCTCTGGATTATGATTTACA
GCTTTCAAGTCGACCATCAATGAGCATTTTGGGAAGACTTTGCCACCAAG
AACAGAGCCTTCTGGGATAGCCCTTTGAAAAGAATTAGCAATAACGTGGA
GCCGtaacgtctctttaatcaccCAATCAAGATACTtcagatttctcaaa
ttttcaaatgctTCGAACGAACCATCAAAGCGGTTGATTTCCTCAAAAAG
TTTCTCTTGGCGGTCTCGATTCCGCCCTAAACAATACAAAGCAAATGAAA
GGGTAGAGGCCGTCGTTTCATACCCTGCAAATATCATTGTCCCAACCTCA
TCTACAATCCCTTGCACGTCAATCTCACCTTTCTCAAAAGAATCTAACAA
CACATCAATAAAAATCTTCTGCTTCTCTACACTATTAACCTCTAACCCTT
CTTTGCGAAATTTTACTCTATCCTCGATGATGATTTGGACCAAATAACGT
AATGCATCTCGCTGACTTAATTGCAGTTTTCCTTCTGATGAGAAAGCgta
tattttttcattccataGCCAAGGTCTTTTAAAGCGATTCATAAAGTAAA
CAGAAGCTTTATCAAATATAACCTTGATATTTGGCCCATTGTCTTTCGTT
GTAGGATCTATTGTTAAAGGTACGTGTTTTCCCATAGCAGTGTCACAAAT
AACTGCCATCGTAAACTGCTTTGAAAAGTCAACAATGTCAAATTCACGCC
CATCTTCAGCGTACTTTTGAAGCAGGTTAACAAATTCCACCGAAATTTTC
TCAACAGCCGGCATGAAATTACATAAAAGGTCNAGGTTAACAAATTCAAC
AGAAATTTTCTCAACAGCCGGCATGAAATTACATAAAAGGTCGTAATGAA
AAGTTGGGACCACTAGTCTACGTCTTGTTTTCCATAAATTCCCACTACTA
CAGGCTAGTCCGTCACCTATGAGTGTTCTGACAAAGCGATATGAATTTGA
TTTTGTATTATACTTAGGGTTACTCATAAAATCTTCAATGACTTTGATGT
TTGATGTTATAACTAGTTTGTCCGTTAACAAGTATAACCCAAAAGTCCCG
TCATAATCAATTGCCCATTTGTCACAGAGATTTCGGATCTTCTTCAAATC
GATCAGATAAGGAATATGCCCAATAAGAGGCCAATGGCCGTCTACAAATG
GCACAGTGACTTTGTTGTTGCTACGGGTGAAAACATATTTCCACCAAAGA
ATCAATAAGATTGTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014103-exon-sc0000181-1491911889:45701..45852 | TCONS_00014103-exon-sc0000181-1491911889:45701..45852 | Clytia hemisphaerica | exon |
| TCONS_00014103-exon-sc0000181-1510915933:45701..45852 | TCONS_00014103-exon-sc0000181-1510915933:45701..45852 | Clytia hemisphaerica | exon |
| TCONS_00014103-exon-sc0000181-1575043694:45701..45852 | TCONS_00014103-exon-sc0000181-1575043694:45701..45852 | Clytia hemisphaerica | exon |
| TCONS_00014103-exon-sc0000181-1491911889:46265..46434 | TCONS_00014103-exon-sc0000181-1491911889:46265..46434 | Clytia hemisphaerica | exon |
| TCONS_00014103-exon-sc0000181-1510915933:46265..46434 | TCONS_00014103-exon-sc0000181-1510915933:46265..46434 | Clytia hemisphaerica | exon |
| TCONS_00014103-exon-sc0000181-1575043694:46265..46434 | TCONS_00014103-exon-sc0000181-1575043694:46265..46434 | Clytia hemisphaerica | exon |
| TCONS_00014103-exon-sc0000181-1491911889:47120..47257 | TCONS_00014103-exon-sc0000181-1491911889:47120..47257 | Clytia hemisphaerica | exon |
| TCONS_00014103-exon-sc0000181-1510915933:47120..47257 | TCONS_00014103-exon-sc0000181-1510915933:47120..47257 | Clytia hemisphaerica | exon |
| TCONS_00014103-exon-sc0000181-1575043694:47120..47257 | TCONS_00014103-exon-sc0000181-1575043694:47120..47257 | Clytia hemisphaerica | exon |
| TCONS_00014103-exon-sc0000181-1491911889:49178..49318 | TCONS_00014103-exon-sc0000181-1491911889:49178..49318 | Clytia hemisphaerica | exon |
| TCONS_00014103-exon-sc0000181-1510915933:49178..49318 | TCONS_00014103-exon-sc0000181-1510915933:49178..49318 | Clytia hemisphaerica | exon |
| TCONS_00014103-exon-sc0000181-1575043694:49178..49318 | TCONS_00014103-exon-sc0000181-1575043694:49178..49318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:45701..49318 + |
Blast
The following BLAST results are available for this feature:
|
