XLOC_012657 (gene) - C. hemisphaerica

Overview
NameXLOC_012657
Unique NameXLOC_012657
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000427:245027..251251+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012657 ID=XLOC_012657|Name=XLOC_012657|organism=Clytia hemisphaerica|type=gene|length=6225bp|location=Sequence derived from alignment at sc0000427:245027..251251+ (Clytia hemisphaerica)
tagacACAAAACTACTAAAAAAATGATTCATTAGATTTTTAATAATATTA TACAAAGGATGTTGGTGATGTGGAACTTTGTTGTTTATCATTTCAACCGA TTGTATAGAAGATTTCCTGTCAAGAAGTTTGTTATTTTTGCTGTCTGTAT ATTACTTGGGTATAAGATTGTGACTAAATCATATCATAGATACACACATA ATGTATGGGTAGAAGAAAGAAAGACTCTTATTGAACGGTAAGTTTAAGAC ACCTTTTCTTCCTTTTGGAATGTCCGGATCCACCATTCTCATTGGACTAT gccaattttttacaattttgatataaattatataaataaaatGGTTCATA CCATGGTATACCATCATGGCTTAGTCATTgtgtgattttggaaaaatcca TACCGAAATTCCCAAATGTGAAATACTTATCCCGAGACTTCAAAGCTCTT AAAAAAtcacaaactgaaaattttaaaaatcacacgCCGACAGAAAATTT CTGTGCGGTTACAGTATGATGGTTTTTACACGCGTGTGCTTTTTTAATTG GTTTATACATTTTATTCTTGGATTAAATTACCTCTAGTGGAGGGAAACTT TAGAGAATTTTCTTTTACATTGTGAATTGACATTGCATTATGGATCTTGT TCTACCCGCCACATTGAAtaattatttcttattttctgACTGCCCCGAAG GGTGCAAAGTACAGCATAGTACTTGAAATTTTGTTCGGTatgaaaaaata tgttccacgcagaaatttgttttaaatttaatcaatGCCGCTTTCGTAAA GCATTGAAGTATTCAgtaatttgatcaattattttTAGATATGAAGCAGA TAAGAGCAATTTTGTGAATCAAAATGCAGCGTGTGCCATTCCAAGGTTGA ATCCTTTCAGTAAAGAAGTTATTCATATGATGCACAAGACTTGGGAGAAA TGTTCTCTCGTTGAATATGGTGAGCATAAAATATCATCTACAGTGGAGGT TCCAGAACtcaacacgcacggggaacacaaatttgtttttccatCATAGA AATCGTATAATCATAAATGGCTTCCCCAAAATAAAATAGGGTTCTTCCGC CCTGTTCCGCCTAAAAACAAAGTGTTAAAAACAGTTAAACAAATGAAAAG TTCAAATAATAAGTTAATTTTTAGAATATAAAAGTTTGTTTCAGTTagtg aaatttcaagttatagagtaaggtttataaggtattgttaactgaaggga ccataaaacttgttcaagttgggatgagctggagtttttttaagatactt caataattggtcatttgaagtgatagagatgacgcgttctttagaaaaag aatgagattgtttttattacatcttaacgaccaaccaaatcacataagag cttgtaaaaactccagcttgtcccttcAAGTTAAGGATACATTCGAGATT TAGATTTTCGAGTTGTATTATATTTTGATAGAATAATGGAATCTTACGGC AATTTAAATTCACGGAGATGATACCTTCATTATTTTGTGTCTCTTTATTA ATGCCTAACTATGTGTGTTTGCCACTAAATTATCAGCTcgcttgaatatt tttcaatatcaaaTTTTTCGTGTGAGAATGAGGTCGTTTAAAATTCATGC GTTACAGTAATGATGGTGCTATGTAGTAACACAATAATCGTAAGGGGACA ATATCAGtttatttccattattttttgcttgttttgccttgtctgaatta gtcgtctatcTGTATATTCGCGCTGAATACCTAAACCCAATAAGACAGTT ATATTTACCGGATATTATTGTGTGGATATTACACTAAATTAAATTCTTAT GATAAAATTATTACCTTCTAGGTCAAATCGAGGACGGAGTATTTGTGGTA GATGGGAAAAAGAATCCCTTCATCCTTACCGTATACATCCAGTACATCAG ACGTGCTCCGAAGAGAGGGGAGATCAGTAACGATTTTGCTGTCTCTTAct