MSTRG.15429.1.p1 (mRNA) -

Overview
NameMSTRG.15429.1.p1
Unique NameMSTRG.15429.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000136_pilon:292922..298716+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15429.1.p1 ID=MSTRG.15429.1.p1|Name=MSTRG.15429.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5795bp|location=Sequence derived from alignment at sc0000136_pilon:292922..298716+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGGCTGTGTGTTTTATGGTTGCAGTTTCAAAGTATATTGGCCAAAGTCG
AAGAAGGTTgtgaacaaaaatcaaaaactggaaattttatgatttttgaa
ttGTGATACAGTTATAATTTATGTGATAAAAATATAAGATGGATAAATAT
TGGAAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGTCAATCTTTGTGG
ACCAGGACGATCTCCTTCACACTCGAGGTTCAAACGCTTGAGAAAAGGTG
ATCATTTTCCTGAATATCTTCATAGTGAGGTAGATGTATACGATAAAAAC
ATACCCCCAAAACATTGTTCAGAATTGGTCCAAATTATAACGACGGATat
catttttaaagattatCGATTTGAAAGTGATGCTAGAAAAACAACCAAGG
TATTGTTTACTTTTATTGCTAACAATTAACGGAAAGtttttttATGCTGA
TCTCAtttttttCGGAATTTGGTTGGTTAAGCTTTTGTCTTAAAAGATTA
TCTGATAAAGTAGTCTTTTTATTCGGACTATGgttcattgatttcaaagc
cccgaagaGGCTAGATCTGAAACTTCTGACACGTGACTCGCTTGGCTTTC
atgcaaaatttctaaatgcggGGCGAATCTTAAGGctttattttttcttg
cttgcgaaagattgaagattcctctcAAACTCGATACTATTATTCTAGTT
ATTCATACAAGCTAGACAATGGaaaagaggtaaatattcaaaaaatttat
ttcaaaagttttatgtctttcaaaaaaagttttagcttttattttttttt
tagtcggaccctaaattttcgaaaaactaaCGAAAccttatcaaaataaa
acaaagcaCTTGAAAATTCATTAATAAAGACCTAAGGAAACCGGGAACCC
AACGGTCTACCAACAGGAAATgattaaaatataaattttcctggTGTTGG
TGTGTTTACCACGGTTTTTGATTAggtataaattgaaaaatttaaccaAA
AAAGGCAACGttttttttgacgaacaccttttgagcgacgtggtgatttc
tttttttgacagtttttaaCGTGATCAAAGCGAAGAGCTTGCTCGACCAG
AATTAAGTTTCGATCCTCTTAAGATTTTAAGcacgacccccccccccggg
caataTCAAGATGAAATAGGAAACTACAGGTGCGAGTGTCAAGCTAAATC
TGTTTCACTCTAAAATTAATTGAAAGGATTAAGttgattctttttcttct
tcattttcaatcttcattttcgcacaaaaccgctatctaattcgaattct
ataaaaaaatacgacttcttttgtctccgctgcaaattatattgaaacAG
ATTTTATGAAACGTTTCTCACATTACATTAAACTTCAAATAGTTCTTTAT
AGCCCCATTAAAAGCCATAAAATGAACAATTAGGCATATCATTGTGCATT
TTAGAACCGGAAAAGCTAATGGTGCATAAAGAGTCTGCCGTTAAAAAGTc
gtaaaacaaacaaatttacaaTATTAAATTGTTTTTTGATCGAAAACTTC
AAACTGGCATAAAAGCTTGAGAGTTAGACCAGACAATGGTTAGACTAGAA
AATGGTTTTAGCACAATCACAAAGGTATTTTTCATACTcctttaaaatac
