MSTRG.16649.1.p1 (mRNA) -

Overview


Name	MSTRG.16649.1.p1
Unique Name	MSTRG.16649.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000159_pilon:466456..468278-
coding sequence from alignment at sc0000159_pilon:466456..468278-

mRNA from alignment at sc0000159_pilon:466456..468278-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.16649.1.p1 ID=MSTRG.16649.1.p1|Name=MSTRG.16649.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1823bp|location=Sequence derived from alignment at sc0000159_pilon:466456..468278- (Clytia hemisphaerica_ch_hm2_pilon)
TAGGGAAGTCAATCCAAAGAAGAACACCAAGATGCATATTATGTGGCTTC
TTGTCCACCCCTTACTCATTCTAAACCTACTCAAAGGATCTTTTGGTAAG
AGCCTCGACCTCATTGGTAAACACAAGAAGACCACTCTAATACCATACCA
TACCATAAAAACACCAAAGCTTCAACAATGCTTCTCGATATGCCATTATA
GTGAGAAATGTCGTGTAATGGAAACGACCCATTCAAATTCGTTCAATTGT
AAATTCTTCGATGTTACATTGCAAGCCTCTGATATTACTGGGCTTGATCT
TAACACAAATATTTATGCTGAAACACGCAACTGTCAAGATTTGTACAATA
TCGGAGTACGGGCATCAGGAGATTACCATCTCAATATTTTTGGTGATGGA
TATGAATATCCATTGTTTTGTCATTTTGATGCAGATGGAGGATGGATCGT
CATACAAAGACACATTGATAATGAATTCTCTTTCCATCGGCAATGGGACG
TATACAAAGAAGGATTTGGTGACTCTAAGGGTACTCTTTCTTTTCTAATT
CACTTCAAACTAGATAAGGTTTTAATGAGGGTAATGCATAATGTTGTGAT
CCTCTCGTGCTAAGCAAAATGAAATTACACTTTCTTTTATAAGGAAAAAA
AAAATTTTTCTTAAGGTTTTGGCAATTTTAGCTCCAAATAGGTCCTGCTA
TCATGCTTTCGCTTTTAGGGAAAAGTTGGAGCATGTTTAGAGATAACAAC
CAACTTCACCCTTCCTTAGTTAATAATTTGCATAAAATTCAGCTCAGGCT
TATTCTTAAATTGTACTTATTTTTTTGACGTTTGAGTGTAAGATGGAACA
AGATAATTATATCTAAATTTTCTTATTCATAGGGAGTTTCTGGTTAGGTT
TAGAACTAATCCATAAAATCACCCGAGATCAATCTCAACAAGTCAAGATT
GAAGCAGTATCTTTTAGTGGCGATTTTGCTATGGCGAAGTATGGTGCATT
TTCAGTCGCAAGCGAAGATGAAAACTATCTTTTATCAGTTGATGATTTCG
ATGCAATCGCAAGTAACAAAATGGATATTTTATATTATTCCATTGGAATG
GAATTCAGCACCTGGGAAAGAGATCACGATAAACATGAAAATAATTGTGC
AAATGGGTGGAATAGTAGAGGTGGCTGGTGGTACAATAAATGTGGGGATT
TCATGCCAAATGCTCAGTGGTATCCAGAAGAACAAGCATACAAACCGGTT
GGCGATGGATGGAAGGGTATGAGGTATGGACCCATCACTGAATCGTGGAC
TTTGAAATCAACACTGATATTGATCAAACCAAAGGACAATTAATCGAACT
GTATTGTTCAAATTCATGAAATTATCTCTGTTCAAAAAGAGATGCAGCTT
GCCTTTTGCCGAAAAAGAAAAGCGAAAGAGACTTGGCTCTTTTCGATTGA
CGGTAGATTTTGGTCTCAGTTGTACTTTGGCCAAAATCTCGACTTTAAAA
TTATTTGATACTAATCAAAAATCTGGACGGAAATATTTACAGCAGACCGA
CACCAAAGGCATGTCTGTCAACGAAACTTGCTTGGATATTATGTAAAAAT
AACATTTCATAATATTATTGCATAATGCAATAATATTATGAAATGTTATT
TATTTATTTCAATGTCATCAAACAGTTCATTTCCAGTTTGTTTTTCTTTA
TCAAAGTTACATTTTACACGACCTGTTTTCGTGCACATTGTAAATACCCA
TCCATGATGAAATAAAGTTTGTTGTAATATAACACAGGTTTAAATTTAAC
CAAGAATATTTAGAGCGTTTTTT