ctgaaaaaattttcttgaaaaaagaaaatggtaGGTTCGAAGATTTTCTT TATAGTAGGGCCTCTCTCTTCTGTTCTGGTGCTTTCATATAGAAATTCAT TTTAATTAGGGTCAGATTTCTCGTATTTTGACCAACATAATTACTATATT AACACAAAGCCCATATTGTTTGAATCTTTTCAGCATTTCCCTCTGTTTCA GGCGTCTCTTACTCTACAGTAGCTTTGATTACAATTGATAGGGATTTTCG CGCCTGTTCCGTGAAAGCTACTTTTTTTGATATACTGTATATTAATAGTT GTTTATATGCCagtgtaaattttttattttctgtcaTTCCTTTAAACAGG GAAATTTTCACTGACATTGACAGAGGATCACATCAGAGTAGGAATGGTCA TCGATAAAACAAGAAATCAACTTCATGTCGAGTTCCAATCCCACGTGACA AAAACACCAGGACGCTTAAATCATTTGAAGAAATTGAAAGGTAAAGGGTG TTCGTTTTTACCGAGTTGTTGCTAAAATTTAACACTCCAATTTATGgcac aattttttaaatcactttttttataaggactttCATGTCTGGTATTTTTA AGCAGAGATTCAGACCTCGCTAAGACACCGTTGAACAGGCTTCAACGTAG TTTTCTTCTGATCAGATTTTTCTCCAGTCCACAAGCTACAAATCAACGCT AGGTTTCCGATCCATTTTGTGCCGAAATTTGATTGAACGTATTGTCTTCA AAGACTTTCTTTTCGCTACCAGGCCTTTTTTTTAAAAGGAGCTTTGAATT AAGATTCATTCTGAGAAAACTACAAACGTTACGAATCAAAACTTTCAGGG CTGAAAGAGGGAAGacaaacttgaattttgagccaTCATATAATAAATTT AATGTGCTTAAACTTtgtgaaaaaagggaaaaagaaaATGTCTCTTTGAG GATCTTTTCGCATCATTGTAAACCTTCAATTCAGAATACAAGACTTCCCC TCTCATAGAAATGGCATCTGGGCTGAAAATGAACGTAGCCATCCAGATGT TCGATTCTCAATCGAACGCCAACATTCGTCGACAAGCTGTGCGAACGATC CAATACTTAGAACAAGACGAACATTCATTTATTTTCAACGCGAATAGTAT CGTTGGGGACGGAACGACCGCTCAAGTATCTGCTATGTTGACAGGTATAC TTTTgatcaaaatattgtttttgaaCCATATGAAATTTTACCATTCATAA GAAAAAGAGTCTTGCCGAATAAATTTAATTAATAAGATTAATTCACCACG TTAATAGTTTGacaaaaaaaggtctatagaaaGCATCATTTTTATACATA TCAATGTTCGTTTTGATACAATTACTAAATTCTAAAACGAGATCCGCGAT GGCAGTTGGCATCTTTTCAAGAAGAATGTGTTCCTAGTATTACTGTTCTT TCGCTCAGGAATCGCGGAAGAAGATCAGTACGAGACGCGGCGTGGATTTC CCAACACGCGAACTGTTGACGATTTCACGTGGATATTCGAAGATTTTTCG AACGCCGGTTACGCGACTGTTTACACGGAAGAAGATACTCGATATGGGAC GTTTAATTATCGTTTAAACGGCTTTAAAGAACCTCCGACTCTTTGGTATC CAAAGCCTACGTGGTTAAGTTGGGACGCGATTTATCTCAGACATTCCTTA TGCTCGGCTGAGAAGAATATGgcttatttgaaatatttcgatCAGATGTT TGACGGCGTTGGTAAGTTCGCTTTCGCTTTGACCGCTTATTTGACTCATG ATAGCTTAGATGCCATGCAGAGCATTGATCAATCGATTGTAGAGTTGATA CAGTATTATAAGAATGAGGGAAATACTATGTTTGTACTGTTCGGAGATCA CGGATCGAGAACAGGTGGTGTCCGTGATTCGCTTCAAGGGAAACTGGAAG AGAGACTACCCTTCTTGTCTATCACGATGCCAAAATGGTTTCGTAAAAAG CATCCAgatttttacaaagctatgggtGAGAATACGAACGTTTTAACGTC TTATTTTGATGTTTACGCCACGTACCGCCATATTTTGTCGTACCCAGTTC TCCCTACTGATGTTTTCGGACAgagtttgtttacaaaattaCCTCTCAAT CGAACGTGTGGTGACGTTGGTGTTAAAGAACACTGGTGCGCATGCTTGGA TTACAAAGACATTTCTGTCAATGACCCATCAGTGAAATTAGTGGCTGGCG AAGTTGTGAAATATATGAACAGCTTGCTGGTTGGATTGAATAATGAGCGT AAAACGTGTGCTCAAATGTCTCTCGATAAGATCATACACGCTGGTGTGAG