MSTRG.13668.7.p1 (mRNA) -

Overview
NameMSTRG.13668.7.p1
Unique NameMSTRG.13668.7.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000110_pilon:107230..113114+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13668.7.p1 ID=MSTRG.13668.7.p1|Name=MSTRG.13668.7.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5885bp|location=Sequence derived from alignment at sc0000110_pilon:107230..113114+ (Clytia hemisphaerica_ch_hm2_pilon)
agtgtttaaataatataaaaaattagaacataaatttttcaaaacaataa
ccATGAGCTCAAAACAGAGTAAGTATCCAAGTATCTATagttactttaag
ggcagaaagtttcgcgaagtcaaaaagtcgcgaaatttagcgaatttaag
tttcgcgaattatggttttcgcgaattcatataaaatttaccttttttgg
taacaaaaactcataaaacacgcaaaaatttagcaaacagtgaaaaactg
agtagtaaagtttatttttcgcaaaaaaaactttcgtggttttcaggttt
aatttcttacctggcagaaactttcgcgaaaaaggatcaaaatcgtgaaa
gtttctgcccgcgaaagtttctgcccttaaagtaattcgacttttaaaat
acttaattttcattGATCATTCTAGACAGCAGTTTTAAGCACAAGGAAAT
TTGGAATCTAGAATTTCGTAGCTCGCAATTCGCTCATGTGTGCATCGTTC
TTTGGTATACAGACACAGATGTATAGTCTTTCCAATAAAGATCAATTTTC
TATTCCCtataatgaaaaataatgatgATACATATAATTATGCTATacgt
tgtttttgttttttcggaTTTGCGGCCACCAATGCTAAAGCCCTAAAGTA
ATGGACCAATTTCCCATCAAAAAgaaatgatagtcggcctttgatgtgcc
gcatccccagtcaACTACCCTTGCGCATAAACCTTAAAATATTCCGAAAG
CGAGGGCTTCCCACAGCAAAAATCCTCTGGGTTATCTGCATCTGGGtgga
gaaaaattttctaagaatAATTAGGCTCATAGACTCCTTAAGAAGAATTT
CAGAACGAAGCTGACCCCGCATTGCCTCAACaaaaaaaGTTTGTCGgatc
ttagaaaaaaagagtgtagtacaaatttgaattgttttttttttatcatg
atTTTTGAACAGATCTTCCAACACAATGTTCAAGCTCAACAGTCACAATA
ACAACAActaccaaaaatctttttcgtatGTAAATTATTCCAGTGCCTTT
CCCTGTATAGTTTAAATAATTATCATTTGTCAAATGCTTTCCAAAAAATA
AAGCGTACCTGTgattaggctgctggcatccactaacggattgcTGCTCC
TTATATACTACCTGCAGTTGAAAAATCGCTTATTTTCCTTCCAAACAAGA
GTTGTAGCACGCCTTTTAACTgcatttctattatttttttagCTGGAGTG
GGTCAAATTCTAAGCACAGGTATAAATTTTGACTATAatatttaaaagtg
aaaaaatcaggGGACATTTACTTTGACGATGATGCTATACacgatttttt
tagaatttcgaCCGGGACTTAAGTGGGATAAGTGACTATCATTCCTCATC
CTACAAAACCTTTGCTTCAATATTTAATCCCCGGCAGAATTTATGTGTTG
ATACACTATATTGAGCAAAAGCCATACTGAAAACTAAAGAccataatatt
ttatttatgaGTAATACCGGGTGACtcacgaaaaagtataagagtttgga
gggtaactgtgtccgaaaaaaattgaattttaactaaattcttttttcat
ggtaaagaggaaaggcaaacttaaattttgatgtatcattttttaatttt
ggaaaagtagttatcgagatatggaggtataaagtcaaaagtcattataa
aaacagtATCTCGAtaactcttatactttttcgtgggtcacccggtagat
tTCAAATGATTTTCTTGTCGACTTAGATGCTTTCAAATACTCTGTCGGCT
TTGAATTGTTGGCTTCGAGGCATAGTGCTGACAGTTCCATTTTTTCACCA
TGCTTTTGctcattcattttttttaggGTCAGAAAAAGAAGAATCAAGCC