tttctgcTTATGCCCttaaaaccattgagtttaaagccccaacggctaga
gttcaatctctaacctttctcaggcaagaaaaagcaaagccttaaaaaat
gcgccgcatttttgacgacagattgaatctagcaattcctttgtttacga
ttgataattttttcgaaatttagcggtaaattttagtttcaatctgttat
ttgtgtaaaaaccaggcgagccgctcaaggccgcgcaacttggtaggatt
tgttggcttcaaattttaccgaggagattgacttctagcccttcgggctt
atacttcattgcttAAAAccaagtggtcaggagctacGACTAAAAGTCTC
GGACTTAGCATTTTGACCTATGGTTTTAGAAGCATATACGCGTCTTTTGG
CTTTAAgcttacaaaaataaacaagaagccggagcggcgtgaaggtccag
ctgacatggcaataaccgaatgtcgttcgtactgggttccttaagtgacg
caaaaaaatttccttcccatcctccactctgagcttctattctttaaAAC
TTGCTTTGTATTGCaaagttctgaaagtttttgatgcatttcacgaaatt
tcgaaacttttgacGCTTaggggattcgaacccactatatacaaatCACC
TATGAATGGAtcgccagcgccttaaccactcggccatcgggtcacaactg
cattaaggagttcaaagttccttataaacatggtatttactccaaactct
acccgggggctaaaacccttaccaggggttaactcccatccccaacccta
cctgaaacaaccctttaatctaaccgggaaatttgactctactaccaatt
caatacaaaacataggtcaaacaacgcgcgggtaggcggggcaaaaattc
tagatcggcggttggtttagcctggacttgttaatttattgcgcgcacag
gccccgacaaagactaaatcttttcgatcagttgctttttaaaggtccat
tctgctgcgcgctggaccaacaaaaaatagcaaaaattaaagttttgGAT
TTGGCATTGAATAAGGTAGagctaattttaattttttgatttttttactt
tttttttggatttagatTTGCCGTAAAGCGTTACTCAAGTTATCGAATAT
TGTAAAATCATATTGGAAAGGAACGTTGAAACTTCTTGTCATTCAAGGTT
ATATGTCATCACCAGAAAAAGAAGTGGAAAACGATAAACTACATATGCTA
GGACGAGCATTTAATCTTGAATTAAAACTAAGTAAAAATCCAAGCAAGAA
TCACAAAGTAGCTGATCATGTCATTTCAAGACTAGGGGAACTTGCATATA
GAAATACACAATTTCAATATGTTAGATTTGACGAAGGTGGATATCTTCAT
GTTTCCTGCCCATGCGAAggtgatttcatttttattgaatCTCTTTCTTT
ATGATAGGAAATGTCTACATTCATTTTTAGGATAATACATTATTGtcctt
tcccagctggcactcaaagttgttttaacgttcaaataacgttatttgga
cgttatgaatgtcaaatggacgctgttttgacgttgtgtgccgtctgggt
tAGCATTCTTCTTGCATGAACCGGAAGAAGCTTCCTTTATCCTTCTTGGA
CAAGAAGCCAATGCCCAAAAGCAAAGGTTCGGTTACCGTCGTTTTAGATA
AGatggccgggtagctcagtcggtagagcattcgccttacaatctaaggt
ttgtgggttcgatccccggtcaccgctaactcagcggatgagtagcttag
attgggtaatctgatctaggcggtaagttactgggagctgagagtaggtg
tggcgctccacctcagcattcgatctcccagatCTAGCGcgaatagaaaa
ggggatagacccCTTCACTCCccgctccgccgacagccactagatgaata
tacttacttataCTTACTTAGATAAGATTCTACCTCCAGGGATTTGATTC
CACTGACCTTTCCGCTATCTTTTCCGGGATTGCCAGCTcaagattgaaaa
aatattttttctcaatgtgGTACCGAAAAAAGATTGTGCTGATTTAGGAA
ACTGGTTAACTTTCCAAACCCTCATTTTTCAACTATCCAGAACTCTGTTC
