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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013430 ID=TCONS_00013430|Name=TCONS_00013430|organism=Clytia hemisphaerica|type=transcript|length=3748bp
GCGAaatgtttgaataaaaaaaaggttGTTTAAAAAGGAAAGCTATCAGG
CGAATATCAGCTGATTAAAGCACCTTGTATAGCCTTGCGCAGGCACTCTT
TTTGAAGACTGAGTCTGAGAGACGGAAAGGAGAAAAAGGCCGCGGCTTGA
AACAGAATGCGATGTGATTTGTATATTTGCTTATTGCATTTTCTATCTAA
GCTTCGAAAAGAGGGTACGTCAGATGCGAGTGATGCTGAACAACGTTTGA
AGCTTCTGGAAAACCAATTACGTCGAAAACGTTCCGAACTACAGAAATTA
CGTAAACAGAAGGAGAAAGAAAAACTTCGACAGAAGGAACAGGAATTACG
CCGAGAGCTTCAGGTTGTTGAACAGCAAATTAATAAAGAGAATATACCAG
CTGAAGTCAACTTACCTAAAGTCACACCTCGCGTCCTTTCTCCAAGAAGT
AGCCTCGATACCGTCATTTTACcagagaaaatcaaaattccaAGCGACAA
AGAATCTCGAAGGAGCTTAGATTTTTCGGACAGGGAATCGGAATCTGACC
GCAGTTTATCTTCCAATAAATCCAGTAAAGGAGATGCCAGTTCGTCACGT
CATTCAACGATCATTGCCACGGCAACCAACACTACCAGAAAATCACCAGA
TAGAGAATCTATCAAAGATGAATCCTCGAAATCCACATCTAAGACGTTAA
CCAAGTCAGATAAGAGTTCGTTGAAATCGGATAAATCGGTGAGTAGGATT
CTAACTGATACCACCAATAAGAAAGCGATATCTGAGAGACAGGACTCCAT
TGATGACATCAGTGATATCAGTGCTGGTAAAGACAGATCCAGTGTTTCTG
GTGAATCGAAAGAATCATCCATTGCTGAGGAGATCATTTCTACACAGANG
ACAGATCCAGTGTTTCTACTGAATCGAAAGAATCATCCATTGCTGAGGAG
ATCATTTCTACACAGACACCAAAAACATCTGTTAAAAGTCTTGATGCCAT
TTACGATGACGATCTTTTTGAAAGTGAACTTTCGTTGTCTTCTTCGACGT
CAACGTCGATTTCACAGGAGAAAACGTCGTCTAAAATAAGCTTGTCGTCA
AAAGAAACGTCGCGTAGTAATGCTTCTACGGCAAGAAGTACATCGCGCGA
ATCGACGTTGGAAGAAAAGAGCGTATCTCCAAACGCAACTTTGGATGAGA
AGACACCATCCGTTAGAGAAAGCTTACCACCAGAAGTTGACAAATCAATC
ACAAAATTCTCAGTTAGTGAAGAAGTGCCAGTAGATCCAATATCACaaaa
agaggagactctaaaaGAATCCAAAATCGAAATTGTCGAATATTCGAGTA
AATTCGAAAGTGGCGAATCGACCGTTCGCTCGGAGCGATCAGAGAAAGAC
ATTAAAGTGAACAAAAGTGAACCCATTTCTAAAGATGCTACGGAAGTTGA
TACTAACCGTTCCATTAGTGAGAAACTACATTCTAACCATTCAACATCCC
GCAGCATAACAAGTAGTCTAAGTAAGACTTCTTCAACTACAAGTCGTAGC
AGTCTACCGGCTCAAGACGAGTTTTCCAAATCGAACGTAAGCAACGCGTA
CGGATTCCGTGTAAATGAACGTGTCAAAGTCGAAGGTTCACTTATGGGAA
CTATTCGTTATCTCGGGAAAACGTCTTTTTCACCAGTATTGGTAGCTGGG
ATTGAACTTGATGAACCGTTAGGCACCAATGATGGTACATTCCACGATAA