AAGAGAATGCAAAAAATAGTAAAGGTATACTAGTATACCTATATTAACAC
ATTCAATTGTTAAAACTGGTTGAAAACAAAATCTTCTGAACTTCTTTTCT
AAGAACCTACTTTCTCATAGTCTCCTCTAATATAACGAATAAAGTTTGGC
TCAAAAATATGCGAACACCGTTGTACACCGTTcgaaagatattttcaagg
aGGACACTCTAAaggattaatttttttgaaaacttgaaaattgaaaaaga
aaaataaagatgaaaaaaagaagattctTCCGTTTCAAATATCATGACAT
TAATTTTATAAGGATTATTGGAACTTTACAAACTTCGAAAATGTGTTCTA
ATTTTTCGTGTTAGATAAAAAGTTTGAAGTAGCtcattttaactgttttt
ggtcatttttggccgTCTTATGCCCACTTTAAAGACTTATTTTCCAGCTG
AACAATCAACTGACGAAACGCGCAATCTTGTCTGGTTTAAAAACTACAGT
gctttttcaaatcaatcactATGTTTATTATCGATACAGACTTCGCCAAT
AAACTGTCAATCATTAAAAAGCGGTTTTGATTCTTTAAAAATTCATATTA
CTCGTGAAATAGAACTTCTTTTGTTAAATCGACTGATCTCTGAATAGTTG
ACTGGATTGTGCTTTCCATATTAAAGGAAGCGTGTCTTGTtttcaataca
caaatttcctattagcagattcatgtaaaaacgTCACGAAAAAATCAAAG
AGTAAAGTTATGATTGGCTGAGACATGATTACCGCATGCTTTCGAcactt
aaaagaaaaaatatcttaTCTGTTCAGAGCtttacatgttgtttttttta
aataagaatatatttgtaagaatgtccatgatgaaaatggccaaaaaaat
aagaatatgctaagaatatcactatcatggaattttgctactcaagctaa
gaatgctatttttagagcgttttcaattataaattgtcatcAATTacccc
ccaagtaaggctcacttcttttacaaaaatgccattttatgcttgagact
tatgtactaaatgtttaatctagtctgaattaggaacCTAACCTaggaat
gctgtaagaatattttaggatgattttcccaaaaaagttaagaatatcca
tgatgaaacaccattcttataaaaaaagcgtttactcgacgtttttttgT
GACTTTTCTCCCATGAATCTGCTACTGTAATAGGGAATTCGTGTATCCCG
ATCGCCAACAGCGCAACCAGTAGGTTTTGAAACTCGAACTTTCCAGAATC
TAAGTATGTAAAGTCTCATGTAAAAGTGATTTCAGTTTTTCGATTGACTC
TTTTGCAGGCCCTAACAAGGATCGCATTTATTTGAGACTAtacatgaaaa
tcaaaaaaattaaaaaaatcattttgtaaaaagctgtataatatttgaaa
aagctcactttgttttgtttttcttttcctgtgTATAGGGTAAGTCAATT
AATGATTTTGTTGCGATACCTACATACGTAAAGCTTTAGCAAGGGTTGCC
ACTAGCAATTCATTGGTTTATTTTGTATCCAAACGCTAAAAGGACTCTAC
TCTTGAGCTAAGGATTGCCGCCAAAATGTCAGTAATACTTACACAAGTGT
CATCCAATTTTGTTCTAAAACATCATCAAAATGACAGGGTGTTTAGAACT
TTAAATTGTCGTATTTCCATACGTTTTTGAGTATGAGACTTGTTGTAGTA
CtttttttGCTCGGAATTTCATACACTATCCGATGGTTATCCACCGTTTT
AGTTGAATACGAAAGAATTTTGTGTGGTTGTGTtctagaaaagatgtcac
ggatactaccgtcaactgctctaacttgggacaattggtcgaaacatggt
actggttgatatctggtctgtatttttcacttactgttaaatctctttga
caacaaatttgttttggtaactccaccaagtttatcaatcatacttatTC
GTTCCTCTTAGAATGCACAGACACTCGTGTGTGTTCCAcaacggattttt
ttcatatttcgatttaaaagcctactcggtgcgaaagaaaaatcgtgtat
tttttaatacgccgtgcattaactcaaatcaaatgactttggaggttcgg
tgaaatgctggccgaattgccgtcccatgttttgtcagatagtcccaagt
tagagcagttgacggtgaGTGTTTTCCCTCTAGTATAAATACACAACACT
TAATTTATTTGATGAACTATTCTTTTCAGTTGAGGTAGCCACACAAGGAG