TTTTTCCTGCTAGAAAGTGACGGTAGAATCTTGGTATATGAAGTGGAATC
TCACCCAAATCAACATCCGAAAGTGAATACTGGATACTCATCTCAATTAA
ATCATGACGTCATATCATGGGAAAATTCATCTCAAGAATATAGATcattt
tcgatttgaaaacttgcaTTTGCGTCAAGGAAAAGACAATCTAAAATTAA
AAGCATGTCAAATATGTGTCTACTTCAAGTGTGGATTTTAAACTGTGCAC
ACATAATTACCCAATTAAATTTTACAAACGCGTTTCATCGAAATTGATTT
AATTGTTGGGGTTTGGCaaaaaaaGTGCCTTAAAAGCAGACTTATATTTC
ATCACCAAGCTTTAATAATGCTTTAAATGGAGGATAAAGACAGCTTCCTG
GCAACATTTTAGTGTCATTTATTTCTTTACAGTTTATTCTTATATCGTTA
GCTTTTTATCCCTATTTGTCCTTATCCCGGGATGGGACTTGTAGATTTCC
GTATGGATGGGGCCCAGTAGTGTGGTGACCGGGGGTTCAATGCGCCTTCG
AGCGGCCAAGCTTTTTGGATGCTCTGAAAGTCTTTGGGGTGTTGAGAGTC
AATGGATCCTAGAGGCGCCTCTGATTGCTTCTCTGCACCAAAAGATTAGC
ATCGGCATAAAAGAGGGAGGATATTCAACAAATTTCGTACCGACTTCGCG
TAATTATTCCAAAGAAAATGGGCTCCCAAGTTTGCCTCAGTTCTGGTCGA
CCCACCAAACTACAGGTGGAGACGCCCTTACTTACTTCCATATCAAGtat
taaaatattcaatatttctttttttcgatttcttttcagTCGATAAAGTT
GAAAGCAGATGTTTTCCATCAAACTCTGAAGTCAATCTTCAAAATGGCAG
CCGAGCACTGATCAAAGATATTCGACCTGGTGACTCAGTACTCACAATGA
ACCAAAATGGAGAATTGAAATTCGATGAAGTTGTCATGCTGATGcatcaa
aacaaaggaactCTCATTCAGAATTATGTACAAATTACAACAGATAATGA
CAAAAGTATCACAATCAGTAGACACCACTTGATTTTTGTTTCCAAAACTC
AAACTAAATACGCTAAAGACGTTCTCACCGGTGATTTATTATTCACCTAT
GATTCATTAACCAAAAAAGCTGCCAAATCAATTGTAACACACATTGAGCA
TGATGTCACTCAAAAAGGTATGCATGCTCCTTTGACTAAAAGTGGAACTT
TAATCGTCAATGATGTTTATGCATCTTGCTACGCTATGTTTCCGTCGCAT
CGTGTTTCGCATGCGGTGTTTTGGTTGTGGAGAcaagtttatgatttttt
gaaatactttgatTTCTCAATTGGAATACCTTCAGATGAAATACATTGGT
ACCCCGATGTTTTCCGAAAAACTTTGGTTTACTTCAacgttttataaaaa
atcttttggaaGATGTTTGGAAAGTGGCGCTAACTGAAGAAGCTGGCTTA
ACATTTAAAGCATCCCTGTCTTAGTACTCGTTGGTATTTTTTCCACATCG
GTggagttaaaaaattttatatcaaaatctcaATGGTGGGatggaaattt
tattgttccaaacgaaaaatccagtgggggaTGGTTTTATGAAATTATTT
CAATCAATTCCTACTAAAATTAACAATATAACTCCGATGAAATTGAGGAC
gaaattcttattttaccaGGAGCTACTCTGGGTCTGTGATATGGAAAAAG
CAAAGTATATCATATTTAGAGAAGAACTGTTGCTGATGCTGAACTAGAGC
TGAATTTTGTGATTAACTCCTGGGGGGAgacactcaaggtaaatgacttA
CCATACGTGTGGCCCTTACgggtatattttccaagctccccaaagtgcac
tgtaagggtagaaatcagcgaagatgagaaaaattgcactctaagggtgt
aaaatttcgaaaatttgaccatatcttgcctgaaaatggtcaaaa

Coding sequence (CDS) from alignment at sc0000136_pilon:292922..298716+