ACAATACTTTAAATGTGCTCAAGACCATGGTTTTTTCACCACTATTGAAC
GTCTCCAACATTTCAACAGTGAAGTTGATAAAGTTGACAAGCAGGAAAAA
AATACCGAGAAGTCTTTGTCGTCGACGACTCTCGAAGAAATTGACGAATC
TTTAGATCAAGCATCGGTAAAAGAAGACTCGTTAAAATCGACATCGTTGA
AAGAAAGCTCCCTCAAGTCAACTTCGGTAAGAGAAAACTCCGTCAAATCA
ACATCGGTAAAAGCATCAGTTAAAGACTCTATCGAGGATGACGAGCAGGC
ATCCGTTAAGTCGTACTCCGAACATTTCGAGCCAGTGCCAGGGGCACCGA
CAACACAGAAAACAACAATGCATATAGATCCATTCACAACCTCCAAGAAA
ACAGATTCTTCACACCAACAACGCTATACAACTGATGACCATTCGTCAAG
CTCAACGACTATAGGAGAAACAACAAAATCCATAGAAATTGAGCTAGACG
AAATTGCTGCAAAAACGGACGATACTGCGTCTACGATATCGGTAGAAATT
CCATCACCTAAAAAGCTGGACACCCATACTTTAGCTGATAACATCACCGA
CAGCCTCTTGAAATCAATAATCTTAGATTCTGTTCAAGCAATGTCCCCAC
GTCTAGATTCCATTGAATCGCCACAAAAATCAGCGTCCAGTGAGGAAGAA
CCTGCAAGTTCCAAAAGCTCGTCTAAGGATATGGAGACACCAGTACATTC
AACTTCAAAACCCAAACCACACTTGCAAATAGACAACCACGCAGAAAATG
TCTGCAAATCTCTCTTGAACGATGCTGTTTCTGTCATGCTGGAAGTTGGA
CGAAAGAaggatgaaaaattaaattcggACAAAGAAAACGAAGTTGAATC
TCAACGTAGTAAAGAAGACTTTTTATCCTTGATCATTCCTGGTGTTAATG
ATATGGATGAAGATCTAGATTCAGATAGTGATAAGGAAAACAATGTACTT
TCTCAGAAACGTGATCAACTTAAGAATCTACACGATGAAATGGATAAGTT
GTTTGAACGTGAACCAGAAGATGACCAAGACTTGGAACTCATTGAATCGG
TCGGTAAAGAAACTATGAAAGAAACGCCAAAGAAAGAACTACCATTACGT
ATCCCACTTAACGAAAAGGATACGAGAGAGATTGTGAATTTAGCATTACA
AGAGATCCAACgtcaaaacttttcaatgtcTGAATTAGAACGTTTGATTG
TGCCTGATAGTATTTTAGCTCTGGAAACGTATGGTGAAATTGATGTACCG
AGTACCATGCTTTATAAGACATTGATATTCGATTTGACTCTTCAACTTTA
TTGCGAATTGAAAGAGTTTCGTGATATACAGGCTAAACCGCGCCCAATCT
GGTTAAAACGTCCACGCAAAACTTTCTCCAAATTCACTCGTCAAGTGCAT
TTAGACGAGTCGAATAGTTTCCCCGATTTAGTGAAAGATCATGTGTGCGG
ATGTATCGGGTTACAATCCGGTCGCCCATCTTTGATGAAGTTGAAACGTA
AATTACCGTTGAACTTAGAGAAGAAAGATTACGTTGATGCTGTTTTAGTG
GACGAGCTAAGACAAGAAGAAGGACAATGGGTAAATTATGATGAAGATGA
GCTGAGAGTGAAATTCCAACTTGCAGATAACATATTGGAAAGTCTCCTGG
AAGAAACGGTAGATATTATCAATCAAGCTCTATCATGATCTCGCCGTTAA
aggtttgatatttttgttatatttgCATTTTTTCCAATCCGTCATATTGA
CAAATTagatatttattatttttgaaattttaattttccgctctttttct
ttactttgaactagtttattatatattatatataaaattgaaaaatttat
ttgtaCATAAACTCTCAGTATTAGCTTATTATTACtttagaatttttatt
