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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013858 ID=TCONS_00013858|Name=TCONS_00013858|organism=Clytia hemisphaerica|type=transcript|length=1042bp
AAAACATTGTTGAGAGTTTCGCACACAATTTTGAACTACTACTAAAGTAA
AGTGAAAGGAAAAAAGACTTTTGGCAGACTTTATAACTAAAACAGTTGAC
TAAATCTGAGGTTATAAGAAAAGGATGGAATTTTTCAAGGATTCAATTTC
TATCTGTCTGATTGTGATCTTGTTGGTTACAATTTCATTTTCgaagAGTA
TTATTCAAGAGGATGATGAGCTGGTCAAAAGAAACGATATTATCAACAGt
catgaagatgaagaagtatCAAAGACATTGGATCGGCGATCAATATGCGA
TTTATCGATCTCAGCCTGTATCCCAGGTGTCGTGTCATCGTGCGTAACGA
ACGATCAATGTCGTGTTTGTTGTGGGAGTGTTGAATATGTCTGTCTCTTG
GGAATCTGTTTTGAAGACCGCGGTGTGATATCTATCGCGTCTGCTGGTAG
TAAACTTATTGGATAGTGGATCTCAACACCTAATATTATACAAAGCGTTC
AAAAAGAATTAGGGAGTTgttttttaaatcatgtttcCATTACCATGCGA
ATAATGTATAGattaaacaaagaaatattatttGATTCCTATTGTTATAA
CTCCAGTGACAGAAGATATATGAACCTATTGCCTACATAAAATCGGTTCC
CTTTTTTTCCGCACTACACTGTATACTATACCGTGTGTTTAGTATCTATA
TACCTTAAgcggataaattttggcggagattaaatttggcaaatttgacG
AATTTGGTCaaaaatcgccaaattaaatccctgcaCAAATTTAacgaatt
ttttaaagaaaacttaaaggaaaaaattttggtgggaatttaatttggag
gATACTAGCtgtataaattaaatttgacgggaatctaatttggcggttgc
aggatattttgggccaaaagcgttattaaataagcaaaaaaacctgtttt
aaggcttgaaatagtacgaatttggggaatgcgtgaaatgaattaaattt
ggtgggaatttaatttggcggatggaggaaaaaattaatttt Run BLAST on NCBI transcript from alignment at sc0000174:585203..588937+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013858 ID=TCONS_00013858|Name=TCONS_00013858|organism=Clytia hemisphaerica|type=transcript|length=3735bp|location=Sequence derived from alignment at sc0000174:585203..588937+ (Clytia hemisphaerica)
AAAACATTGTTGAGAGTTTCGCACACAATTTTGAACTACTACTAAAGTAA
AGTGAAAGGAAAAAAGACTTTTGGCAGACTTTATAACTAAAACAGTTGAC
TAAATCTGAGGTTATAAGAAAAGGATGGAATTTTTCAAGGATTCAATTTC
TATCTGTCTGATTGTGATCTTGTTGGTTACAATTTCATTTTCgaaggtaa
attttttttgaaatttttcttttttttccattGCCATGTTTATCGTAAAT
CATAGATCCTTTaaaacaccccttctcacagacccggtaggattttctTA
GCCAGTTGAGGTAAAAAAAAcgaaccaaaactcgatgggattgatattcc
catattttagCTTCAGATTTCAATTCCATAGTTTTCAAGTCAATAAATTC
AGGGAAAAGTCGCATAATATTTTACAATGAGGATTGGTTTGATGATTATT
actatccatatagcggtcattaagtaagccattaaaggttcGAACgacgg
gcggtattgaaaggttttgtgactcaaattgtcatacccacgctgaggaa
actaaagcgccaggcctcagagggctgaaatatcattaaccgcccgggta
tagggcaataacgtcatttgcaGCCTACTTGGAATTGGATTGAAGTCGTT
GTATTAAAGCGAAGAGACTAAAAtaaagtcagaaaaaaaacactttttgg
tcatttgcggcccgctcgcaaggtgctaaaaattttttgaagagatTGCA
TTGAAGCGGAAAGACTTggttgacgctagaaaaaaaacgttgtttgaatg
tccgatatgaataataatagtaatagcgtcaATTTTTCGTTCGTagttgt
cattaattctgcccttgcagtttgattattagccctctagtgccaaATGA
CACCATCGGGCGAATAATCAAACTACgggggcagaaaataacaacaacga
cctcacactgaacgctattgttatattatcaTTCTGATTTAGAGTATTAT
TCAAGAGGATGAAGAGCTGGTGAAAAGGAAAGATATTATCAACAATCACG
AAGATGAAGAAGTATCAAACACATTGGATCGGCGATCATCTCGTTGCGAT
TTATCGATCTCAGCCTGTATCCCAGGTGTCGTGTCATCGTGCAGAACAAA
CGATCAATGCCGTGCGTGTTGTGGTAGTGTTGAATATATGTGTCTCTACG
GAATGTGTTGTAGAGACTCTAACGTGATTAATTTTAGAAAGCTTTAATTT
AATAAAAGAAAAGATCATCACGTTATAATAATTTAAACTTCGACAAAATC
TTAGATTCGATTCCTTTTTTagcaatcaaaaaatttcagtttttggATTT
GGACACGGTACCCCCCCCCCATACCatcactgaaaaaaatattgcagaCT
TTTAAAGATCTATAAAAACTCTAAacagactttcaaaactatttttaacG
TACGCagtatttattttgataaagaGTCTGGTTGACACTTGTACAGTTTC
TGCAAAGTCTTCAGTTTTGATGCTATTGTCCGCTGTCGTCCGCttagagg
gtcagtaaacgcgggaaatacatatgcgcagagtcagggcgtcagggcgg
