MSTRG.14163.1.p1 (mRNA) -

Overview
NameMSTRG.14163.1.p1
Unique NameMSTRG.14163.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000117_pilon:131663..135448+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14163.1.p1 ID=MSTRG.14163.1.p1|Name=MSTRG.14163.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3786bp|location=Sequence derived from alignment at sc0000117_pilon:131663..135448+ (Clytia hemisphaerica_ch_hm2_pilon)
AGACTTTATCTTTAATAAAAAATGGGAAATTGGATATCAGTGGAAAGAGG
TAAAGAGAATGTTGGAGCAGTCAAGAATTATTGCGAATCTGTTGTTTTTG
TCAGGTTTTATGGACAGACGAACAGCATGAAGGTAACAAAGCATTCATTA
TGGTTGAATTTGCCATTTTGCCGAAATCAGCCTTGGGTTGATGTATTTCA
GGGTTGGAAAATCCTATTGACTTTTGAACTGTTAGGTATTAATAGCAAAC
CAGCGGTTATGCCACCTTTTTTGTTAAATACGGGACTGGACCCAGGTTTC
TTTCCAGATCCACAACCATACTTTCTTCTTTGTTTATAATTAGGGTCCTC
AAGACCATGAAGAAGTGGACGGCCCTGATCATCACCCCAAAACACAACTC
GGACACATTCTCAATAAACTCGATCAAGAAATTCGAAAAGCATCTGCTGC
ACATCAACTCGAAATAACAGATGAATTTAAAGAGCTTTTGCGGGATGTTG
CTAAATCCAGGGTGTGCACAAAAGAatgtgaaaatgaagaagaatgtCAT
AAAAGGTTATTGGGGGATGCAGAGAAATTTGTTGCAATCTATAAGAAACG
TGGATGTAAGATCTTTAAATACTAAAATCGCCGAGATGAACCTTGTTTTG
ACCTTCCACGTTTGTTACCATGTTATAAATGGTTGAGATGGTGTGCAAAC
TTTCTAAACTCTTTTGCTGAAAGGTTCCCGAAAAGGGATTGGGTTCGAAT
GatgaatgacgtcaaatgtttAAAGTCTTTGAATTGACATACTTATGGAt
agttaaggccggtctccacttgcgcgcgcttcgatcgcactttttcgagc
aaagcttccacgctattggtcaaaagaaaaatgaagcaactccattggcg
cgatctgacgtaacggttgaaaaaagttgaaatgtgttcaactttttttt
ccagcgcgcgctacatttttatgacgtaatcttttttccaagcaaaaacg
attgaagtcaaaaagtgcgatcgcagcgcgcgcaagtggagaccggcctt
tactaCAAACATTTTTGATGTCATTAAACCTGTAAAACTCAAATCGAAAT
CCCTTGTGGCAATAAGTCAATGAGATATAACTGAAGGCTAGAGTCGATTC
TCTCTTGAGCGATTTGAAGCCACATTTTCCTTCTTCGCGTGCTTTTCGTA
CAAACGAAGGAACGTTCGGAAGTAACATTTCTGCCAGAATtcgtaaaaaa
tataaagcgAAAACAAAAGAGTGCTAAATTCCATCAGTCATTGCGATGCA
CATCTTAACGCATCACTTTTTCCTCCTTTTTGAGGCCTCCTCATTCTAGC
CTTCGTCGGGTATACTTCAATGGTCAGGCttcataaatattttgaacgaa
cattttgaaatctttttcaggTGAATCGGAAGTTCTTCATCAAGACCATT
CATTTTACTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGATCGTT
GATTGGCTACCTGAACACATCGAGACAAAAACTCCACCTATGGACCCGAT
CTTTGGAACGCTGTTGAACCCTACTGGAGGTAATTTATTCTTCTTTATCG
ACCCCGCTTTCTTAGCCGACCCTAATAATGTGTTGTATGCCTAATAAAAA
CTGGTATAACGCAAGTGGAAATATATTCATAATGAGgtatttataaagaa
aaagggtCTTAGTAGACGAAATTTACAAATTAATCAAAAAGTAATTTCAG
CTAACCCTTCGTTAGCTGGCCATAGTTTGAAATCACTTGCATTGAAAATG
TCCTGTTTTGTTtgaaccctattcgtactagggggggagctgtttctgtt
cgggggttaataaaaaaagagcttttggcatgaaattatcTGTAAATTCT
TAACTGAGGCAAACGTTTGATATTAATTGAGATCGACAGTataaactgaa
aatttatttgaagtGGACTTTAAATTAGCTTTTATTTTGAACTCGATTAT
ATGGCCAGTTTTTTGCCGTGTCTAATTCAAATATATAAAATCGGCAAAAA
