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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000221_pilon:310426..314256+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_020198 ID=XLOC_020198|Name=XLOC_020198|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3831bp|location=Sequence derived from alignment at sc0000221_pilon:310426..314256+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAGAAAACAACAAGAGTGGTAGGTGTTtactttttcttcctttaac
ttgttaacaaaatttacagaaattactaaggtctgtctcaaaagtatgtt
gACACTtgagttttttgacattttctcaacaCCCATTTATGCTAGGTTAG
AAAATTATGCACTgttggaaaaaatgaaagattttttctcctAAACTCtt
catacttttgagacagacaGACTTTAAATCTATGCTTACTcttgaacacc
cctgtctcacagccccagtggaactttttttctcacaGTGGGGAAAAAAT
TCCTATTAAAATCCCAATGTGAATAGAAATTCGTGTATTGTTCCAATGTT
AAAAAATCAAGTGAGAATGGTTTTGGACTGCAATTTTTAAACAGcagaat
taaagtttttttaagaaaacgtgattatgacgtcattatttatgacgtca
taattttaaaaagttgaatacctcgagaactaatactcaaagctttatga
aatttggaccaatgatagaactcatcaagaggaggagaatttttatttaa
caatatgaaaatttgtagatgtcagcattttatcgcaaaaattcgaattc
ttgcaatttctgctgacgtcattcaTTAACTTTtggaaatactttcaaaa
ctttttgaaacatctcaatgtactttatctaaatttcataaagttttgat
ttatatttctcgagatattcaaatttttgtatttatgacgtcatcaatca
ggttttcttaagatatctctaattatactgagaaaaaatttaagttacac
cgaatacggtattctacatccaaatacgcttccaaaaatgtatagtttgt
tatggtttagggactggaactggggcggaaaaaatAATGCAAATCTGGGA
CATATTAAGTTACCCGAACAAACTTTCCAGTGAAGCTGTGGtccgagaca
ggggtgtttttaatGGCTGATATATACTATAACAACAACTAattattgtg
aaaaaaaattatcccaTGGGTATTTGGTACTTTactgaccggtctgtaaa
atacacgataaccctttcctgaaataaaagaaCTTTAAGTGGAGCTTTTC
GACTTCgactaaattttgaccagtgataGACTTTTGACGGTGCACGAATA
TCTATTTTTGAAGTGTGCGAAAATTAAAGGCGCAAAACATTAAAGGGCTA
GAAAAAAGGACATACGTATTAAGGTATATAAGTCGTTAACAAATATATTA
AAATGGTGatttctctttcttttatacAGGTTTCAAACAATGCTTCTGTA
AGACGTTCGGCTGTGCTGGAAAGCTGGTTTCAACAAAAACGGTTCGACGC
CACATGGAGAAAGATTACGCCACTTTGAAATCGGATAGGCTTGATACTTT
GCGAAATCATGAATATCGACGAACCGTTCATTTCAACGAAGATTTGTACA
CAGAATCAGACGTTGCCAAAACAAAGCTTTACCCCGGCTCCGAGTTAACG
GTTTTGGAAGCGATCTttcttaaaataagaacatttgtGGGCCATACGTC
GTCAAAAGCTGAGCTGTCGGAAATATTTCGGAATGATCACCAACACGTCC
TTCCAAAGCCAAATAACATGCCGAGTTCCTACGAGGAAGCGTACAAATTG
ATCGAGCCGTTTTTGCTCCCTCTTGAAACGTACGATGTATGTGTTGATGA
TTGCATGTTGTTCCGTGGAGAGCATTCAGAGAAAGACCAATGTGTTTTGT
GTGGAAAAGATAGAAGATATCCTAATGGTAGACCAAAGcgaatttttaaa
tactttccGCTCGGGCCACAGATTGCAAGGTTATATGGCTcggaatcttt
aaaaaaatatctagAGGTTCCAGAACGACCAATTGAATTCGTAGCTGATA
TCCAGGATACAGCGGCCTGGAATGTTGAATGGTTTAGCGAAGATGGTGCG
TTTCGTGGACGCATCGGTAAGAAattgattttcactttttcatcatATTG
GTTTGGGGCTCTCAATAGCATCACCtgtagaaaaacaaaattactTATAC