Coding sequence (CDS) from alignment at sc0000159_pilon:466456..468278-

>MSTRG.16649.1.p1 ID=MSTRG.16649.1.p1|Name=MSTRG.16649.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1980bp|location=Sequence derived from alignment at sc0000159_pilon:466456..468278- (Clytia hemisphaerica_ch_hm2_pilon)
GGAGTTTCTGGTTAGGTTTAGAACTAATCCATAAAATCACCCGAGATCAA
TCTCAACAAGTCAAGATTGAAGCAGTATCTTTTAGTGGCGATTTTGCTAT
GGCGAAGTATGGTGCATTTTCAGTCGCAAGCGAAGATGAAAACTATCTTT
TATCAGTTGATGATTTCGATGCAATCGCAAGTAACAAAATGGATATTTTA
TATTATTCCATTGGAATGGAATTCAGCACCTGGGAAAGAGATCACGATAA
ACATGAAAATAATTGTGCAAATGGGTGGAATAGTAGAGGTGGCTGGTGGT
ACAATAAATGTGGGGATTTCATGCCAAATGCTCAGTGGTATCCAGAAGAA
CAAGCATACAAACCGGTTGGCGATGGATGGAAGGGTATGAGGTATGGACC
CATCACTGAATCGTGGACTTTGAAATCAACACTGATATTGATCAAACCAA
AGGACAATTAAAGGGAAGTCAATCCAAAGAAGAACACCAAGATGCATATT
ATGTGGCTTCTTGTCCACCCCTTACTCATTCTAAACCTACTCAAAGGATC
TTTTGGTAAGAGCCTCGACCTCATTGGTAAACACAAGAAGACCACTCTAA
TACCATACCATACCATAAAAACACCAAAGCTTCAACAATGCTTCTCGATA
TGCCATTATAGTGAGAAATGTCGTGTAATGGAAACGACCCATTCAAATTC
GTTCAATTGTAAATTCTTCGATGTTACATTGCAAGCCTCTGATATTACTG
GGCTTGATCTTAACACAAATATTTATGCTGAAACACGCAACTGTCAAGAT
TTGTACAATATCGGAGTACGGGCATCAGGAGATTACCATCTCAATATTTT
TGGTGATGGATATGAATATCCATTGTTTTGTCATTTTGATGCAGATGGAG
GATGGATCGTCATACAAAGACACATTGATAATGAATTCTCTTTCCATCGG
CAATGGGACGTATACAAAGAAGGATTTGGTGACTCTAAGGGGAGTTTCTG
GTTAGGTTTAGAACTAATCCATAAAATCACCCGAGATCAATCTCAACAAG
TCAAGATTGAAGCAGTATCTTTTAGTGGCGATTTTGCTATGGCGAAGTAT
GGTGCATTTTCAGTCGCAAGCGAAGATGAAAACTATCTTTTATCAGTTGA
TGATTTCGATGCAATCGCAAGTAACAAAATGGATATTTTATATTATTCCA
TTGGAATGGAATTCAGCACCTGGGAAAGAGATCACGATAAACATGAAAAT
AATTGTGCAAATGGGTGGAATAGTAGAGGTGGCTGGTGGTACAATAAATG
TGGGGATTTCATGCCAAATGCTCAGTGGTATCCAGAAGAACAAGCATACA
AACCGGTTGGCGATGGATGGAAGGGTATGAGGTATGGACCCATCACTGAA
TCGTGGACTTTGAAATCAACACTGATATTGATCAAACCAAAGGACAATTA
AAGGGAAGTCAATCCAAAGAAGAACACCAAGATGCATATTATGTGGCTTC
TTGTCCACCCCTTACTCATTCTAAACCTACTCAAAGGATCTTTTGGTAAG
AGCCTCGACCTCATTGGTAAACACAAGAAGACCACTCTAATACCATACCA
TACCATAAAAACACCAAAGCTTCAACAATGCTTCTCGATATGCCATTATA
GTGAGAAATGTCGTGTAATGGAAACGACCCATTCAAATTCGTTCAATTGT
AAATTCTTCGATGTTACATTGCAAGCCTCTGATATTACTGGGCTTGATCT
TAACACAAATATTTATGCTGAAACACGCAACTGTCAAGATTTGTACAATA
TCGGAGTACGGGCATCAGGAGATTACCATCTCAATATTTTTGGTGATGGA
TATGAATATCCATTGTTTTGTCATTTTGATGCAGATGGAGGATGGATCGT
CATACAAAGACACATTGATAATGAATTCTCTTTCCATCGGCAATGGGACG
TATACAAAGAAGGATTTGGTGACTCTAAGG

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.16649	MSTRG.16649	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.16649.1.p1.exon2	MSTRG.16649.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.16649.1.p1.exon1	MSTRG.16649.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.16649.1.p1	MSTRG.16649.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000159_pilon	genome	sc0000159_pilon:466456..468278 -

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MSTRG.16649.1.p1 (mRNA) -