MSTRG.17723.1.p1 (mRNA) -

Overview
NameMSTRG.17723.1.p1
Unique NameMSTRG.17723.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000182_pilon:161112..164581-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17723.1.p1 ID=MSTRG.17723.1.p1|Name=MSTRG.17723.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3470bp|location=Sequence derived from alignment at sc0000182_pilon:161112..164581- (Clytia hemisphaerica_ch_hm2_pilon)
AGTTTATCAAATTAAAATGAATACCAACTGGAAATATGATGACTTACTTA
AGGGAAAATTGGAGTTGTATGTTGCTCAATGTTTGAAACGAACTGAGATT
GTTGAACTTATGAAAAAAGAATTTGGCAACTATCCTTGGAGTTTGAGTAC
TCTAACCAGGAGATTCAATCATTTTGGAATTAGATATACTGATACTGAAG
TTCCTGTCGAGTCTGTCAGAGAAGCTGTTTCAACTGAACTTCGAGGTCCA
GGGCGACTTTTGGGCTACAGAGCCATGCATAAAAAACTACGTGTTGTTCA
TGGTTTGAAAGTTCCTAGGAGTCTTGTTCATGATGTTATGTTTTTGGAAG
AAAGTCAATTACTGAAGGACAGAAGACCCTGTCAGAAGAAAAAGAGAGTG
AAGGGTCATTTTGTATCAAATGGACCTAATTGGGTACACTCCTTTGATGG
CCATGATAAGCTTATGGGCTATCAGAACAGCACCTTCCCTCTAGCTGTGT
ATGGCTGTATCGACACTGCTAGTCGAAAGATACTTTGGCTCAAAATTTGG
ACTTCTAACAGCGACCCAAAGCTTGTTGGTAAATGGTATCTTCAACATAT
CATTGAGACGAAAAGGATTTCAAATATGGTTCGCCTTGATAAAGGTACTG
AAACAGGTGATCTTGCGGCTATTCATTGTTTTCTGCGTTCCCGTTGTGAC
GAAAACTTGGAAGACCCTTCATCTGTGATACACTATGGTCCATCAACCTC
AAATCAGGTACTTTATAGGATTAATTTAAGAAACAACAATTGCGAAGTAA
AACATCATCTTTTGTCTGAGGTTGAAAACGCAGAAATACTACAATTAAAT
AGATTACACTTTTTTATAAGGACACGAAAAGCCTTCAGATGTTCTAGATT
TTTTGAACTTTCAGCCTAACAACGTTCTTAAAATGTTCTTATTTTTGGAG
GTTTTTATTTCCTAAGAAATTGCATATTTTGTAGTCTTCAAAGCCTTCAA
ATGTTCTTGCTATGTACTCCTGTGTACTAATTTTTTTGGCCCTCAAAGCC
AAGAAAAAACCCGTCAATCTCATTTGAAGACTACAAAATATGCAATTTCT
TAGGAAATGGTACCGAAATACTAAAAACATTTCTACAATCATTTTTGGCT
TTCCTCAGAGCGTTTTTGAAGGAAATTGCACTTGAAATGTAAGAAAATAT
TGCTCGTGTAGCCTTAGCTGTCATAAAGTTTGTGTAATTTGTAACAGGGT
ATTTAAGAGAAGGTCAGACTTTGGAGTAAACTGTAGATTGTGTTCTTTGG
AGTAAACTGTACATTGTGTTACTGCTCATTTTGAAGGAGATAACAACCTC
TCATTTTGTCTTCATCAACTGTTTTTTTGAAACTCAAAACCAATTTCAAA
ATGTTTAAATACATATGTTATTCTCTTTGGTTTATGAAATATTTAAAACA
CTTTTTTATTGGTATAGATTGAGCGATGGTGGAAAGAACTACATGAAAGA