TTGTTTTGTTTGAGGAATTTTAAAAGTGGTTGAAATTGGATGAAATTAAA
AAGGGAAAATCCTCTTGAccccttaagtggataaattttcgagcggatta
attttagcggttttcgcgaattttggccgttttcgttttcgttttttttc
attacctataacttttgaaggaattcttcaatctttataaagttgaaata
aaaaaaaaaatttaaaaattctaaaaatgaagaagaaaatgaagaagaaa
aaaattaagatcttgtagaaaagtgctataactatcattttcactgaagt
gaatccttgatcgtcgaacgtcatcactgtgagtgcacacttatcgtgaa
tagactttagaaaaCATGTTACAATCAAAACATATTACGAGTTCAACTCT
TCATTTCAATAATAAACTCTAGTAATCTCCTAAAAgtactttcttttaat
ttttttgaaagcttcTGAGTGCCTTTTTCTGCCtttgttccattaaaaaa
cacacatttcttttctagttacaatttatatagccgtgaaattaaataaa
gaaggccattttcgcgaaatttgatccatgtgaaaaatttaaagaccctt
gattcgtgaaatttaatccacgcgaaatctttaaattctcgtctcgcgaa
aattagtacacgcgaaaatttatccacttaagtaATTTGGgacatgtttt
aattttctatcCCTTAATCGCAATTGAAtaaccatttttggtggaacaAT
TTGTTTGGCGAATGATCTTTGGGTgaacttaaaactcaaaactaaTTTGT
GCCtaggacctaaacccaggctctGACGCTATAAAAACTGAAGCAGGGTG
ATAATAACGATATTAAGGAGTGAAATTTGAACCTGTTTTGTTAGGTGTTG
GTTTGTCATTTTGTGCTGATGGTGTGAACCCTCTTCGGCAAGAGAATAGA
CAGTACTCGATGTGTCCACTCCTCCTCCAGATCCTGAATTTTCCACCGTC
GTTCAGGAAATCTTTTGCTGGCATCCACATGTTGGGTATCGTTCCTGGGA
ATGGATCCAAAGAAGCATTCAATCTTGAGCCTTATCTTGACGTCTTTGTT
GAAGAGCTTCAGGAACTCATGCATTGCACcatatacctgaaaaaaaagaa
tgaagaggTCAAAGTCCGTCTTTGTCAGTACATTTTTGATACACCAGCTA
TGGCAAAAGTGATGCACATTTGTGGTCAAGGTAaatattagcctggatat
ccaagctcgaaattttagaaaaaacaatatTTACCTCAAcctacaaagtt
ctaaaattataaagcttggtctccctagagaatgaaagtgcaaacccatg
tttccaaaactttcctagccaacccagggtaGCAAACAGAActtaaaaca
aatgaacttgcctctttCCAATAGTTTTTAACGttggaaataaacaaaaa
caaagtctCCGTGATAAGTGTTAATTCAACAAGACATTGATCGGACAGAA
AATATATGTCAACAAAAGAAATGTGAAATAACCTTTCTAACGATCTTTAC
ACAGGCGCACTGAGGGCATGCATGTGGTGCAAAAATGAAGGGAAGAGAAT
ATCCGACTTAAACAAAGTGGTTTATCATGGTAGCCGCAAATTTCTCCCTG
AAGATCACGTATTGAGAGAATCGAAAGGCTATCCTGGCGGTAAACCAGAG
AACTCTGAACCAGGTGTTGCTTATTCCAAGGAAGAGCAGATTAGCCTACG
GCAGCAATGGGAGGACAAGCCTAACAAATCA Coding sequence (CDS) from alignment at sc0000221_pilon:310426..314256+ >XLOC_020198 ID=XLOC_020198|Name=XLOC_020198|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2544bp|location=Sequence derived from alignment at sc0000221_pilon:310426..314256+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAGAAAACAACAAGAGTGATGGCAGAAAACAACAAGAGTGGTTTCA
AACAATGCTTCTGTAAGACGTTCGGCTGTGCTGGAAAGCTGGTTTCAACA
AAAACGGTTCGACGCCACATGGAGAAAGATTACGCCACTTTGAAATCGGA
TAGGCTTGATACTTTGCGAAATCATGAATATCGACGAACCGTTCATTTCA
ACGAAGATTTGTACACAGAATCAGACGTTGCCAAAACAAAGCTTTACCCC
GGCTCCGAGTTAACGGTTTTGGAAGCGATCTttcttaaaataagaacatt
tgtGGGCCATACGTCGTCAAAAGCTGAGCTGTCGGAAATATTTCGGAATG
ATCACCAACACGTCCTTCCAAAGCCAAATAACATGCCGAGTTCCTACGAG
