MSTRG.16623.1.p1 (mRNA) -

Overview
NameMSTRG.16623.1.p1
Unique NameMSTRG.16623.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000159_pilon:106014..107434-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.16623.1.p1 ID=MSTRG.16623.1.p1|Name=MSTRG.16623.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1421bp|location=Sequence derived from alignment at sc0000159_pilon:106014..107434- (Clytia hemisphaerica_ch_hm2_pilon)
ATATCATTTCATTATTGTAAGACATTCGTACTGTTGCGATTTCCGTGATT
AGCTTGTTTGTAAGATTATTCAATTGTCCTAACAATTCCATTGTCTTTAG
AATTCTATTGTTGACCTGACCTAAGTTATTAGTATAAAAGAACCATGCTT
GGACTTAAAAATCACACTCAAACAGTGGAACCTAATCTAAAGAATTGGCT
AACAACCACCAATGATGAACTCGATAGTGGTACTGATCAGCTATGCGCTT
TTGAACTGTAAGTATTTTCATTCGATTTCTTTTTTATTTCTTGATACCCG
TAGTGCACCACTACCAGTACTTGATAACCTTTTACCTCTTCGACTGAAGA
TCCTATCTCTTATATTTCATTTTTCTTTTCACGCTTATACATATTTATAA
CAAATTTTCTTCAAACATGCTTGCAATGAATATTTCTGATTATTTTGATA
AGTATTTTTCAACAGATGAATGTAATATCATCTTGCAAGACGAACTGATT
TTCTCATCCCTAAGTTTTTCATTTCTTATTTCTCAGCTGTTTCCGCATTC
TTTCCGGTAAAAATCACCGGACCTACCCCACCACCGGTACCATGCTCCAA
CAGTCAATGTCACGGAAAGCCCGATGGTAACTTTGAATATATTAACCCGA
AAACATACAAGAAGAACCAACATTATTTCTTACAATGTAGTGATGGAGTA
GCCTCTTGTCAAGCATGTTGGCCATCCAGTCTAGTATTCAAAGAGGATTG
CAACCAATGTCTTTATTCTCAACATGGTAAGATATTGTTTATTTGTTTTC
TAAAAATTTGAATCGAGTTTGTTTGAAAGTGACAATGTCGGAAAATATCT
AAGTATATATAAGTTTGTTTTATCATTTAAAAGAACAAGAAATAAAGGGA
ATTACCAAAAGACACCCAGAATATGTCCAAATTTTTGACTTTTAGTCAAT
CCTATCCATGCTGATGTCGGATATGAAACATTTTGACAAAGAGTATTTTT
ATATCCACTATTTTTCAGACGAATGTGTTACATCTAAACCGTTCAAACCA
GCTACCACCTTCGCATGTCCGGATATATGTCCACAACAAGGTCCTAAATT
TTCTGGAAACATTAACGATCCAAACCAGCCAAGACAGTATGTAGCATGTT
GGAAGGGTGTTACCGTCGGGTGTATTTCTTGTCCTCCCAAATTGGTTTTT
AACAGACGTTGGAATGCATGTCTTCATTCAGGTGGATTTAAACAAGTTCC
ACCAGGTCGTACAGATTTGGATTATCCACCTTACGGAAAGTAAACCAACT
GGAACGGAACAGAATCTTCATAATTTCTATACCTAATTTCTTGATTTTAT
TTTTCAAAAACCAAATTTTACTTATAGTTACACCTTCAAGATTTAAATAT
CTTTTAGTTCAATAAAGAAAT