CTAGAGAAATTCTTCAAAGGTCAACTCCTGTTCTTAAAATGTGGCGGACA
TTATGATCCAAGTTGTGAACAAGACAGGTAATTTGCTTTACATCAATCTT
ATTTTCTGCATGCAATAATTGACCAAAGATGAATATTAAGATCCGATAAC
GCTCCGCAACGCATACGTCAAGTTATTGAGGTTCAAGTTATTGTTTCATA
ATGTTCAGTGTTTGATATAGAAATATCTGTTCGCCTTTTTAGACACCATG
TCTGCAAACTGTGGCAAAAACTGTTAAAATTTAAAAGAGTTTTGACTTTT
GATGGTACCATTCAGTATGCTTTTGTACTTTTAGGATGATTTTAGCCTAT
ATCATGATCCCAATCCTCCAAGCCGAACTTAACACATTCAAAGATGTCAT
CTGGAATTGCCATCGCATTAGATATCAAAAAGACCAAGTTTTACCAGACG
GTGTTCCCAACCACATTTATACCGTACCTGAGGTGCATGACCTTGTTGAA
TGTGGTAAGTTCCAGTCAACTTTTATTCGATTATTGATGTCTTCAGCTCA
GTTTTTGCGAAGTTAATCTGTGGCAAATCTTTTTTACAATACTTAGGTAT
TTGCTTCCAGGCACATACGCTAATCGTTGATCTTTACAGCGTAATTTTGA
TGAACCAGGCATAGTGTCCTTCAGGGTCTCTTCCCCCCATGCCTAGAATG
AAAATTTTCCATCCCCCCCCCTCATTTTTCCCCACCCTGCCTCCAAAGAT
TTTTCTGTCCCCCCCCCTCAAGCATAAAATTAAAAAGCTGTAATTTGATG
AACTTAACGCTTATTGTTTTCCCTAAGTTAGTTCTAATTCAAGAATAAAT
GGAAAGGATGGTTGTTTTTAAACCATAATATTAATAAAACTAAGCATTAT
GCTATATCATCTCATAAAACCAGTTGTTTTTCAATTTTGAATTGATTTTG
GTGAGTCCCCCCCCCCATGCCTAGAGTGAAAATTTTCCATTCCCCCCACC
CTGGCTTCAAAAAAAATTCTTTCCCCCCTATACGTCCTTTTGACCTCAAA
ACCCATCCCCCCCCCTGAATCCAGGGGGGGAGGACACTATGCCAGGTACA
CGCTTTTTTTTATAAGAATAGTGAACTTTGGATGAGGGTCAAATATTCTT
AAGAAATTGCCAAAATTGAGGGTGAAATAATTCTTAACGTATTCTTACTT
TTTTAGACTTGACTTTTTTACAAACACGAGAAATGATTTTTTGAGAATTT
GGCTTTTTGAAGCTAACATTACATTCAGCCTCAAAGTTTAAATTCAAATC
TAACAAAGGAAGCAGTTTCTTTCTGATAACCAAATAAAAATGACTACCCA
AATTCTGTGTAACTCACACTGAGGGTATTCATAGAGTATTCTTACGATTT
GGCCAATTTTCACCCTGATATTCTTATATAAAAAGCGTGTAGCATAAGTT
TTTACTAAACCTCGTAAAGAAATTTCACTTTAGTAATGAAACATTTTGTG
GCGTCTCCGGTACTTTAGACCCCAAGTTTAAAAAAAAGCAATCTTGGAAT
TTATAAACTCTTTTATTTATCTCCTCCCCGTGTACTTCTTGACTGACCTT
CTTCATTGTAGGCTTTGATGTATCAGACCAGGATATCCAATCCCTTATAG
ATGAATCGGGAATCACACCAGAAGATGCCGACTACCTTGATGATGATTTT
AGGCATCTATGTGAACAATATCTACCAAATCTAGAGCTCGTTAAACCTCA
TGAATGTCAGGAAGCGTATATATACTTAAAACGAGAGATTGAAAATGGCA
GTTTTTAAGAAACTTAACAATTAAGTTTTTTTTCTCCATACCGTATTTCC
TCTAACTACTTTAATGGGATAAACTTTCGCGGGGATTAAATTTCGCGGAT
TTCGCGGATTTGGGTGTCATCCGCGAATTATTTCTAAACAAAACTCAAAA