AAGACAGGATATTGAATACATTGAAAAAGAGCGAAAAGGAGAAATTGCAA
GCTTGTTTGGATAAAGAAGGAAGTCATCTAAAAAACTGGAGGCAAGTAGT
GgataaaattttcgaaaatgacGAAGATAATAGTAAAGCAATTGAAATAA
AAGCTACTATTGAAAACATACGGTTTGGTGGGGGTGCTGCTGGAGGGTTT
TTGAAGAAGCTAGAACAGAAGTTGCCTGATCTTACGGTTGGTACTCTAAA
TGAAATATGTAAAGAGGAGGGCAGGAATGATATTGTTAAAGATTTGAAAC
GTTTTAAAGAAcagcaaaaattgtttgaagttttggaTGCAGACGATATA
AGTAAGTTGAATGTTAAAATGGATGATGATGAATTTTGTTTGATTGTAGC
GGAATCCGAAATATTGGAGAAAGTGGCACACCACTTCGGCATCAAGGGTA
CTTTGTTCTCTCAACATGAAAAAGATAATATTAAAGCCATTGGTCCGGGA
AAATTTCAAAGCTGCACCGTGAGTTTATTGGATATTTTGAATAGAGAAAG
ATCAGATATGACTGTAAAAGAATTAGCTAAAATTTGTGAAGCGTTACGAA
TCAACGATGCAAAAGATGCTTTGCTTAAATTGCTTCATAAATAACATACT
GTTTATGATTTTATGTGTTTATAGTACATTAGTATTTCTTACATGCACCC
ACACTGAGATAACAAAATTTGTATACCTCTGTTAGGGATAAcgtaaaata
attttgaaatacaccaaaccgtatacacgcttttttttataaagaatatC
CTCtctaagaatatcagggtgaaaattggccaaatcgtaagaatacccta
agaatattATAGAGcgagtttcacagaatttgataagaatacaatcattt
tgtatttggttaacagaaaaaactgcttctcTTGTTAGACTTAAGATTTA
AACTTTGATGTAGAAGTGTAATTTTTGCTCCTAATGTGCACTCAAAAGTC
CCAAACTGTCAAATTGATCGCAGTGATGCAGAAAAAGTTTTAGTGAAATT
GCTTTAGCGAATAactatttatgatttttagtgCTGTCCTCATAACTCGg
acgaatgtctccttaactcgaacaagtcgTCTTATCccttaaagttttta
ttttacataagtgttcccgtttcatatcagacacatatcatgacagtgtc
tgcctattgttatattatgctgatataaacaagaaatgtttttctcttcc
tctttctgatcatcTTGTTCCACATGTCATCCGtgccaatccaatgtgaa
aacgcttgtaaattaaaactgATGATTAAGCAAGtgatatcactcttatc
taaaaacaaaacctttaacatcccTTACCTGTCTTAATATTTGCGTCTCC
CTCTTACGGGTCCGAGTTTTGAAGACTTCACTGTGATacacataaatatt
ttttacatgcaccactttatatttagcttttaccaattgttattttatga
atttttatcattttgtcagccaaagaaaaatgtttgacatttttatgatt
tcttttttagggcgggggtgggggttggtaggtggggtaaaatttttttt
ttttttttttttttttttttttttttttttttttttttttttttttttat
tttttttttttttttaactgaaaaaggaaactttt

Coding sequence (CDS) from alignment at sc0000110_pilon:107230..113114+

>MSTRG.13668.7.p1 ID=MSTRG.13668.7.p1|Name=MSTRG.13668.7.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2187bp|location=Sequence derived from alignment at sc0000110_pilon:107230..113114+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGCTCAAAACAGAgGTCAGAAAAAGAAGAATCAAGCCAAGAGAATGC
AAAAAATAGTAAAGTTGAGGTAGCCACACAAGGAGAAGACAGGATATTGA
ATACATTGAAAAAGAGCGAAAAGGAGAAATTGCAAGCTTGTTTGGATAAA
GAAGGAAGTCATCTAAAAAACTGGAGGCAAGTAGTGgataaaattttcga
aaatgacGAAGATAATAGTAAAGCAATTGAAATAAAAGCTACTATTGAAA
ACATACGGTTTGGTGGGGGTGCTGCTGGAGGGTTTTTGAAGAAGCTAGAA
CAGAAGTTGCCTGATCTTACGGTTGGTACTCTAAATGAAATATGTAAAGA
