TCONS_00013434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013434
Unique NameTCONS_00013434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013434 ID=TCONS_00013434|Name=TCONS_00013434|organism=Clytia hemisphaerica|type=transcript|length=305bp
CGTTTATATATATCACAAAAAGTAATGGACCAAGAACACTTCACTGTGGG
ACTCCTTGGATAGTTTGCCATTTACCTTGACATACTGATATCGATCCGAC
AGAAAAGATTTGATCCAGTCTAACGTGAATCCTTTGATACCGTTCGTCTG
GTCCCAGTGACTTGTTAGGGTTCACGcctttcagttcttttcggaCCATT
TCAATGGTGAAATCGAAAGTTACATATGAGTCTGTAaaatttagatttag
atttagatttcTCAATCAGGAGGCTCAATGTGGTTTCTCAAGATAAAAAG
CATCG
Run BLAST on NCBI

transcript from alignment at sc0000167:89179..89483

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013434 ID=TCONS_00013434|Name=TCONS_00013434|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0000167:89179..89483 (Clytia hemisphaerica)
CGATGCTTTTTATCTTGAGAAACCACATTGAGCCTCCTGATTGAgaaatc
taaatctaaatctaaatttTACAGACTCATATGTAACTTTCGATTTCACC
ATTGAAATGGtccgaaaagaactgaaaggCGTGAACCCTAACAAGTCACT
GGGACCAGACGAACGGTATCAAAGGATTCACGTTAGACTGGATCAAATCT
TTTCTGTCGGATCGATATCAGTATGTCAAGGTAAATGGCAAACTATCCAA
GGAGTCCCACAGTGAAGTGTTCTTGGTCCATTACTTTTTGTGATATATAT
AAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007504XLOC_007504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013434-exon-sc0000167-1491911889:89179..89483TCONS_00013434-exon-sc0000167-1491911889:89179..89483Clytia hemisphaericaexon
TCONS_00013434-exon-sc0000167-1510915933:89179..89483TCONS_00013434-exon-sc0000167-1510915933:89179..89483Clytia hemisphaericaexon
TCONS_00013434-exon-sc0000167-1575043694:89179..89483TCONS_00013434-exon-sc0000167-1575043694:89179..89483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:89179..89483 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.738539	0	0.418106	0	0.995961	0	0	0	0.311176	0	0	1.22966	1.02241	1.02019	1.2581	2.0252	1.94046	0.568261	0	0.410767	0.357031	0	0	1.15479	0.792937	0.707677	0	0.540382	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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