TCONS_00013866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013866
Unique NameTCONS_00013866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013866 ID=TCONS_00013866|Name=TCONS_00013866|organism=Clytia hemisphaerica|type=transcript|length=1826bp
TGAAATTTCATCTATCTGCACTGACCTTAAAATACGTATTTCGGAACCAC
ATATATTTAGTATAATCTGATTGGCTCTTGAGAGAATAATAAAGACAAGT
TAAATACAAAAATCttaacattcaattttcaaacagACTTTTTAGAGACG
AAAGGATTGACAAATATTGCAGTaaaatattatctgaatataaaaAATGC
ACAAGTTTTTGTTGGCAGTTTTGGTAGTTTTGGCATGTGTTGCTTATAGC
GAATGTATGAAAGAAGattGTCCAAAACAGCAATGCCGTATGTATTGCAA
GAATGGgtttaaaattgatgaaaatggaTGTGAGATTTGTGACTGCAATA
AGTGCCCACAAGTAATGTGCAGCATGTATTGCAAAAATGGATTTGAACTT
GGAAAAGATGGATGCCCAATCTGCTCATGTAATAAATGTCCACTTTACAT
GTGTAGAATGTTTTGCAAATATGGTTTCGTAAAGGACAAAAATGGCTGCT
CTCAGTGTAAATGCAATAAATGTCCGAATGTAATGTGTATGATGCACTGT
CCGAAAGGATATCAAAAGAACGCTTCTGGATGCAACATCTGCAAGTGTAt
tgaATAAGACGAGGCCTCGCACTTCGATTGAGCCACGGCACCACAAAGAT
GTAACACGTTTCGAACAAAGTTTCGAAGAATAGCAATATATCCTTaatat
attttaaagaaaaattgtttttaaaatacacaagttttttgtcaattttc
acaAAGCTTTTTGTAATTGTTGGTTAGTATTCAGTCAGAAATCTCACAAA
CCAACACTTCACGTTCAACATCCGCCATTATAATCTGACCATTAACATAA
ACTTGAAAAGTTTGTTTTCGAATCTCTTTATGACAACTGACTGTTCCCGA
TGTCGTTCTTTGCATACCCATTGATGGATAGGAAAGACAGATTTCCTCAT
TACCGGAGCCTAGGTTCCCCTCTGCTTTAGGTGGTTGAGCAACGTTCCCT
TCTCCTTGAGACAATCCAAGAAAGTTTCCttcaatttgattttcattCAG
TCGAAAAAACTCGTTGACTCCCTCATGGTGTACTCGTATATTTTCGGAAC
ATTGCTTGAAGCAATCAGAATCAACCTCATAttttttaccactttttgcC
TCGTTCGATGTCACCGAAGAGCAAGCAATGATACAGTGGTTTATACGAGC
AGCTTTGTTAAAACTGACCGGTACACAACCTTGTTGGGTTAGTGTCGCCA
TAAGAGTGCTGATCCTCTCGACAATGATAGATTTGAAAAAATCGTTACAT
TCTCTTAGACAGCTTTCTTGGAAACAACACAAATCTACGTTTGCTCCACC
ACGACATTGTTGGCGACACTGGATACACGTGTCAAAGATGTGATGGTTGC
GTTCTTTGCGGATTGAATCCCGGATTGCTGAGATGAAGTCTTCTTTGCAG
TGAAGTTGACATTCTTCCTGCAGACAGCATTGGAGATTCTCAACACCAGT
AGACTTTTCGCACTCGTGATAACATTGTAGACATTCTTTAATTTGGTTTT
GTCTACTTGCAACGCAGATTGATAGCACGGcaaattggaaaaaaagaaTG
ACTGCAGCTGACTTGTATCTAAACATGGTTGGGGCCTCAATAGTGCTCTT
TGAGATATGAAGCTTTATATTTAAGTTTCAAAATCTTTACCTGATATGAT
TTAAacaattcacaagctttttagAGATTAGCAAATTGAAACGACTtgat
aatatttgaaaatcgaTGGCAATCAGCTTTTGATCAAAAGTTAAATTATT
GAGCTAAAAATATTCCCAGCAGCGTA
Run BLAST on NCBI

transcript from alignment at sc0000174:170144..176397-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013866 ID=TCONS_00013866|Name=TCONS_00013866|organism=Clytia hemisphaerica|type=transcript|length=6254bp|location=Sequence derived from alignment at sc0000174:170144..176397- (Clytia hemisphaerica)