tttacgggaacaAATAGTGGCTGTAGAGGTTGGAACAAACGCTGTAAACA
TCTCCCACCACAGCTTACTCCGCCCCGGGTTAATCACcgatttcaaattt
atcccgcttCTCCTaaactatttctttttttagtgatcttgtgtagacga
taggatcgtctagttTTGTATATGACCTAAGAATTCAAAGATGGTATTGG
ATTATAATGATTTTTTCACCTTGTACCGATTTCTTTCTATTTAGGCTAAT
CTTAAGTTTATGGTTGCTCAATTTCAATAGATTCAAAAGCATCTTGGTGG
TTTTCAAAAACTATCAGGGGTGCTGATATGGTGGTGTTCTTGTACTCTGA
GAAGTAATTTCTCGAAATAATTTCTTCGAACAGTTGGTGACTTGTTAAAA
AAGGGATGGAATTCCTTCCTTCTTTACTCACATTCAAAGAAATGTATTAT
CAAGATATTAGCCGTCTTAAAGGTTGACGAAATCGAGCCCAATTACGTCT
TCAAATATGTTTCTTCAATTTTGgaagatttttcttaaaaaataaaacat
atttttgTGAATCATAAACTCACTTCAGAGTAACTGATTAAGCAAAAGTA
GAACAAGAGAGGTCTTTAGCAGATTTCATATTTAAAATATCAAGCAAAAC
AGTTGACTAAATCTGAGGTTATAAGTAGAAAATGGAATTTTTCAAGGATT
CAATTTCTATCTGTCTGATCGTGATGTGTTTAGTTACAATTTCATTTTCG
AaggtaatttttctttcttttttctaagtttCATTTAGAGCTTTTCCAGC
CTTGATCAAGGTTTCGGGTCTTTTTAAAGATAATATACAAaaacgagggg
taaatcactaaaaattaggtgtacgagattttcatttctttttgattttt
gatttctttttgatttctttttgatttctttttgatttttgatttctttt
tgatttctttttgatttttgatttctttttgatttcttttttatttttga
tttctttttgatttctttttgatttttcaaaaaggtgtacgtgatttttt
tcagtgatttacccctcgtacAAAAAGACATTATTGCCAAGTTTGATCAC
CCATAGATGTTGCATTTAATAAAAGATACATTCTTAAATAAGTTCATTTA
TTTAAAGCGGGGGTCTGTTTAAAGCCCTGTTTTAAGGGTAGCAAAAAATG
GTCATAGCCAAAGTGAACGAACTTTTAAATTTATAATATGAAGACTTAAA
GATGCtactttttttacaatttgCTATACAATTTTAAAGAGTATTATTCA
AGAGGATGATGAGCTGGTCAAAAGAAACGATATTATCAACAGtcatgaag
atgaagaagtatCAAAGACATTGGATCGGCGATCAATATGCGATTTATCG
ATCTCAGCCTGTATCCCAGGTGTCGTGTCATCGTGCGTAACGAACGATCA
ATGTCGTGTTTGTTGTGGGAGTGTTGAATATGTCTGTCTCTTGGGAATCT
GTTTTGAAGACCGCGGTGTGATATCTATCGCGTCTGCTGGTAGTAAACTT
ATTGGATAGTGGATCTCAACACCTAATATTATACAAAGCGTTCAAAAAGA
ATTAGGGAGTTgttttttaaatcatgtttcCATTACCATGCGAATAATGT
ATAGattaaacaaagaaatattatttGATTCCTATTGTTATAACTCCAGT
GACAGAAGATATATGAACCTATTGCCTACATAAAATCGGTTCCCTTTTTT
TCCGCACTACACTGTATACTATACCGTGTGTTTAGTATCTATATACCTTA
AgcggataaattttggcggagattaaatttggcaaatttgacGAATTTGG
TCaaaaatcgccaaattaaatccctgcaCAAATTTAacgaattttttaaa
gaaaacttaaaggaaaaaattttggtgggaatttaatttggaggATACTA
GCtgtataaattaaatttgacgggaatctaatttggcggttgcaggatat
tttgggccaaaagcgttattaaataagcaaaaaaacctgttttaaggctt
gaaatagtacgaatttggggaatgcgtgaaatgaattaaatttggtggga
atttaatttggcggatggaggaaaaaattaatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013858-exon-sc0000174-1491911889:585203..585398 | TCONS_00013858-exon-sc0000174-1491911889:585203..585398 | Clytia hemisphaerica | exon |
| TCONS_00013858-exon-sc0000174-1510915933:585203..585398 | TCONS_00013858-exon-sc0000174-1510915933:585203..585398 | Clytia hemisphaerica | exon |
| TCONS_00013858-exon-sc0000174-1575043694:585203..585398 | TCONS_00013858-exon-sc0000174-1575043694:585203..585398 | Clytia hemisphaerica | exon |
| TCONS_00013858-exon-sc0000174-1491911889:588092..588937 | TCONS_00013858-exon-sc0000174-1491911889:588092..588937 | Clytia hemisphaerica | exon |
| TCONS_00013858-exon-sc0000174-1510915933:588092..588937 | TCONS_00013858-exon-sc0000174-1510915933:588092..588937 | Clytia hemisphaerica | exon |
| TCONS_00013858-exon-sc0000174-1575043694:588092..588937 | TCONS_00013858-exon-sc0000174-1575043694:588092..588937 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:585203..588937 + |
Blast
The following BLAST results are available for this feature:
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