Coding sequence (CDS) from alignment at sc0000159_pilon:106014..107434-

>MSTRG.16623.1.p1 ID=MSTRG.16623.1.p1|Name=MSTRG.16623.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1683bp|location=Sequence derived from alignment at sc0000159_pilon:106014..107434- (Clytia hemisphaerica_ch_hm2_pilon)
ACGAATGTGTTACATCTAAACCGTTCAAACCAGCTACCACCTTCGCATGT
CCGGATATATGTCCACAACAAGGTCCTAAATTTTCTGGAAACATTAACGA
TCCAAACCAGCCAAGACAGTATGTAGCATGTTGGAAGGGTGTTACCGTCG
GGTGTATTTCTTGTCCTCCCAAATTGGTTTTTAACAGACGTTGGAATGCA
TGTCTTCATTCAGGTGGATTTAAACAAGTTCCACCAGGTCGTACAGATTT
GGATTATCCACCTTACGGAAAGTAACTGTTTCCGCATTCTTTCCGGTAAA
AATCACCGGACCTACCCCACCACCGGTACCATGCTCCAACAGTCAATGTC
ACGGAAAGCCCGATGGTAACTTTGAATATATTAACCCGAAAACATACAAG
AAGAACCAACATTATTTCTTACAATGTAGTGATGGAGTAGCCTCTTGTCA
AGCATGTTGGCCATCCAGTCTAGTATTCAAAGAGGATTGCAACCAATGTC
TTTATTCTCAACATGATGATGAACTCGATAGTGGTACTGATCAGCTATGC
GCTTTTGAACTACGAATGTGTTACATCTAAACCGTTCAAACCAGCTACCA
CCTTCGCATGTCCGGATATATGTCCACAACAAGGTCCTAAATTTTCTGGA
AACATTAACGATCCAAACCAGCCAAGACAGTATGTAGCATGTTGGAAGGG
TGTTACCGTCGGGTGTATTTCTTGTCCTCCCAAATTGGTTTTTAACAGAC
GTTGGAATGCATGTCTTCATTCAGGTGGATTTAAACAAGTTCCACCAGGT
CGTACAGATTTGGATTATCCACCTTACGGAAAGTAACTGTTTCCGCATTC
TTTCCGGTAAAAATCACCGGACCTACCCCACCACCGGTACCATGCTCCAA
CAGTCAATGTCACGGAAAGCCCGATGGTAACTTTGAATATATTAACCCGA
AAACATACAAGAAGAACCAACATTATTTCTTACAATGTAGTGATGGAGTA
GCCTCTTGTCAAGCATGTTGGCCATCCAGTCTAGTATTCAAAGAGGATTG
CAACCAATGTCTTTATTCTCAACATGATGATGAACTCGATAGTGGTACTG
ATCAGCTATGCGCTTTTGAACTACGAATGTGTTACATCTAAACCGTTCAA
ACCAGCTACCACCTTCGCATGTCCGGATATATGTCCACAACAAGGTCCTA
AATTTTCTGGAAACATTAACGATCCAAACCAGCCAAGACAGTATGTAGCA
TGTTGGAAGGGTGTTACCGTCGGGTGTATTTCTTGTCCTCCCAAATTGGT
TTTTAACAGACGTTGGAATGCATGTCTTCATTCAGGTGGATTTAAACAAG
TTCCACCAGGTCGTACAGATTTGGATTATCCACCTTACGGAAAGTAACTG
TTTCCGCATTCTTTCCGGTAAAAATCACCGGACCTACCCCACCACCGGTA
CCATGCTCCAACAGTCAATGTCACGGAAAGCCCGATGGTAACTTTGAATA
TATTAACCCGAAAACATACAAGAAGAACCAACATTATTTCTTACAATGTA
GTGATGGAGTAGCCTCTTGTCAAGCATGTTGGCCATCCAGTCTAGTATTC
AAAGAGGATTGCAACCAATGTCTTTATTCTCAACATGATGATGAACTCGA
TAGTGGTACTGATCAGCTATGCGCTTTTGAACT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.16623MSTRG.16623Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.16623.1.p1MSTRG.16623.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.16623.1.p1.exon3MSTRG.16623.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.16623.1.p1.exon2MSTRG.16623.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.16623.1.p1.exon1MSTRG.16623.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000159_pilongenomesc0000159_pilon:106014..107434 -