CGAGGCAAAAGTTTGATATTAATTGAGATCGAcagtataaaatgaaaatt
catttgAAGTGGACTTTAAATAAGCTTTTATTTTGAACTCAACTTTAAAT
AAATTGAGGAAACCcctattttaaacaaaagaaacaaagaagttTGGTGT
CTTTTCACATGaaaacattattgtttgaattAAGATCGACAAAAAAGAAG
GCCGTTTAAACCAGTGCCGATCTTTTGCCGCTCTTTTTAATTAAGTTCAG
CAAAATTTGCCGTGTTCAATTGTTAAGGTCGAcctcaaatcaaaatttga
tttatacAGCCGCTCTTTTGCCGCACTCAATtagactttttttagttttt
ttgatgaAGTTATTTGAATTAGACACGGCAAAAAACCGGCCATATAAACT
ACGCCTTAGACACGGCAAAAAACCGGCCATATAAACTAcgcctaaaaata
aaaaaatttgacacttaaagaatttcacaccttgagcatgattaCATTTC
tcacagtaaggtgtcacaaaaattgacacattaCCAATACAATttgtttt
ttatgtcaaatatatcgtttaaaccgtaatttattgaatatttagtaTAG
AATAATCATTTGTTAGaaaacaatataacaatagcgttcagtttgaggtc
gttgttgttattttctgcccgcgtagtttgattattcgcccgatagtgtc
atttgggcccgaaTTTGGGCAGAATTTATGACAAAAACGAACGAAAACTt
tacgctattactattattatccatttTGGACATTCAAACagcgttttttt
ctagcgtcagccaagttttttcgcttcaatgcaatgtcttcaacaagttt
tgagtacccttgcgagcgggcGGCAAATGACCaagaagtgttttttttct
gacgttagttaagtctcaccgcttcaatgcaacaacttcaatccaattcc
gaGCGGGCTGCAAATGACGTTACTGCCCATAACcgggcggttaatgatat
ttcagccctctgaagcctgACGCGGTAATGACAATTTGAGTCACTTTCAT
TACCGCCCGCCGATtgaatctttaatggcttacttaatgaccgctatatg
gataaaaATAGCTATTTGTAAGAACAAAGGAAACTTTCgatttttgctca
ctttgagcatgatgagtgacgtcatcaaaaaattttcaaatttcatccaC
AATGATCCTCTAGATCAAAACTTACAGGAACAGCTCCgccctagttttga
accgccccaAATGCCTACTATGAATAGCAAATTCAAGAGCTTTCCGAAAT
GTTTTCGGAGACCCGCGAacaagattttaaatttaatgatTCCGGTGTTC
TAATTATTTCAGGGCGAGTTGGGCCAGGGGGACACTGGCTGGATGCACGA
TACTTTATTCGATGATTTGGGACCTTTTTGCATATCATTCAGCTGTTCAT
GATGGTTTCGgatatttgaaaacaaaccataATTCTGGTCCTGGATATTG
TTATTTGAACAAAGGAATTTTTGGTGATTGGAGTCCTTTTGGAGGACAAG
CTTTTGGGCTTGGATTTTGGACAGAGATCTGTGACAGAGAATGCCCTGCC
AAAGCTCCAGTAGAAagctttatttttaaataatatattagttagaaatt
ttaaataaattatttcaatattaccttaaattatatCCTACTTTCGGTGT
ACTTTCTTTTACTTGAGGCCTTAACCAGGCGTGGAT

Coding sequence (CDS) from alignment at sc0000117_pilon:131663..135448+

>MSTRG.14163.1.p1 ID=MSTRG.14163.1.p1|Name=MSTRG.14163.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2340bp|location=Sequence derived from alignment at sc0000117_pilon:131663..135448+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGAAATTGGATATCAGTGGAAAGAGGTAAAGAGAATGTTGGAGCAGT
CAAGAATTATTGCGAATCTGTTGTTTTTGTCAGGTTTTATGGACAGACGA
ACAGCATGAAGGGTCCTCAAGACCATGAAGAAGTGGACGGCCCTGATCAT
CACCCCAAAACACAACTCGGACACATTCTCAATAAACTCGATCAAGAAAT
TCGAAAAGCATCTGCTGCACATCAACTCGAAATAACAGATGAATTTAAAG
AGCTTTTGCGGGATGTTGCTAAATCCAGGGTGTGCACAAAAGAatgtgaa
aatgaagaagaatgtCATAAAAGGTTATTGGGGGATGCAGAGAAATTTGT
TGCAATCTATAAGAAACGTGGATgTGAATCGGAAGTTCTTCATCAAGACC
ATTCATTTTACTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGATC
GTTGATTGGCTACCTGAACACATCGAGACAAAAACTCCACCTATGGACCC
GATCTTTGGAACGCTGTTGAACCCTACTGGAGGGCGAGTTGGGCCAGGGG
GACACTGGCTGGATGCACGATACTTTATTCGATGAATGGGAAATTGGATA
TCAGTGGAAAGAGGTAAAGAGAATGTTGGAGCAGTCAAGAATTATTGCGA
ATCTGTTGTTTTTGTCAGGTTTTATGGACAGACGAACAGCATGAAGGGTC
CTCAAGACCATGAAGAAGTGGACGGCCCTGATCATCACCCCAAAACACAA
CTCGGACACATTCTCAATAAACTCGATCAAGAAATTCGAAAAGCATCTGC
TGCACATCAACTCGAAATAACAGATGAATTTAAAGAGCTTTTGCGGGATG
TTGCTAAATCCAGGGTGTGCACAAAAGAatgtgaaaatgaagaagaatgt
CATAAAAGGTTATTGGGGGATGCAGAGAAATTTGTTGCAATCTATAAGAA
ACGTGGATgTGAATCGGAAGTTCTTCATCAAGACCATTCATTTTACTGGG
GAACGCGACAGCAAATGTTGTTTGGCAAAGTGATCGTTGATTGGCTACCT
GAACACATCGAGACAAAAACTCCACCTATGGACCCGATCTTTGGAACGCT
GTTGAACCCTACTGGAGGGCGAGTTGGGCCAGGGGGACACTGGCTGGATG
CACGATACTTTATTCGATGAATGGGAAATTGGATATCAGTGGAAAGAGGT
AAAGAGAATGTTGGAGCAGTCAAGAATTATTGCGAATCTGTTGTTTTTGT
CAGGTTTTATGGACAGACGAACAGCATGAAGGGTCCTCAAGACCATGAAG
AAGTGGACGGCCCTGATCATCACCCCAAAACACAACTCGGACACATTCTC
AATAAACTCGATCAAGAAATTCGAAAAGCATCTGCTGCACATCAACTCGA
AATAACAGATGAATTTAAAGAGCTTTTGCGGGATGTTGCTAAATCCAGGG
TGTGCACAAAAGAatgtgaaaatgaagaagaatgtCATAAAAGGTTATTG
GGGGATGCAGAGAAATTTGTTGCAATCTATAAGAAACGTGGATgTGAATC
GGAAGTTCTTCATCAAGACCATTCATTTTACTGGGGAACGCGACAGCAAA
TGTTGTTTGGCAAAGTGATCGTTGATTGGCTACCTGAACACATCGAGACA
AAAACTCCACCTATGGACCCGATCTTTGGAACGCTGTTGAACCCTACTGG
AGGGCGAGTTGGGCCAGGGGGACACTGGCTGGATGCACGATACTTTATTC
GATGAATGGGAAATTGGATATCAGTGGAAAGAGGTAAAGAGAATGTTGGA
GCAGTCAAGAATTATTGCGAATCTGTTGTTTTTGTCAGGTTTTATGGACA
GACGAACAGCATGAAGGGTCCTCAAGACCATGAAGAAGTGGACGGCCCTG
ATCATCACCCCAAAACACAACTCGGACACATTCTCAATAAACTCGATCAA
GAAATTCGAAAAGCATCTGCTGCACATCAACTCGAAATAACAGATGAATT
TAAAGAGCTTTTGCGGGATGTTGCTAAATCCAGGGTGTGCACAAAAGAat
gtgaaaatgaagaagaatgtCATAAAAGGTTATTGGGGGATGCAGAGAAA
TTTGTTGCAATCTATAAGAAACGTGGATgTGAATCGGAAGTTCTTCATCA
AGACCATTCATTTTACTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAG
TGATCGTTGATTGGCTACCTGAACACATCGAGACAAAAACTCCACCTATG
GACCCGATCTTTGGAACGCTGTTGAACCCTACTGGAGGGCGAGTTGGGCC
AGGGGGACACTGGCTGGATGCACGATACTTTATTCGATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14163MSTRG.14163Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14163.1.p1MSTRG.14163.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14163.1.p1.exon1MSTRG.14163.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14163.1.p1.exon2MSTRG.14163.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14163.1.p1.exon3MSTRG.14163.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14163.1.p1.exon4MSTRG.14163.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117_pilongenomesc0000117_pilon:131663..135448 +