caattcaGCTACTGTCTCTCTTACCCTAACTAAAATGATTCATCTTGC Run BLAST on NCBI transcript from alignment at sc0000167:484471..489714- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013430 ID=TCONS_00013430|Name=TCONS_00013430|organism=Clytia hemisphaerica|type=transcript|length=5244bp|location=Sequence derived from alignment at sc0000167:484471..489714- (Clytia hemisphaerica)
GCGAAATGTTTGAATAAAAAAAAGGTTGTTTAAAAAGGAAAGCTATCAGG
CGAATATCAGCTGATTAAAGCACCTTGTATAGCCTTGCGCAGGCACTCTT
TTTGAAGACTGAGTCTGAGAGACGGAAAGGAGAAAAAGGCCGCGGCTTGA
AACAGAATGCGATGTGATTTGTATATTTGCTTATTGCATTTTCTATCTAA
GCTTCGAAAAGGTAAGGTGTTCTTTTTTCTCGGGGCAATTTTAAAATTGA
TTTTTTTAATTGACTGCTAATGTTTTTTTTTTTTTAATGGTGCTAAAACA
TTTTTGTGGGTTTGGTTTATCCTTTTCGATCTCACTCTTTTTGGTGCTAA
TGGATTCTTGAGAAAAGGGGAGAGATTTTCGTCACTTGTCAATCAAGTTT
TTGTGCTCTGTAAAGAGTGTCGTCCGCAAATTGGATTAGTTTATTTTAAT
ATTGATACCCTCTGACTTAAGTTTAAAAATGTACATAATGCTCTTTCTTT
GGCCTCGTTTCTGTGGTATGTGGAGTTTTGAAACCATGAGGAAGATTAAA
AAACATTTCAGAATCCACCTATAATGATTTCAAAGCATTATGGAAAATCG
ACTGCGTGATCTTCAATTTGTGTTGCCATCATTAATCTACTCATCTTTAC
CTTTCCAATATTATTGACTTCTTTAAGTTATATTAATTTCAATATTATTG
CTATTGGGTAACAACGTAAGAAATGCCCACCTACATAAAGGGAGGTGTTT
AATGAAATATTTGTTCAGATGGTTTTCCCGATCTTTTGTTCTGCTAAATT
CGTTATGCAATATTGTTTTTGGAAACTTTGAAATTTTAAATTTTCCATTG
GCCATACTGTTTCATATTTGACTAATCAGCTGGATGATCTGGATGTAGTT
TTCAAAATTATATGATTGTGTTTTTTTTTCTTAGTTTGAACCAAACAATC
GGACTCAGTGTCATGGTTTGAGGCTGCTGAATTGTAGATATAACGCTCTT
TTTCTCTTAATACTAATTTCGTCATTTTCTTGTCTTAGAGGGTACGTCAG
ATGCGAGTGATGCTGAACAACGTTTGAAGCTTCTGGAAAACCAATTACGT
CGAAAACGTTCCGAACTACAGAAATTACGTAAACAGAAGGAGAAAGAAAA
ACTTCGACAGAAGGAACAGGAATTACGCCGAGAGCTTCAGGTAAAGTTTT
TTGTCAGTCTAGGACGTGAATCTTTCCTCTGCCAGGCTCAATAAGCTTGC
TTAGAACAAACACTTTCATAGTTTGAAAGTTTCATCTTCCGTTTAAAAAA
ACTTGGCCCTAATAGTCCTTTTCATATAATTTTGTATCTATGGTTTGATT
TAAAATTGTTTATAGATTTACAATGTCGGGACAATTTTTTGCTCATATGG
TAGAAGATGAACATTTCGTGCTGTTTCCTCACAGTGCTCGGCTTTCTTAG
TTTTACCCTTTTTGCTTTATATTTTTATTAATTTTCCACAACTAGTTTTC
TTCTATGTTTAAAAGATTTTTTTAAGCTCACAGAATAGATATCCTTATAA
TCGAACTTTCAGATAAAATTTATGTGTCACGACTTTCTATTTGCCTTGGT