TATGTCAAATAAATACTATT

Coding sequence (CDS) from alignment at sc0000182_pilon:161112..164581-

>MSTRG.17723.1.p1 ID=MSTRG.17723.1.p1|Name=MSTRG.17723.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4932bp|location=Sequence derived from alignment at sc0000182_pilon:161112..164581- (Clytia hemisphaerica_ch_hm2_pilon)
GCTTTGATGTATCAGACCAGGATATCCAATCCCTTATAGATGAATCGGGA
ATCACACCAGAAGATGCCGACTACCTTGATGATGATTTTAGGCATCTATG
TGAACAATATCTACCAAATCTAGAGCTCGTTAAACCTCATGAATGTCAGG
AAGCGTATATATACTTAAAACGAGAGATTGAAAATGGCAGTTTTTAAGAT
GATTTTAGCCTATATCATGATCCCAATCCTCCAAGCCGAACTTAACACAT
TCAAAGATGTCATCTGGAATTGCCATCGCATTAGATATCAAAAAGACCAA
GTTTTACCAGACGGTGTTCCCAACCACATTTATACCGTACCTGAGGTGCA
TGACCTTGTTGAATGTGATTGAGCGATGGTGGAAAGAACTACATGAAAGA
CTAGAGAAATTCTTCAAAGGTCAACTCCTGTTCTTAAAATGTGGCGGACA
TTATGATCCAAGTTGTGAACAAGACAGGTTTATCAAATTAAAATGAATAC
CAACTGGAAATATGATGACTTACTTAAGGGAAAATTGGAGTTGTATGTTG
CTCAATGTTTGAAACGAACTGAGATTGTTGAACTTATGAAAAAAGAATTT
GGCAACTATCCTTGGAGTTTGAGTACTCTAACCAGGAGATTCAATCATTT
TGGAATTAGATATACTGATACTGAAGTTCCTGTCGAGTCTGTCAGAGAAG
CTGTTTCAACTGAACTTCGAGGTCCAGGGCGACTTTTGGGCTACAGAGCC
ATGCATAAAAAACTACGTGTTGTTCATGGTTTGAAAGTTCCTAGGAGTCT
TGTTCATGATGTTATGTTTTTGGAAGAAAGTCAATTACTGAAGGACAGAA
GACCCTGTCAGAAGAAAAAGAGAGTGAAGGGTCATTTTGTATCAAATGGA
CCTAATTGGGTACACTCCTTTGATGGCCATGATAAGCTTATGGGCTATCA
GAACAGCACCTTCCCTCTAGCTGTGTATGGCTGTATCGACACTGCTAGTC
GAAAGATACTTTGGCTCAAAATTTGGACTTCTAACAGCGACCCAAAGCTT
GTTGGTAAATGGTATCTTCAACATATCATTGAGACGAAAAGGATTTCAAA
TATGGTTCGCCTTGATAAAGGTACTGAAACAGGTGATCTTGCGGCTATTC
ATTGTTTTCTGCGTTCCCGTTGTGACGAAAACTTGGAAGACCCTTCATCT
GTGATACACTATGGTCCATCAACCTCAAATCAGGCTTTGATGTATCAGAC
CAGGATATCCAATCCCTTATAGATGAATCGGGAATCACACCAGAAGATGC
CGACTACCTTGATGATGATTTTAGGCATCTATGTGAACAATATCTACCAA
ATCTAGAGCTCGTTAAACCTCATGAATGTCAGGAAGCGTATATATACTTA
AAACGAGAGATTGAAAATGGCAGTTTTTAAGATGATTTTAGCCTATATCA
TGATCCCAATCCTCCAAGCCGAACTTAACACATTCAAAGATGTCATCTGG
AATTGCCATCGCATTAGATATCAAAAAGACCAAGTTTTACCAGACGGTGT
TCCCAACCACATTTATACCGTACCTGAGGTGCATGACCTTGTTGAATGTG