TGAAATTTCATCTATCTGCACTGACCTTAAAATACGTATTTCGGAACCAC
ATATATTTAGTATAATCTGATTGGCTCTTGAGAGAATAATAAAGACAAGT
TAAATACAAAAATCTTAACATTCAATTTTCAAACAGACTTTTTAGAGACG
AAAGGATTGACAAATATTGCAGTAAAATATTATCTGAATATAAAAAATGC
ACAAGTTTTTGTTGGCAGTTTTGGTAAGTCCACTTTGACATTTTCTGACC
TCTGAAAAATGCTTCATCAATCTTAACTGTTAATTATTCTATATTTTAAC
ATCAGAAATCTTTTTGTTTTTGTGTACTCTCAGGTGCCTTATAAGCGCCC
TCCCGCTGTTTATTTTTCGATTTTGTTACCAATCCCCCGGACCTTATTCG
AATCCCCCTTGTTTAATGAATTTTGAAAGTATATTCAGTTGTCAAAATAT
CTCTAAATAGCAAGGTTTTCTGTCAATAAATACCTTATTTTGGAGGTATT
TACAGATACAATTTCCAAACCCCTCCCAGTATTTAGGTTCCCCAATTCAT
TAAAATTTGAAGATTTTTCTTATAATAACCCCGGGGGATACTTAGGCAAA
ATGGGTGTAGGGTATGAGAGAGCCATAAGGGTCCTTCAGCAATTGATTCT
TTGAATGGTTCCCAAAATTACGAAATATAAAAAATCTTCCCGTCGGGGAA
ACGTCCGGTAATCCTCTTAAAATCTGCTAATTTTGAACTAAGAATTGTTG
AAATAGTCAGTGAGAGGGTCGCAAAACGTCGAAATTCAAAGGGTCGATTT
TCGAACTTTGGCTCGGACATGCTCATCACCTCGCAAACCTAGTATTCCCC
AGACAACAACCATTTTTTTGCTTAAATTCAACCATTCAAGACTCAAGGAC
TCAAGGTTGTTCTTAATAATTGTTACTTTTGACATTTTTTACCTTCGTTG
TTGTCATAAAAACATAAATTTTTTAAAACGTTCAGGTGGCGTTTTCAAAT
AAATGAAACATTCTATTATATCATTTCTTCAGGTAGTTTTGGCATGTGTT
GCTTATAGCGAATGTATGAAAGAAGGTATGTATTTTACCTAGTGTGGGGA
GGTATCTAGGCAAAATGAGTGCTGGCTGAGTATGTGTAAGCCATAAAGCT
CCCTTATTTACACACTCAAAAGTCCCTGGAAGAAGTACAAAAACCAATAA
AAAGCAAATTGAATCTCTGAAAGGGTTCCAAAATTAAGAAAATAAAAAAA
ATCGACTCCCTCAAAAAGTCATAAATTCTTGAAATTTTGACTAAAATTTT
GAAAAATTAGCCAAAATGTGGGGAAATAATCTCACTAAGTTTGGCAAAAA
CGTCAAAGAATGGTCTCTTTAAGTGTCGATTTTCGAATTGTGGGTTGGAC
ATCAAAAAGCGAGCAAAAAAACTAATTTCTCAAACGCAAGTTTAAGTAAG
AAACAATGGAAAGAAACAAAAGGCCACTTTGATGTTGTTCTTACAGAGCA
AAACAAAAAGTCAACTCTATCTTTTTTTTTAGATTGTCCAAAACAGCAAT
GCCGTATGTATTGCAAGAATGGGTTTAAAATTGATGAAAATGGATGTGAG
ATTTGTGACTGCAATAGTAAGAAAACATTTTATTTTATCTTTAACTGTTT
AAACCACGTTAAAGTTTACACCACGCCCATAAGGGATAAGGGGAATTTCA
AGGGGAATACCTTTCCACATTTTCACCAAGTACATGTTTTTTTATAAGCA
TTGCACTTAAAGCATATCTAGGCTCAGGTATGGGGAAATATTAAGCATAT
GGCAAGCATTACTTGAGCCGAAAAATGTTTTTTTCCAGATTTTGGCTTTT
TTTGGCTGGAATTTTACGGATTTTCAGCCTTATTAAGCTTTCGACCTAAG
AATCTCTGAGCCTGTTTTCGGATTTTTGTATGCTTATAAAAAAAACATGT
ACATAAAGACCATATAAAAAAAGGCCAAAAATAATAAAACCCCGCAGCCC
CCTATATATCCGCACATTTTTATATGATTCATCAAGTCTAGTGTCAGAAT
ACATAAAAACCGCAAGAGAGCATTGACAAGTGAATGAAAAAAAAGTGTTA
AAAATCTAAATAAGTACAGTGTGTCCGGAAAGAGTGTCAAATATTTCATA
CAAGGTAAATCCTTTCAAAACTTATTACTTCACAGGGGTTTAGTATCAAA
TTGTTTTTGTTCGCCCAATAAATCTTTAAAAACTTACCCACCTCTTTAAT
TGTTCCCTGTTAAATGACCTATCCCACATCGGGATATATTTGGCCCGCTA
TGTATGGCAAGGCTGCACTCGAGGAAAAATTCGGAAATACCAAGTTCCGC