CCTTAAAACGTTATTTACCAATGTTATCTTCGTGAAATAGATGATATTAT
TGAAAGAAACCTATGGTTTTCTTAACCTTGTCACATTGCGGTCTTAAATT
TCATCAAGTATTTGTTTTTTCTATTGATTTAGTCCTTTTTGGAAATGTAA
AGGTCATTTATGATGATTTTGAGGTTTCTTAGTAAACGAGTCAGGCTGTT
TTTTTTCGTTCCTTGAAAATACATTCGTTTTAAAGACATTCTCGATATTT
TTTTCATAGGTTGTTGAACAGCAAATTAATAAAGAGAATATACCAGCTGA
AGTCAACTTACCTAAAGTCACACCTCGCGTCCTTTCTCCAAGAAGTAGCC
TCGATACCGTCATTTTACCAGAGAAAATCAAAATTCCAAGCGACAAAGAA
TCTCGAAGGAGCTTAGATTTTTCGGACAGGGAATCGGAATCTGACCGCAG
TTTATCTTCCAATAAATCCAGTAAAGGAGATGCCAGTTCGTCACGTCATT
CAACGATCATTGCCACGGCAACCAACACTACCAGAAAATCACCAGATAGA
GAATCTATCAAAGATGAATCCTCGAAATCCACATCTAAGACGTTAACCAA
GTCAGATAAGAGTTCGTTGAAATCGGATAAATCGGTGAGTAGGATTCTAA
CTGATACCACCAATAAGAAAGCGATATCTGAGAGACAGGACTCCATTGAT
GACATCAGTGATATCAGTGCTGGTAAAGACAGATCCAGTGTTTCTGGTGA
ATCGAAAGAATCATCCATTGCTGAGGAGATCATTTCTACACAGANGACAG
ATCCAGTGTTTCTACTGAATCGAAAGAATCATCCATTGCTGAGGAGATCA
TTTCTACACAGACACCAAAAACATCTGTTAAAAGTCTTGATGCCATTTAC
GATGACGATCTTTTTGAAAGTGAACTTTCGTTGTCTTCTTCGACGTCAAC
GTCGATTTCACAGGAGAAAACGTCGTCTAAAATAAGCTTGTCGTCAAAAG
AAACGTCGCGTAGTAATGCTTCTACGGCAAGAAGTACATCGCGCGAATCG
ACGTTGGAAGAAAAGAGCGTATCTCCAAACGCAACTTTGGATGAGAAGAC
ACCATCCGTTAGAGAAAGCTTACCACCAGAAGTTGACAAATCAATCACAA
AATTCTCAGTTAGTGAAGAAGTGCCAGTAGATCCAATATCACAAAAAGAG
GAGACTCTAAAAGAATCCAAAATCGAAATTGTCGAATATTCGAGTAAATT
CGAAAGTGGCGAATCGACCGTTCGCTCGGAGCGATCAGAGAAAGACATTA
AAGTGAACAAAAGTGAACCCATTTCTAAAGATGCTACGGAAGTTGATACT
AACCGTTCCATTAGTGAGAAACTACATTCTAACCATTCAACATCCCGCAG
CATAACAAGTAGTCTAAGTAAGACTTCTTCAACTACAAGTCGTAGCAGTC
TACCGGCTCAAGACGAGTTTTCCAAATCGAACGTAAGCAACGCGTACGGA
TTCCGTGTAAATGAACGTGTCAAAGTCGAAGGTTCACTTATGGGAACTAT
TCGTTATCTCGGGAAAACGTCTTTTTCACCAGTATTGGTAGCTGGGATTG
AACTTGATGAACCGTTAGGCACCAATGATGGTACATTCCACGATAAACAA
TACTTTAAATGTGCTCAAGACCATGGTTTTTTCACCACTATTGAACGTCT
CCAACATTTCAACAGTGAAGTTGATAAAGTTGACAAGCAGGAAAAAAATA
CCGAGAAGTCTTTGTCGTCGACGACTCTCGAAGAAATTGACGAATCTTTA
GATCAAGCATCGGTAAAAGAAGACTCGTTAAAATCGACATCGTTGAAAGA
AAGCTCCCTCAAGTCAACTTCGGTAAGAGAAAACTCCGTCAAATCAACAT
CGGTAAAAGCATCAGTTAAAGACTCTATCGAGGATGACGAGCAGGCATCC
GTTAAGTCGTACTCCGAACATTTCGAGCCAGTGCCAGGGGCACCGACAAC
