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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013439 ID=TCONS_00013439|Name=TCONS_00013439|organism=Clytia hemisphaerica|type=transcript|length=2341bp
tactgatacagtctgctagacattaatatggtaatatttgctcttcatct
ttgattttttctacagtgattagattgacacatgcgcgataaaatttcta
ctattggtcttcagaggttaaaaATTACCAATTTATGTTAATACAAGTCC
ACCCTTTCTGATAGCTCCTGTTTGGTACACATCCTCCTAAAGGAAAAAAA
GCAGAATTCTACTTTTTTCCTCTCTTCTCTTTACGCAACAATGCAACGAC
GTCAAAAATAGGATTTTAACGTCAATTCACGTTTGCTAGGCCTTATAGAT
TAAAAACGCCGTGGATCATGCCCTTTCGTGTCCGAAAGGAGGTTTCATCC
ACCAACGGCGAAACCACTTAGCCAACCTCCTTTTACAAGTTCACACCGGC
GTCTCCATCGAACCCCATCTACAACCTTTAATGGAGAATCACTACCAAAC
AACTCTAACAAAATAGACGAAGCCCGACTTGACATGTCAGCCAGAAGTTT
TTGGCAAAGGGCACAACTTGCATTCTTTGACGTAAGGATCACAAATCCGT
TCGCAAAAAGTCACTTTAACCAGAAACTTCAAAGCACATTCCGATGGAAC
GAACAAGAGAAAAAGTGAAAGTACAACAACCGAATCATCACAGTCGAGCA
TGGCTCGTCCAGCCCGTTCGTTATGTCTCCGTACGGAGGACAAGGAAGAG
AAACAGAGATGATCATCAATTGCAAAGAAGCTCTCAgacaaaaaagaatt
tagtATCATGTTGAATTGGTTGAGAACTAAACTCTCATATTGCTTGCTAC
GATCATCTATCCTATGCTTACGTGGATCGAGAACTGTTAGAAAATTGAGC
GTTGATATGAATGAGATTGAACTTCGTGAAACTACTAGGAGAAatcttta
gtcaattttctttaaagattcgTAGCTTTTGAGATTCTTTTCACACTTTT
GCATTCTTATCGTTAGCCCTTTATTGCACCCGGCGTGACCGCAAGGTTAT
GCCACCATCCTTTCGATGTGGAATTGTGATACTTTTCAGATTTATTTGCC
TCTTATTATTCGATTTAAACTAATTTAGTCTAATGAGATATTGTATATCA
CTTGGTCCAAATATATtgtatttacacttttttttatgacttcaaaatcg
atatttttgtaaacttgaaacaaattttagtataaagtttttgactgaag
atcgtaacgaaaagttgcgtgaaactttgagtatcacACAATTCTGATCA
CGACTTCAATTTATCgtgatgttcttattaaaaagaacaaaaacaaaaac
gaatGGATGTTATTCATTTTGGTCCAACCAGAAACTTAGATAGCCATAGA
TATAACGAACCTCTTCTACTctacaaaagaaaatattcCAGTGACGTCGA
GATTTCACACTTAAGCTGATTAACTAAATCGAAGCAGTAATGAGACGAAT
GCGCTGGAAAGCAATCTTCTCTGATCCTGACAAGGCAATACCGACCGAGA
ATTACGGCCTGAAAACGACATTTTCGTCACAGACGGAAATTTCTCCTCCA
GCCTTTCGAatgattcaaaattgaaatttggcaTATGCCTGATTTCCTGG
CTTTCCccaatttgatcaattataacAAAGTTAGATAGATAATTGGCGTA
AGGCATGAAACTTGAAGTAATGTACTtttttttacagcaaaattttgaaa
taaatttataacaaagttatttatttcttaactgccaacagggggggggg
tcagtgtactagaaggcggcatgtatgtgtactacaaggtatttttcaaa
acttgacacccacccacccgTGAAGTACACTatactacatggaaaaatcc
caaaaccaccccataccccctattTACTACCAGGTATAGTacctgtaaaa
aaaacaaaaccaccccatacccccatttactaccgggtactacctggaaa
aaacattttttccaaaaatcaggaaatcggggaaacttttttcagaaaat
cagcaaatcgggaaaacttttttccaaaaatcggaaaaacaggaaaattt
ttaaaaaaaatccaaaatgcgtgagaaatcaaacttttcaaaaattgcgt
gagaccatgtggaaatgcTTGAGTCTCACACTCAATGCGTAAGAGTTGGC
ACCTTTGATGTTCGAATGTTTGAATTAgaatgttcgaatgtttacattga
ttCTAAACCTTCATTTTAGTGGGATCTGGTAGGATTTCaattaattcaaa
aaagtttggaagaatgatcttggacaaacttggcttgatcaatttataat
agaacaactttacatttctattttagcaaaTAATTTCTGAG Run BLAST on NCBI transcript from alignment at sc0000167:119163..121503 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013439 ID=TCONS_00013439|Name=TCONS_00013439|organism=Clytia hemisphaerica|type=transcript|length=2341bp|location=Sequence derived from alignment at sc0000167:119163..121503 (Clytia hemisphaerica)
CTCAGAAATTAtttgctaaaatagaaatgtaaagttgttctattataaat