GGAGGGCAGGAATGATATTGTTAAAGATTTGAAACGTTTTAAAGAAcagc
aaaaattgtttgaagttttggaTGCAGACGATATAAGTAAGTTGAATGTT
AAAATGGATGATGATGAATTTTGTTTGATTGTAGCGGAATCCGAAATATT
GGAGAAAGTGGCACACCACTTCGGCATCAAGGGTACTTTGTTCTCTCAAC
ATGAAAAAGATAATATTAAAGCCATTGGTCCGGGAAAATTTCAAAGCTGC
ACCGTGAGTTTATTGGATATTTTGAATAGAGAAAGATCAGATATGACTGT
AAAAGAATTAGCTAAAATTTGTGAAGCGTTACGAATCAACGATGCAAAAG
ATGCTTTGCTTAAATTGCTTCATAAATAAATGAGCTCAAAACAGAgGTCA
GAAAAAGAAGAATCAAGCCAAGAGAATGCAAAAAATAGTAAAGTTGAGGT
AGCCACACAAGGAGAAGACAGGATATTGAATACATTGAAAAAGAGCGAAA
AGGAGAAATTGCAAGCTTGTTTGGATAAAGAAGGAAGTCATCTAAAAAAC
TGGAGGCAAGTAGTGgataaaattttcgaaaatgacGAAGATAATAGTAA
AGCAATTGAAATAAAAGCTACTATTGAAAACATACGGTTTGGTGGGGGTG
CTGCTGGAGGGTTTTTGAAGAAGCTAGAACAGAAGTTGCCTGATCTTACG
GTTGGTACTCTAAATGAAATATGTAAAGAGGAGGGCAGGAATGATATTGT
TAAAGATTTGAAACGTTTTAAAGAAcagcaaaaattgtttgaagttttgg
aTGCAGACGATATAAGTAAGTTGAATGTTAAAATGGATGATGATGAATTT
TGTTTGATTGTAGCGGAATCCGAAATATTGGAGAAAGTGGCACACCACTT
CGGCATCAAGGGTACTTTGTTCTCTCAACATGAAAAAGATAATATTAAAG
CCATTGGTCCGGGAAAATTTCAAAGCTGCACCGTGAGTTTATTGGATATT
TTGAATAGAGAAAGATCAGATATGACTGTAAAAGAATTAGCTAAAATTTG
TGAAGCGTTACGAATCAACGATGCAAAAGATGCTTTGCTTAAATTGCTTC
ATAAATAAATGAGCTCAAAACAGAgGTCAGAAAAAGAAGAATCAAGCCAA
GAGAATGCAAAAAATAGTAAAGTTGAGGTAGCCACACAAGGAGAAGACAG
GATATTGAATACATTGAAAAAGAGCGAAAAGGAGAAATTGCAAGCTTGTT
TGGATAAAGAAGGAAGTCATCTAAAAAACTGGAGGCAAGTAGTGgataaa
attttcgaaaatgacGAAGATAATAGTAAAGCAATTGAAATAAAAGCTAC
TATTGAAAACATACGGTTTGGTGGGGGTGCTGCTGGAGGGTTTTTGAAGA
AGCTAGAACAGAAGTTGCCTGATCTTACGGTTGGTACTCTAAATGAAATA
TGTAAAGAGGAGGGCAGGAATGATATTGTTAAAGATTTGAAACGTTTTAA
AGAAcagcaaaaattgtttgaagttttggaTGCAGACGATATAAGTAAGT
TGAATGTTAAAATGGATGATGATGAATTTTGTTTGATTGTAGCGGAATCC
GAAATATTGGAGAAAGTGGCACACCACTTCGGCATCAAGGGTACTTTGTT
CTCTCAACATGAAAAAGATAATATTAAAGCCATTGGTCCGGGAAAATTTC
AAAGCTGCACCGTGAGTTTATTGGATATTTTGAATAGAGAAAGATCAGAT
ATGACTGTAAAAGAATTAGCTAAAATTTGTGAAGCGTTACGAATCAACGA
TGCAAAAGATGCTTTGCTTAAATTGCTTCATAAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13668MSTRG.13668Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13668.7.p1MSTRG.13668.7.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13668.7.p1.exon1MSTRG.13668.7.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13668.7.p1.exon2MSTRG.13668.7.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13668.7.p1.exon3MSTRG.13668.7.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000110_pilongenomesc0000110_pilon:107230..113114 +