GAAGCGTACAAATTGATCGAGCCGTTTTTGCTCCCTCTTGAAACGTACGA
TGTATGTGTTGATGATTGCATGTTGTTCCGTGGAGAGCATTCAGAGAAAG
ACCAATGTGTTTTGTGTGGAAAAGATAGAAGATATCCTAATGGTAGACCA
AAGcgaatttttaaatactttccGCTCGGGCCACAGATTGCAAGGTTATA
TGGCTcggaatctttaaaaaaatatctagAGGTTCCAGAACGACCAATTG
AATTCGTAGCTGATATCCAGGATACAGCGGCCTGGAATGTTGAATGGTTT
AGCGAAGATGGTGCGTTTCGTGGACGCATCGGTTTCAAACAATGCTTCTG
TAAGACGTTCGGCTGTGCTGGAAAGCTGGTTTCAACAAAAACGGTTCGAC
GCCACATGGAGAAAGATTACGCCACTTTGAAATCGGATAGGCTTGATACT
TTGCGAAATCATGAATATCGACGAACCGTTCATTTCAACGAAGATTTGTA
CACAGAATCAGACGTTGCCAAAACAAAGCTTTACCCCGGCTCCGAGTTAA
CGGTTTTGGAAGCGATCTttcttaaaataagaacatttgtGGGCCATACG
TCGTCAAAAGCTGAGCTGTCGGAAATATTTCGGAATGATCACCAACACGT
CCTTCCAAAGCCAAATAACATGCCGAGTTCCTACGAGGAAGCGTACAAAT
TGATCGAGCCGTTTTTGCTCCCTCTTGAAACGTACGATGTATGTGTTGAT
GATTGCATGTTGTTCCGTGGAGAGCATTCAGAGAAAGACCAATGTGTTTT
GTGTGGAAAAGATAGAAGATATCCTAATGGTAGACCAAAGcgaattttta
aatactttccGCTCGGGCCACAGATTGCAAGGTTATATGGCTcggaatct
ttaaaaaaatatctagAGGTTCCAGAACGACCAATTGAATTCGTAGCTGA
TATCCAGGATACAGCGGCCTGGAATGTTGAATGGTTTAGCGAAGATGGTG
CGTTTCGTGGACGCATCGGTGTTGGTTTGTCATTTTGTGCTGATGGTGTG
AACCCTCTTCGGCAAGAGAATAGACAGTACTCGATGTGTCCACTCCTCCT
CCAGATCCTGAATTTTCCACCGTCGTTCAGGAAATCTTTTGCTGGCATCC
ACATGTTGGGTATCGTTCCTGGGAATGGATCCAAAGAAGCATTCAATCTT
GAGCCTTATCTTGACGTCTTTGTTGAAGAGCTTCAGGAACTCATGCATTG
CACcatatacctgaaaaaaaagaatgaagaggTCAAAGTCCGTCTTTGTC
AGTACATTTTTGATACACCAGCTATGGCAAAAGTGATGCACATTTGTGGT
CAAGGTGTTGGTTTGTCATTTTGTGCTGATGGTGTGAACCCTCTTCGGCA
AGAGAATAGACAGTACTCGATGTGTCCACTCCTCCTCCAGATCCTGAATT
TTCCACCGTCGTTCAGGAAATCTTTTGCTGGCATCCACATGTTGGGTATC
GTTCCTGGGAATGGATCCAAAGAAGCATTCAATCTTGAGCCTTATCTTGA
CGTCTTTGTTGAAGAGCTTCAGGAACTCATGCATTGCACcatatacctga
aaaaaaagaatgaagaggTCAAAGTCCGTCTTTGTCAGTACATTTTTGAT
ACACCAGCTATGGCAAAAGTGATGCACATTTGTGGTCAAGGCGCACTGAG
GGCATGCATGTGGTGCAAAAATGAAGGGAAGAGAATATCCGACTTAAACA
AAGTGGTTTATCATGGTAGCCGCAAATTTCTCCCTGAAGATCACGTATTG
AGAGAATCGAAAGGCTATCCTGGCGGTAAACCAGAGAACTCTGAACCAGG
TGTTGCTTATTCCAAGGAAGAGCAGATTAGCCTACGGCAGCAATGGGAGG
ACAAGCCTAACAAATCAGCGCACTGAGGGCATGCATGTGGTGCAAAAATG
AAGGGAAGAGAATATCCGACTTAAACAAAGTGGTTTATCATGGTAGCCGC
AAATTTCTCCCTGAAGATCACGTATTGAGAGAATCGAAAGGCTATCCTGG
CGGTAAACCAGAGAACTCTGAACCAGGTGTTGCTTATTCCAAGGAAGAGC
AGATTAGCCTACGGCAGCAATGGGAGGACAAGCCTAACAAATCA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000221_pilon | genome | sc0000221_pilon:310426..314256 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1048-1272:3607 |
| Aaloc | 712-1044:2947 |
| Aaloc | 25-708:1282 |
| Aaloc | 1-21:1 |
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