tgatcaagccaagtttgtccaagatcattcttccaaacttttttgaatta
attGAAATCCTACCAGATCCCACTAAAATGAAGGTTTAGaatcaatgtaa
acattcgaacattcTAATTCAAACATTCGAACATCAAAGGTGCCAACTCT
TACGCATTGAGTGTGAGACTCAAgcatttccacatggtctcacgcaattt
ttgaaaagtttgatttctcacgcattttggattttttttaaaaattttcc
tgtttttccgatttttggaaaaaagttttcccgatttgctgattttctga
aaaaagtttccccgatttcctgatttttggaaaaaatgttttttccaggt
agtacccggtagtaaatgggggtatggggtggttttgttttttttacagg
tACTATACCTGGTAGTAaatagggggtatggggtggttttgggatttttc
catgtagtatAGTGTACTTCAcgggtgggtgggtgtcaagttttgaaaaa
taccttgtagtacacatacatgccgccttctagtacactgaccccccccc
ctgttggcagttaagaaataaataactttgttataaatttatttcaaaat
tttgctgtaaaaaaaAGTACATTACTTCAAGTTTCATGCCTTACGCCAAT
TATCTATCTAACTTTgttataattgatcaaattggGGAAAGCCAGGAAAT
CAGGCATAtgccaaatttcaattttgaatcatTCGAAAGGCTGGAGGAGA
AATTTCCGTCTGTGACGAAAATGTCGTTTTCAGGCCGTAATTCTCGGTCG
GTATTGCCTTGTCAGGATCAGAGAAGATTGCTTTCCAGCGCATTCGTCTC
ATTACTGCTTCGATTTAGTTAATCAGCTTAAGTGTGAAATCTCGACGTCA
CTGgaatattttcttttgtagAGTAGAAGAGGTTCGTTATATCTATGGCT
ATCTAAGTTTCTGGTTGGACCAAAATGAATAACATCCattcgtttttgtt
tttgttctttttaataagaacatcacGATAAATTGAAGTCGTGATCAGAA
TTGTgtgatactcaaagtttcacgcaacttttcgttacgatcttcagtca
aaaactttatactaaaatttgtttcaagtttacaaaaatatcgattttga
agtcataaaaaaaagtgtaaatacaATATATTTGGACCAAGTGATATACA
ATATCTCATTAGACTAAATTAGTTTAAATCGAATAATAAGAGGCAAATAA
ATCTGAAAAGTATCACAATTCCACATCGAAAGGATGGTGGCATAACCTTG
CGGTCACGCCGGGTGCAATAAAGGGCTAACGATAAGAATGCAAAAGTGTG
AAAAGAATCTCAAAAGCTAcgaatctttaaagaaaattgactaaagatTT
CTCCTAGTAGTTTCACGAAGTTCAATCTCATTCATATCAACGCTCAATTT
TCTAACAGTTCTCGATCCACGTAAGCATAGGATAGATGATCGTAGCAAGC
AATATGAGAGTTTAGTTCTCAACCAATTCAACATGATactaaattctttt
ttgtcTGAGAGCTTCTTTGCAATTGATGATCATCTCTGTTTCTCTTCCTT
GTCCTCCGTACGGAGACATAACGAACGGGCTGGACGAGCCATGCTCGACT
GTGATGATTCGGTTGTTGTACTTTCACTTTTTCTCTTGTTCGTTCCATCG
GAATGTGCTTTGAAGTTTCTGGTTAAAGTGACTTTTTGCGAACGGATTTG
TGATCCTTACGTCAAAGAATGCAAGTTGTGCCCTTTGCCAAAAACTTCTG
GCTGACATGTCAAGTCGGGCTTCGTCTATTTTGTTAGAGTTGTTTGGTAG
TGATTCTCCATTAAAGGTTGTAGATGGGGTTCGATGGAGACGCCGGTGTG
AACTTGTAAAAGGAGGTTGGCTAAGTGGTTTCGCCGTTGGTGGATGAAAC
CTCCTTTCGGACACGAAAGGGCATGATCCACGGCGTTTTTAATCTATAAG
GCCTAGCAAACGTGAATTGACGTTAAAATCCTATTTTTGACGTCGTTGCA
TTGTTGCGTAAAGAGAAGAGAGGAAAAAAGTAGAATTCTGCTTTTTTTCC
TTTAGGAGGATGTGTACCAAACAGGAGCTATCAGAAAGGGTGGACTTGTA
TTAACATAAATTGGTAATttttaacctctgaagaccaatagtagaaattt
tatcgcgcatgtgtcaatctaatcactgtagaaaaaatcaaagatgaaga
gcaaatattaccatattaatgtctagcagactgtatcagta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013439-exon-sc0000167-1491911889:119163..121503 | TCONS_00013439-exon-sc0000167-1491911889:119163..121503 | Clytia hemisphaerica | exon |
| TCONS_00013439-exon-sc0000167-1510915933:119163..121503 | TCONS_00013439-exon-sc0000167-1510915933:119163..121503 | Clytia hemisphaerica | exon |
| TCONS_00013439-exon-sc0000167-1575043694:119163..121503 | TCONS_00013439-exon-sc0000167-1575043694:119163..121503 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:119163..121503 . |
Blast
The following BLAST results are available for this feature:
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