TCONS_00013545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013545
Unique NameTCONS_00013545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013545 ID=TCONS_00013545|Name=TCONS_00013545|organism=Clytia hemisphaerica|type=transcript|length=325bp
CTCTCCAAAAAATAACAAACGTGGGTGGCACAAAGACTACCCAAAGAGAA
AAATACCTCAAAAAAGACACGTCAAAAATTAAAGGCAATGTGCCACCAGA
AAATGCATGTATGCCAGAAAGGAAACCCTAACACTGAAAATATTACAGGT
TCTGGCTGGCTAGGaatatatacaaaaattatATGGAAATAAAATACTCA
CTAAAATCACTGTCGAAATTCACTCCCACAACACGACGATCCTCACTCAT
GAAAACATAAAAAACATCTCACATCTCAAAAATTCGTaagtctcaaaaac
tgaaatgaGCAGAAAAACGTCACTG
Run BLAST on NCBI

transcript from alignment at sc0000168:506019..506343

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013545 ID=TCONS_00013545|Name=TCONS_00013545|organism=Clytia hemisphaerica|type=transcript|length=325bp|location=Sequence derived from alignment at sc0000168:506019..506343 (Clytia hemisphaerica)
CAGTGACGTTTTTCTGCtcatttcagtttttgagacttACGAATTTTTGA
GATGTGAGATGTTTTTTATGTTTTCATGAGTGAGGATCGTCGTGTTGTGG
GAGTGAATTTCGACAGTGATTTTAGTGAGTATTTTATTTCCATataattt
ttgtatatattCCTAGCCAGCCAGAACCTGTAATATTTTCAGTGTTAGGG
TTTCCTTTCTGGCATACATGCATTTTCTGGTGGCACATTGCCTTTAATTT
TTGACGTGTCTTTTTTGAGGTATTTTTCTCTTTGGGTAGTCTTTGTGCCA
CCCACGTTTGTTATTTTTTGGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007572XLOC_007572Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013545-exon-sc0000168-1491911889:506019..506343TCONS_00013545-exon-sc0000168-1491911889:506019..506343Clytia hemisphaericaexon
TCONS_00013545-exon-sc0000168-1510915933:506019..506343TCONS_00013545-exon-sc0000168-1510915933:506019..506343Clytia hemisphaericaexon
TCONS_00013545-exon-sc0000168-1575043694:506019..506343TCONS_00013545-exon-sc0000168-1575043694:506019..506343Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:506019..506343 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.27918	3.57831	2.9771	2.61691	1.23726	0.6518	1.96592	3.31285	1.03085	1.27687	1.02032	1.62941	4.65772	6.54802	1.17866	1.67724	0	0.235313	0	0.680382	0	0	2.80521	1.27517	0.328349	0.293044	0.419345	0	0	0.345836
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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