>MSTRG.15429.1.p1 ID=MSTRG.15429.1.p1|Name=MSTRG.15429.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3519bp|location=Sequence derived from alignment at sc0000136_pilon:292922..298716+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATAAATATTGGAAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGT
CAATCTTTGTGGACCAGGACGATCTCCTTCACACTCGAGGTTCAAACGCT
TGAGAAAAGGTGATCATTTTCCTGAATATCTTCATAGTGAGGTAGATGTA
TACGATAAAAACATACCCCCAAAACATTGTTCAGAATTGGTCCAAATTAT
AACGACGGATatcatttttaaagattatCGATTTGAAAGTGATGCTAGAA
AAACAACCAAGatTTGCCGTAAAGCGTTACTCAAGTTATCGAATATTGTA
AAATCATATTGGAAAGGAACGTTGAAACTTCTTGTCATTCAAGGTTATAT
GTCATCACCAGAAAAAGAAGTGGAAAACGATAAACTACATATGCTAGGAC
GAGCATTTAATCTTGAATTAAAACTAAGTAAAAATCCAAGCAAGAATCAC
AAAGTAGCTGATCATGTCATTTCAAGACTAGGGGAACTTGCATATAGAAA
TACACAATTTCAATATGTTAGATTTGACGAAGGTGGATATCTTCATGTTT
CCTGCCCATGCGAAgTCGATAAAGTTGAAAGCAGATGTTTTCCATCAAAC
TCTGAAGTCAATCTTCAAAATGGCAGCCGAGCACTGATCAAAGATATTCG
ACCTGGTGACTCAGTACTCACAATGAACCAAAATGGAGAATTGAAATTCG
ATGAAGTTGTCATGCTGATGcatcaaaacaaaggaactCTCATTCAGAAT
TATGTACAAATTACAACAGATAATGACAAAAGTATCACAATCAGTAGACA
CCACTTGATTTTTGTTTCCAAAACTCAAACTAAATACGCTAAAGACGTTC
TCACCGGTGATTTATTATTCACCTATGATTCATTAACCAAAAAAGCTGCC
AAATCAATTGTAACACACATTGAGCATGATGTCACTCAAAAAGGTATGCA
TGCTCCTTTGACTAAAAGTGGAACTTTAATCGTCAATGATGTTTATGCAT
CTTGCTACGCTATGTTTCCGTCGCATCGTGTTTCGCATGCGGTGTTTTGG
TTGTGGAGAcaagtttatgattttttgaaatactttgatTTCTCAATTGG
AATACCTTCAGATGAAATACATTGGTACCCCGATGTTTTCCGAAAAACTT
TGGTTTACTTCAacgttttataaATGGATAAATATTGGAAAACGTGTCTA
CTGCTCTGTCTATTGTCTCCAGTCAATCTTTGTGGACCAGGACGATCTCC
TTCACACTCGAGGTTCAAACGCTTGAGAAAAGGTGATCATTTTCCTGAAT
ATCTTCATAGTGAGGTAGATGTATACGATAAAAACATACCCCCAAAACAT
TGTTCAGAATTGGTCCAAATTATAACGACGGATatcatttttaaagatta
tCGATTTGAAAGTGATGCTAGAAAAACAACCAAGatTTGCCGTAAAGCGT
TACTCAAGTTATCGAATATTGTAAAATCATATTGGAAAGGAACGTTGAAA
CTTCTTGTCATTCAAGGTTATATGTCATCACCAGAAAAAGAAGTGGAAAA
CGATAAACTACATATGCTAGGACGAGCATTTAATCTTGAATTAAAACTAA
GTAAAAATCCAAGCAAGAATCACAAAGTAGCTGATCATGTCATTTCAAGA
CTAGGGGAACTTGCATATAGAAATACACAATTTCAATATGTTAGATTTGA
CGAAGGTGGATATCTTCATGTTTCCTGCCCATGCGAAgTCGATAAAGTTG
AAAGCAGATGTTTTCCATCAAACTCTGAAGTCAATCTTCAAAATGGCAGC
CGAGCACTGATCAAAGATATTCGACCTGGTGACTCAGTACTCACAATGAA
CCAAAATGGAGAATTGAAATTCGATGAAGTTGTCATGCTGATGcatcaaa