GAAACCAAAGGAGGTTGTACAGAAGTTTAAGAATACAAAACGCAATGAGA AATGTGATTCTTGTGCTATTGATCTAGACCAAAGCATGGAGACTGATCAA GTTTCTATTCGAAGTTTCGAAATTGTCTTGACTGTTCAGCCTAGTGGTGG GAAATTTGAAGTCAATGCGAAGCTGGGGCTAGATAATGTAGTGACTGTTG ACCCGCAGATAAGTAGAATTAATATGTATGGTGATCAACCAAAATGCATT GCGACAATTTATCCTCATTTAAGACCGTTTTGTTATTGTGTTTAGTATAT ACTTctgttgaaattaaacaaattaTATTAGAGAAATTATATTAAGGTTA TAATAGATTATCATATAAATCGCTAGATATATATAACACTAGAGGGTTTA ATATAAAATTGGATTATATAAATTGAGAttacattatatatttttactgA TAGTTTACTAGTGATCTCTAGACATTTCGCATTTAAAGGGGTATAGTGAA TTCTTTGATAGGCAATGAGAAAAGCATATTCTGTTGAAACCGTCATATTT CCCCTTGGAAACATCTGAAAAAGCCGGAAACATGGGCCAAGATTCGTTGT TTTGGGTGTTTCCGAGAGGAAAAATTAGATGACGTAACTTTAAAGTTTTT TCCTGTGTTTCATATATCAAGAATGTCATTTACTCTCTGTTTGATCCGAA AAAATAACATTTCGGCGCCAATTTTCAGGCAAGACACTGTATCAATCCCT GAACTTTGaccaaatattgaaaatgaaataagctctttttctgaaaattc tgCTACAATTACTATTTTCAAATTAGCTCTCAAAACATTATCATTTCGAT AGAGATTTTTAGTACAAAGATACAACTTTATGCTTGTGTTGTTATTACTA TActaaatgattttaaaaaggCAACCTGATTTTGTGTTATTAACTATTAA CTAATCCTTTTCCAAGGTTTACTCTTTTTCCACTGACATGATGTTATATT GATACAGACTTGAGCCtcgttttcagtttttttttgctgtCAAGATATAA TTATTCCTAGCCCTGACTGGCAATCACATTAAGTTAAATTCTACTTATTA CTTCACACTATTAGATATCCAGGAGCAAAAGAACTTCATTTCATCAATAT CAAATTAAATGGATAAATGGTTTTGATCTCGAATGTTACGGATCTTACTT ATTTTGACTTTGCTGTACATCTTTTACGAAGCTAATAGGTAGAATAGGAG CATGAATTCGTTTGGGGGATATCAACAGCCTTATGGGTATTTTTACTATG CATTCCATAGCATTAATATATTTTAGGtagaacatttttatttttttatt tccattatttttagttCCATATTTTATACAATTGGCATTTTATTTCTTGG CATACATTTATATGACCTATTTCAATAGAAGCAAAATAATAGGAGACCTT ATGACAATTATTTtctgttaaaaaaaatcatagctgaggcgaaaataaaa aaatgtagtgtttccagaAACCGGccggatgaaaaaaaaaatttctgacc cggccgcagactcgTTAGTAGTTAtaatacatttttatttttttatttcc attatttttagttCCATATTTTATACATTTGCATTTCTTGGCATACATTT ATATGACCTATTTCAATAGAAGCAAAATAATAGGAGACCTTATGACAGTT ATtttctgttaaaaaaaaatcatagctaaggcgaaaataaaaaaatgtag tgtttccagaAACCGGCcggatgaaaaagaaaatttttctgacccggccg cagactcgTTAGTAGTTAtaatacattagtattcagggcttacttcatac tgtttgtacataaaagttatcttta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022569TCONS_00022569Clytia hemisphaericatranscript
TCONS_00022570TCONS_00022570Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00022570-proteinTCONS_00022570-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000427supercontigsc0000427:245027..251251 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.3 3.57 1.2 0.69 11.22 8.77 11.35 12.96 7.73 8.07 6.6 5.24 4.42 3.6 6.34 5.9 7.49 5.95 2.07 2.92 4.59 3.99 16.77 15.4 3.65 5.93 3.64 2.6 12.98 12.45