ATTGAGCGATGGTGGAAAGAACTACATGAAAGACTAGAGAAATTCTTCAA
AGGTCAACTCCTGTTCTTAAAATGTGGCGGACATTATGATCCAAGTTGTG
AACAAGACAGGTTTATCAAATTAAAATGAATACCAACTGGAAATATGATG
ACTTACTTAAGGGAAAATTGGAGTTGTATGTTGCTCAATGTTTGAAACGA
ACTGAGATTGTTGAACTTATGAAAAAAGAATTTGGCAACTATCCTTGGAG
TTTGAGTACTCTAACCAGGAGATTCAATCATTTTGGAATTAGATATACTG
ATACTGAAGTTCCTGTCGAGTCTGTCAGAGAAGCTGTTTCAACTGAACTT
CGAGGTCCAGGGCGACTTTTGGGCTACAGAGCCATGCATAAAAAACTACG
TGTTGTTCATGGTTTGAAAGTTCCTAGGAGTCTTGTTCATGATGTTATGT
TTTTGGAAGAAAGTCAATTACTGAAGGACAGAAGACCCTGTCAGAAGAAA
AAGAGAGTGAAGGGTCATTTTGTATCAAATGGACCTAATTGGGTACACTC
CTTTGATGGCCATGATAAGCTTATGGGCTATCAGAACAGCACCTTCCCTC
TAGCTGTGTATGGCTGTATCGACACTGCTAGTCGAAAGATACTTTGGCTC
AAAATTTGGACTTCTAACAGCGACCCAAAGCTTGTTGGTAAATGGTATCT
TCAACATATCATTGAGACGAAAAGGATTTCAAATATGGTTCGCCTTGATA
AAGGTACTGAAACAGGTGATCTTGCGGCTATTCATTGTTTTCTGCGTTCC
CGTTGTGACGAAAACTTGGAAGACCCTTCATCTGTGATACACTATGGTCC
ATCAACCTCAAATCAGGCTTTGATGTATCAGACCAGGATATCCAATCCCT
TATAGATGAATCGGGAATCACACCAGAAGATGCCGACTACCTTGATGATG
ATTTTAGGCATCTATGTGAACAATATCTACCAAATCTAGAGCTCGTTAAA
CCTCATGAATGTCAGGAAGCGTATATATACTTAAAACGAGAGATTGAAAA
TGGCAGTTTTTAAGATGATTTTAGCCTATATCATGATCCCAATCCTCCAA
GCCGAACTTAACACATTCAAAGATGTCATCTGGAATTGCCATCGCATTAG
ATATCAAAAAGACCAAGTTTTACCAGACGGTGTTCCCAACCACATTTATA
CCGTACCTGAGGTGCATGACCTTGTTGAATGTGATTGAGCGATGGTGGAA
AGAACTACATGAAAGACTAGAGAAATTCTTCAAAGGTCAACTCCTGTTCT
TAAAATGTGGCGGACATTATGATCCAAGTTGTGAACAAGACAGGTTTATC
AAATTAAAATGAATACCAACTGGAAATATGATGACTTACTTAAGGGAAAA
TTGGAGTTGTATGTTGCTCAATGTTTGAAACGAACTGAGATTGTTGAACT
TATGAAAAAAGAATTTGGCAACTATCCTTGGAGTTTGAGTACTCTAACCA
GGAGATTCAATCATTTTGGAATTAGATATACTGATACTGAAGTTCCTGTC
GAGTCTGTCAGAGAAGCTGTTTCAACTGAACTTCGAGGTCCAGGGCGACT
TTTGGGCTACAGAGCCATGCATAAAAAACTACGTGTTGTTCATGGTTTGA
AAGTTCCTAGGAGTCTTGTTCATGATGTTATGTTTTTGGAAGAAAGTCAA
TTACTGAAGGACAGAAGACCCTGTCAGAAGAAAAAGAGAGTGAAGGGTCA
TTTTGTATCAAATGGACCTAATTGGGTACACTCCTTTGATGGCCATGATA
AGCTTATGGGCTATCAGAACAGCACCTTCCCTCTAGCTGTGTATGGCTGT
ATCGACACTGCTAGTCGAAAGATACTTTGGCTCAAAATTTGGACTTCTAA
CAGCGACCCAAAGCTTGTTGGTAAATGGTATCTTCAACATATCATTGAGA