acaaaggaactCTCATTCAGAATTATGTACAAATTACAACAGATAATGAC
AAAAGTATCACAATCAGTAGACACCACTTGATTTTTGTTTCCAAAACTCA
AACTAAATACGCTAAAGACGTTCTCACCGGTGATTTATTATTCACCTATG
ATTCATTAACCAAAAAAGCTGCCAAATCAATTGTAACACACATTGAGCAT
GATGTCACTCAAAAAGGTATGCATGCTCCTTTGACTAAAAGTGGAACTTT
AATCGTCAATGATGTTTATGCATCTTGCTACGCTATGTTTCCGTCGCATC
GTGTTTCGCATGCGGTGTTTTGGTTGTGGAGAcaagtttatgattttttg
aaatactttgatTTCTCAATTGGAATACCTTCAGATGAAATACATTGGTA
CCCCGATGTTTTCCGAAAAACTTTGGTTTACTTCAacgttttataaATGG
ATAAATATTGGAAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGTCAAT
CTTTGTGGACCAGGACGATCTCCTTCACACTCGAGGTTCAAACGCTTGAG
AAAAGGTGATCATTTTCCTGAATATCTTCATAGTGAGGTAGATGTATACG
ATAAAAACATACCCCCAAAACATTGTTCAGAATTGGTCCAAATTATAACG
ACGGATatcatttttaaagattatCGATTTGAAAGTGATGCTAGAAAAAC
AACCAAGatTTGCCGTAAAGCGTTACTCAAGTTATCGAATATTGTAAAAT
CATATTGGAAAGGAACGTTGAAACTTCTTGTCATTCAAGGTTATATGTCA
TCACCAGAAAAAGAAGTGGAAAACGATAAACTACATATGCTAGGACGAGC
ATTTAATCTTGAATTAAAACTAAGTAAAAATCCAAGCAAGAATCACAAAG
TAGCTGATCATGTCATTTCAAGACTAGGGGAACTTGCATATAGAAATACA
CAATTTCAATATGTTAGATTTGACGAAGGTGGATATCTTCATGTTTCCTG
CCCATGCGAAgTCGATAAAGTTGAAAGCAGATGTTTTCCATCAAACTCTG
AAGTCAATCTTCAAAATGGCAGCCGAGCACTGATCAAAGATATTCGACCT
GGTGACTCAGTACTCACAATGAACCAAAATGGAGAATTGAAATTCGATGA
AGTTGTCATGCTGATGcatcaaaacaaaggaactCTCATTCAGAATTATG
TACAAATTACAACAGATAATGACAAAAGTATCACAATCAGTAGACACCAC
TTGATTTTTGTTTCCAAAACTCAAACTAAATACGCTAAAGACGTTCTCAC
CGGTGATTTATTATTCACCTATGATTCATTAACCAAAAAAGCTGCCAAAT
CAATTGTAACACACATTGAGCATGATGTCACTCAAAAAGGTATGCATGCT
CCTTTGACTAAAAGTGGAACTTTAATCGTCAATGATGTTTATGCATCTTG
CTACGCTATGTTTCCGTCGCATCGTGTTTCGCATGCGGTGTTTTGGTTGT
GGAGAcaagtttatgattttttgaaatactttgatTTCTCAATTGGAATA
CCTTCAGATGAAATACATTGGTACCCCGATGTTTTCCGAAAAACTTTGGT
TTACTTCAacgttttataa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15429MSTRG.15429Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15429.1.p1MSTRG.15429.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15429.1.p1.exon1MSTRG.15429.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15429.1.p1.exon2MSTRG.15429.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15429.1.p1.exon3MSTRG.15429.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136_pilongenomesc0000136_pilon:292922..298716 +