ACTGGAAGAACGCACCAGATAAATTTTGGTCCGGGAAAAGGTGCACCTAT
ACCTCGGAAATTGGCCCAAAAAGGCAAAAAATTGCAGTTGAGGAGAAAAT
AGTGGAACCCTTGAAAACCGTGTTTTTCAGCTGTTTTGTCCAGTTTTGTG
CTTTTTGAAGCTCAATATCTCGAGTTAGGTACTGAAATCACCTATACTTG
CAATATATCTCTAATCCTAATTTTTTGAGAGCTTTCCAAAAATATACAAC
AAGTCTCCGTTTTCTCAAGCCAAAATTTTCATTAATTTTTAACCCTATGA
TTTTTGCCTGAGACCGTCATATTTGTCCGAAAATCACACCAAAGTGTCCG
AAAAAAAAATTGGAAACATCATAATTTATTCGATTTCTCTAAGGTTGAAG
TTTCCAAAAATGTATAACAAGTGCTTCTAACAAAACAATCGAGCGATTTT
ACAAAATGCCCTTTACTATAAAAAACCGTCTGCACTTGTACCTGAAAACC
TCACTTTTTCCGAGTTGTGCACTCGACTTTTTCCGAGTTGTGCACTCGAG
ATCTCGAGCCATACTCTGCAAACTGAGAATTGAAAATTGAACATATTTAA
TTCATAGAGTGCCCACAAGTAATGTGCAGCATGTATTGCAAAAATGGATT
TGAACTTGGAAAAGATGGATGCCCAATCTGCTCATGTAATAGTAAGTTTA
TCCATAGAGGTTATTTCATTATTTTTACTCAGCTAACAAATAAAATAATA
ATACCAGCGAATCTTAAACTCTTTAGTATCTTAATGTGGCCAAATCCGTC
GATCGCAGGGTCAAAGTAAGACCCCCTGAACCCAGGAAGAAGTTACAAAT
ATCTCTTCTTTTGGGTGAATGTATACCTAGAACAGTTTTATCACAAACGC
CACCATGGCACCGAGACGAAGCATCGAGACAGGGATGTCTTAAAGTAAAA
TAAACTAAAATTAACTGGTTGTTCCAAACCTTGAAACCCTGCTGGTTGTT
ATTCTTCTAAAATTGTTGGCGTCTCAATTTTCTAGAATGTCCACTTTACA
TGTGTAGAATGTTTTGCAAATATGGTTTCGTAAAGGACAAAAATGGCTGC
TCTCAGTGTAAATGCAATAGTGAGTTCTTGTTTATTTTTCCTTTATTTCA
AAACTGACTGTGTATTTTTTTTTAAACAGGTTTTATTGCGTTTCTGATCA
ATTCTATGGTTTCCTATGTTTGGTTAAGTTACATGATATCCGCCATCATT
GAAGCAAACGTTCGAATCTGTTGATGCGATTCCTTGCTCAAATCGAATGT
TTGCTTCCACAATGGCCTCCCGCCTCCCGCCTTACGTAGCTTGACCAAAC
CGATTTTTTCACGACAATCAAAGTGCCAAGGATTGAATTTGCATTGAAGA
TAAATATTTAGAAAATCTTTTTTTTTTTGTTTCGTTTATCAGAATGTCCG
AATGTAATGTGTATGATGCACTGTCCGAAAGGATATCAAAAGAACGCTTC
TGGATGCAACATCTGCAAGTGTAGTAAGTATGATATGCAGTTGACGCTCT
CTAATGCGACGTTCTAATATTCGATATGCTCCCTTATTCGATGAGATTTA
AAGTCGCCGTTAACAAGAAACTCTAATAAATGACGCTCTCTTATTCGATA
AGATCCCTTATTCGATGAAAATCCGATTCCCCTTGAAGATCGAATCAGAT
AGCATCAACGGTATATCCTTCAGTGTGAAACCTTCGTACAAAAGGATCCC
GCTTATATAAGGATTGTTTTACTACAGCCAACCAAACATTTCAACAAAAA
TAAATCTGATTGAAAAAATACAGTCGACTCTCTCTATAATTCGATCTTTA
ATTTACTAAAAGTTTTCTTCAGACTTTAGAAAGATTCGAATTACGGAGAG
CATTTTATACAATTTTCAGATGAGGGGGTCAATGTTTCAGGTTTAATTAC
AAAAAGATTCGAATTACAGAAAGATTCAAATAGCAGAGGTTGGATTTAGA
GAGGGTTAAATGTATCAATCAGGACTCAGAAACTTGCTAGGAAAGCTTCG
ATTGTCGGTCAACCGTTAAAACTTATATTATATTCAAACAAGGATATGCT
GTCTTTTTGAGAATTATGTAATAATATACGAGATATTATACAATATAATC
GTCAGCCGTGCAAAATTACTCGAATCTGATTGGTTTAGAGGAGTGCAATT
AATCGTTAATTGCACTATTACCACTTTTTGCACTCTTCGGCGGGGGGACA
CTTTTGTCCCCTTATTCTTTTCTCTCCCAAGTCCTGTGTCAGAGACTTTT
TTTTACTATATAATAAAAAACAAAGACATTTTTTTCTTCAATATAAAAAA
GAACAAAGAAATTTTACGTTACAATAGCTTCTTTTGATTGAAAAGAAAGA