ACAGAAAACAACAATGCATATAGATCCATTCACAACCTCCAAGAAAACAG
ATTCTTCACACCAACAACGCTATACAACTGATGACCATTCGTCAAGCTCA
ACGACTATAGGAGAAACAACAAAATCCATAGAAATTGAGCTAGACGAAAT
TGCTGCAAAAACGGACGATACTGCGTCTACGATATCGGTAGAAATTCCAT
CACCTAAAAAGCTGGACACCCATACTTTAGCTGATAACATCACCGACAGC
CTCTTGAAATCAATAATCTTAGATTCTGTTCAAGCAATGTCCCCACGTCT
AGATTCCATTGAATCGCCACAAAAATCAGCGTCCAGTGAGGAAGAACCTG
CAAGTTCCAAAAGCTCGTCTAAGGATATGGAGACACCAGTACATTCAACT
TCAAAACCCAAACCACACTTGCAAATAGACAACCACGCAGAAAATGTCTG
CAAATCTCTCTTGAACGATGCTGTTTCTGTCATGCTGGAAGTTGGACGAA
AGAAGGATGAAAAATTAAATTCGGACAAAGAAAACGAAGTTGAATCTCAA
CGTAGTAAAGAAGACTTTTTATCCTTGATCATTCCTGGTGTTAATGATAT
GGATGAAGATCTAGATTCAGATAGTGATAAGGAAAACAATGTACTTTCTC
AGAAACGTGATCAACTTAAGAATCTACACGATGAAATGGATAAGTTGTTT
GAACGTGAACCAGAAGATGACCAAGACTTGGAACTCATTGAATCGGTCGG
TAAAGAAACTATGAAAGAAACGCCAAAGAAAGAACTACCATTACGTATCC
CACTTAACGAAAAGGATACGAGAGAGATTGTGAATTTAGCATTACAAGAG
ATCCAACGTCAAAACTTTTCAATGTCTGAATTAGAACGTTTGATTGTGCC
TGATAGTATTTTAGCTCTGGAAACGTATGGTGAAATTGATGTACCGAGTA
CCATGCTTTATAAGACATTGATATTCGATTTGACTCTTCAACTTTATTGC
GAATTGAAAGAGTTTCGTGATATACAGGCTAAACCGCGCCCAATCTGGTT
AAAACGTCCACGCAAAACTTTCTCCAAATTCACTCGTCAAGTGCATTTAG
ACGAGTCGAATAGTTTCCCCGATTTAGTGAAAGATCATGTGTGCGGATGT
ATCGGGTTACAATCCGGTCGCCCATCTTTGATGAAGTTGAAACGTAAATT
ACCGTTGAACTTAGAGAAGAAAGATTACGTTGATGCTGTTTTAGTGGACG
AGCTAAGACAAGAAGAAGGACAATGGGTAAATTATGATGAAGATGAGCTG
AGAGTGAAATTCCAACTTGCAGATAACATATTGGAAAGTCTCCTGGAAGA
AACGGTAGATATTATCAATCAAGCTCTATCATGATCTCGCCGTTAAAGGT
TTGATATTTTTGTTATATTTGCATTTTTTCCAATCCGTCATATTGACAAA
TTAGATATTTATTATTTTTGAAATTTTAATTTTCCGCTCTTTTTCTTTAC
TTTGAACTAGTTTATTATATATTATATATAAAATTGAAAAATTTATTTGT
ACATAAACTCTCAGTATTAGCTTATTATTACTTTAGAATTTTTATTCAAT
TCAGCTACTGTCTCTCTTACCCTAACTAAAATGATTCATCTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013430-exon-sc0000167-1575043694:489504..489714 | TCONS_00013430-exon-sc0000167-1575043694:489504..489714 | Clytia hemisphaerica | exon |
| TCONS_00013430-exon-sc0000167-1575043694:488525..488676 | TCONS_00013430-exon-sc0000167-1575043694:488525..488676 | Clytia hemisphaerica | exon |