CGAAAAGGATTTCAAATATGGTTCGCCTTGATAAAGGTACTGAAACAGGT
GATCTTGCGGCTATTCATTGTTTTCTGCGTTCCCGTTGTGACGAAAACTT
GGAAGACCCTTCATCTGTGATACACTATGGTCCATCAACCTCAAATCAGG
CTTTGATGTATCAGACCAGGATATCCAATCCCTTATAGATGAATCGGGAA
TCACACCAGAAGATGCCGACTACCTTGATGATGATTTTAGGCATCTATGT
GAACAATATCTACCAAATCTAGAGCTCGTTAAACCTCATGAATGTCAGGA
AGCGTATATATACTTAAAACGAGAGATTGAAAATGGCAGTTTTTAAGATG
ATTTTAGCCTATATCATGATCCCAATCCTCCAAGCCGAACTTAACACATT
CAAAGATGTCATCTGGAATTGCCATCGCATTAGATATCAAAAAGACCAAG
TTTTACCAGACGGTGTTCCCAACCACATTTATACCGTACCTGAGGTGCAT
GACCTTGTTGAATGTGATTGAGCGATGGTGGAAAGAACTACATGAAAGAC
TAGAGAAATTCTTCAAAGGTCAACTCCTGTTCTTAAAATGTGGCGGACAT
TATGATCCAAGTTGTGAACAAGACAGGTTTATCAAATTAAAATGAATACC
AACTGGAAATATGATGACTTACTTAAGGGAAAATTGGAGTTGTATGTTGC
TCAATGTTTGAAACGAACTGAGATTGTTGAACTTATGAAAAAAGAATTTG
GCAACTATCCTTGGAGTTTGAGTACTCTAACCAGGAGATTCAATCATTTT
GGAATTAGATATACTGATACTGAAGTTCCTGTCGAGTCTGTCAGAGAAGC
TGTTTCAACTGAACTTCGAGGTCCAGGGCGACTTTTGGGCTACAGAGCCA
TGCATAAAAAACTACGTGTTGTTCATGGTTTGAAAGTTCCTAGGAGTCTT
GTTCATGATGTTATGTTTTTGGAAGAAAGTCAATTACTGAAGGACAGAAG
ACCCTGTCAGAAGAAAAAGAGAGTGAAGGGTCATTTTGTATCAAATGGAC
CTAATTGGGTACACTCCTTTGATGGCCATGATAAGCTTATGGGCTATCAG
AACAGCACCTTCCCTCTAGCTGTGTATGGCTGTATCGACACTGCTAGTCG
AAAGATACTTTGGCTCAAAATTTGGACTTCTAACAGCGACCCAAAGCTTG
TTGGTAAATGGTATCTTCAACATATCATTGAGACGAAAAGGATTTCAAAT
ATGGTTCGCCTTGATAAAGGTACTGAAACAGGTGATCTTGCGGCTATTCA
TTGTTTTCTGCGTTCCCGTTGTGACGAAAACTTGGAAGACCCTTCATCTG
TGATACACTATGGTCCATCAACCTCAAATCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17723MSTRG.17723Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17723.1.p1MSTRG.17723.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17723.1.p1.exon4MSTRG.17723.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17723.1.p1.exon3MSTRG.17723.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17723.1.p1.exon2MSTRG.17723.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17723.1.p1.exon1MSTRG.17723.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000182_pilongenomesc0000182_pilon:161112..164581 -