ATTCGAATGTCAAAAGTTTTCCCTTTTTCTGAAAAAACTATGATTTACTA
ATGATTATTTACTGACGATTACCTCGGAATCGTATGTTTTCTCGTGCAAT
TAACGATTAATCACTCGTAACAAAGGAGAAAATACCGTACTTTGCACTCG
TCCTTCGGACTCGTGCAAATTACTATTTTCTCCTTTGTTACTCGTGATTA
ATCGTTAATTGCACTCCAAACCATACGATTACTAGTACTAATATGATATG
ATGTGAATGGTTTTTTTTTCATTTTAGTTGAATAAGACGAGGCCTCGCAC
TTCGATTGAGCCACGGCACCACAAAGATGTAACACGTTTCGAACAAAGTT
TCGAAGAATAGCAATATATCCTTAATATATTTTAAAGAAAAATTGTTTTT
AAAATACACAAGTTTTTTGTCAATTTTCACAAAGCTTTTTGTAATTGTTG
GTTAGTATTCAGTCAGAAATCTCACAAACCAACACTTCACGTTCAACATC
CGCCATTATAATCTGACCATTAACATAAACTTGAAAAGTTTGTTTTCGAA
TCTCTTTATGACAACTGACTGTTCCCGATGTCGTTCTTTGCATACCCATT
GATGGATAGGAAAGACAGATTTCCTCATTACCGGAGCCTAGGTTCCCCTC
TGCTTTAGGTGGTTGAGCAACGTTCCCTTCTCCTTGAGACAATCCAAGAA
AGTTTCCTTCAATTTGATTTTCATTCAGTCGAAAAAACTCGTTGACTCCC
TCATGGTGTACTCGTATATTTTCGGAACATTGCTTGAAGCAATCAGAATC
AACCTCATATTTTTTACCACTTTTTGCCTCGTTCGATGTCACCGAAGAGC
AAGCAATGATACAGTGGTTTATACGAGCAGCTTTGTTAAAACTGACCGGT
ACACAACCTTGTTGGGTTAGTGTCGCCATAAGAGTGCTGATCCTCTCGAC
AATGATAGATTTGAAAAAATCGTTACATTCTCTTAGACAGCTTTCTTGGA
AACAACACAAATCTACGTTTGCTCCACCACGACATTGTTGGCGACACTGG
ATACACGTGTCAAAGATGTGATGGTTGCGTTCTTTGCGGATTGAATCCCG
GATTGCTGAGATGAAGTCTTCTTTGCAGTGAAGTTGACATTCTTCCTGCA
GACAGCATTGGAGATTCTCAACACCAGTAGACTTTTCGCACTCGTGATAA
CATTGTAGACATTCTTTAATTTGGTTTTGTCTACTTGCAACGCAGATTGA
TAGCACGGCAAATTGGAAAAAAAGAATGACTGCAGCTGACTTGTATCTAA
ACATGGTTGGGGCCTCAATAGTGCTCTTTGAGATATGAAGCTTTATATTT
AAGTTTCAAAATCTTTACCTGATATGATTTAAACAATTCACAAGCTTTTT
AGAGATTAGCAAATTGAAACGACTTGATAATATTTGAAAATCGATGGCAA
TCAGCTTTTGATCAAAAGTTAAATTATTGAGCTAAAAATATTCCCAGCAG
CGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007745XLOC_007745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013866-exon-sc0000174-1575043694:176175..176397TCONS_00013866-exon-sc0000174-1575043694:176175..176397Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1575043694:175323..175365TCONS_00013866-exon-sc0000174-1575043694:175323..175365Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1575043694:174782..174865TCONS_00013866-exon-sc0000174-1575043694:174782..174865Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1575043694:173357..173440TCONS_00013866-exon-sc0000174-1575043694:173357..173440Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1575043694:172929..173012TCONS_00013866-exon-sc0000174-1575043694:172929..173012Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1575043694:172525..172605TCONS_00013866-exon-sc0000174-1575043694:172525..172605Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1575043694:170144..171370TCONS_00013866-exon-sc0000174-1575043694:170144..171370Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1510915933:176175..176397TCONS_00013866-exon-sc0000174-1510915933:176175..176397Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1510915933:175323..175365TCONS_00013866-exon-sc0000174-1510915933:175323..175365Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1510915933:174782..174865TCONS_00013866-exon-sc0000174-1510915933:174782..174865Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1510915933:173357..173440TCONS_00013866-exon-sc0000174-1510915933:173357..173440Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1510915933:172929..173012TCONS_00013866-exon-sc0000174-1510915933:172929..173012Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1510915933:172525..172605TCONS_00013866-exon-sc0000174-1510915933:172525..172605Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1510915933:170144..171370TCONS_00013866-exon-sc0000174-1510915933:170144..171370Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1491911889:176175..176397TCONS_00013866-exon-sc0000174-1491911889:176175..176397Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1491911889:175323..175365TCONS_00013866-exon-sc0000174-1491911889:175323..175365Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1491911889:174782..174865TCONS_00013866-exon-sc0000174-1491911889:174782..174865Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1491911889:173357..173440TCONS_00013866-exon-sc0000174-1491911889:173357..173440Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1491911889:172929..173012TCONS_00013866-exon-sc0000174-1491911889:172929..173012Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1491911889:172525..172605TCONS_00013866-exon-sc0000174-1491911889:172525..172605Clytia hemisphaericaexon
TCONS_00013866-exon-sc0000174-1491911889:170144..171370TCONS_00013866-exon-sc0000174-1491911889:170144..171370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:170144..176397 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0213954	0	0	0	0.0233808	4.54148	5.36081	13.4968	9.77889	18.1386	14.13	0.466941	0.545539	4.94603	13.5303	23.7342	18.4688	0.0233232	0.170842	315.611	311.003	7.04382	5.9007	4.56996	8.89299	1.20339	0.995325	23.8895	30.4432
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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