| TCONS_00013430-exon-sc0000167-1575043694:484471..487855 | TCONS_00013430-exon-sc0000167-1575043694:484471..487855 | Clytia hemisphaerica | exon |
| TCONS_00013430-exon-sc0000167-1510915933:489504..489714 | TCONS_00013430-exon-sc0000167-1510915933:489504..489714 | Clytia hemisphaerica | exon |
| TCONS_00013430-exon-sc0000167-1510915933:488525..488676 | TCONS_00013430-exon-sc0000167-1510915933:488525..488676 | Clytia hemisphaerica | exon |
| TCONS_00013430-exon-sc0000167-1510915933:484471..487855 | TCONS_00013430-exon-sc0000167-1510915933:484471..487855 | Clytia hemisphaerica | exon |
| TCONS_00013430-exon-sc0000167-1491911889:489504..489714 | TCONS_00013430-exon-sc0000167-1491911889:489504..489714 | Clytia hemisphaerica | exon |
| TCONS_00013430-exon-sc0000167-1491911889:488525..488676 | TCONS_00013430-exon-sc0000167-1491911889:488525..488676 | Clytia hemisphaerica | exon |
| TCONS_00013430-exon-sc0000167-1491911889:484471..487855 | TCONS_00013430-exon-sc0000167-1491911889:484471..487855 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:484471..489714 - |
Blast
BLAST of TCONS_00013430 vs. Swiss-Prot (Human)
Match: CE350 (Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.354e-22 Identity = 66/199 (33.17%), Postives = 111/199 (55.78%), Query Frame = 3
Query: 2895 LRIPLNEKDTREIVNLALQEIQRQNFSMSELERLIVPDSILALETYG-EIDVPSTMLYKTLIFDLTLQLYCELKEFRDIQAKPRPIWLKRPRKTFSKFTRQV----HLDESNSFPDLVKDHVCGCIGLQSGRPSLMKLKRKLPLNLEKKDYVDAVLVDELRQEEGQWVNYDEDELRVKFQLADNILESLLEETVDIINQ 3476
L +P ++ +V+ A +E+ + +L + +P +L + G +I+ S +YK +FDLT +++ E+ F + +P+W+K P + S + R+V +LDE SF + V L+ ++ + +K+D VD +LV EL +EE QWVNYDEDEL VK QLAD I E+L+++T+D++NQ
Sbjct: 2914 LAVPHTAEEVEILVHNAAEELWKWKELGHDLHSISIPTKLLGCASKGLDIESTSKRVYKQAVFDLTKEIFEEI--FAEDPNLNQPVWMK-PCRINSSYFRRVKNPNNLDEIKSF---IASEVLKLFSLKKEPNHKTDWQKMMKFGRKKRDRVDHILVQELHEEEAQWVNYDEDELCVKMQLADGIFETLIKDTIDVLNQ 3106
The following BLAST results are available for this feature:
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