MSTRG.12911.1.p1 (mRNA) -

Overview
NameMSTRG.12911.1.p1
Unique NameMSTRG.12911.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:212851..215342+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12911.1.p1 ID=MSTRG.12911.1.p1|Name=MSTRG.12911.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2492bp|location=Sequence derived from alignment at sc0000100_pilon:212851..215342+ (Clytia hemisphaerica_ch_hm2_pilon)
TCTTTAGATTACAGATCAAAAAGAAACTTCAACAAGTGGAGCAAAGTAGT
TTGACTTTTGATAAGAAAAGAGGCGTTCAGAACATTGGATCTTTTGGTAT
CGGtgcgttggaaagatattgaaAAGAAGATATGGGTAATTATAAATCGA
AGTCGAAATTACATCGTAAAACAGTGAACGATTTGAGGGACAAAACACAA
ATGAGTGAAAAAGAATTGACAGATTGGCACCAAGGTAAGGGgtagaattt
tcttcgaaaacCCTGTCTTTACTTTTTCTCATCCTCATAGCTAAAGCAAA
CAAGATTTCACTTGACTAGCATCATTCTTTACCATGTTCGTTCAAAAGAC
AATTTTAAATCTTCCAAAAAATTCAGCATTTCCTGTTTGTTTGGCTCATT
ACTTAAATTTGTCAGATAATGCGTTCCTCAATTTTACCTGTTTGACTACA
ACAGACGGCTTCCTCGTTGGTCAAAATTCAGATACACCTAGTTGACCAAT
AAACCTGAAAGTATGGGAGACAAAAGccctaagaaaacttgaaaaaagtt
ttaatgttCCTTTAAGTATTTTGAATTCTGTACATCTTCAAAGGTTTCGG
CtctgtaatttttgtttaagttaacaaaaaattttcccaaaagatTTGAA
ATGATATAAGCTTCTTCCTATACAGAGAAATCAAAGAATGGTTCTAGTCG
ATTGAcgattttttgaacttttttatttgaactttttgaatttgaatttt
ctgaaaattttcaacatttgatttttcgaatctaaactttttATCGGGAG
TTGACCCCAATTCAAGATAATTAGGAAATTGTCACGTTTTGTAGTCaaaa
aaaaTGCATGATCTAAAATTACAAAACTTCGGTGATTGCGTAACAGATTA
TTGTAGCGCATGCGTAGGTGGAATGATGATCGTAAACTTATGCAAACCTG
CTGTCCGTGTGTAACAATATTATGAGAAAATTGTTGAGAAATGTTAAGTA
CCTCAGAAGTAAACGCATGTTTAAGTGTGaccaaaacttttgtttttcct
tttggAATTTTGTTTATGTATTGAAGAGGCAAATATTCCTTGTAATCCTT
TTGGCCACAATACCAACTACCATCATAAAACTCATCGATCACGAGCTATT
AGCATGATATctaattattcaaaaattacaaccaaattgaaaaagaaatg
acaTTTAACTTGTTAGGTCTAAATACTGTAGAAGGTTTTCAGATCCATCA
ACGTCAATGATGAAAGAATAGCTAAATTCACTTCAagattactttatttt
tttcagcgTTTATTAAAGACTATCCCTCAGGCAAACTGAATGTGgagcaa
ttcaaaaacataTACAATAAATTCTTTCCCAATGGAGACGCTGGAGTTTT
CGCAGAACAAATCTTCCAATCGTTTGACAATAATAACGACGGATTTGTGG
ATTTCCGAGAATTCATGACAGGCCTTGCTGTCTTCAAGAAGGGATCAGTT
GATGATAAATTGAGATGGGCTTTCTCCATGTACGATTTAGACAAAAATGG
GTAAGTGCTTTAATTGCTTGAAAACTATTTTCATGACAGATAAAAAAGAA
GGCCGTACAGTTATTTTTATGGGTGGCTTTGTGGGGCGCATAAGCATCGT
GTATGAAAAATCAGATTCAGCCCCAGAGATACGAAAGCAAAAAGCAATGT
CATCTGATAGACGGCGTACCCTCTCCAGCCCTGATtgtggaaaaattaaa
aatgaaaaaggctGAGATTTAGATACCTTTTGTAATATTTCACGATTGCA
TGCGTGATCCAGGGTATATTCTTGTTTTTACTCAGTAATCTGTAGATTAT
GGATACAAATTTCTCCATCctttaaaaagaaacaaaattccTCTTGAAAG
TACAAATTCattcttttcatctttctgTAGACAAATTTCGCACTCAGAGA
TGTTGGAGGTTGTTAGTGCAATTTACAAAATGGTGGGTGATACCGTAGAA
TTACCGGAAGATGAAAGTACACCGGAAAAGCGAGTCAACAAAATTTTCTC
ATCCGTAGATACTGACCATGATGGATATTTAACGTTGGAAGAATTCCTCG
AGGTGGCCAGTAAAGATAAAACCATTCGTTCATTGTTGCgctgtaaataa
aaaaagaaagagaaaaactcaCGAGCTAAAAATCGCGAGTTATGAGTTAC
AAACTTGGTGAAATCATCCTTCTATCTTGGCTAATTACCAAAACAGTTTA
GTTATGAGCTCAATTAAAAATGACTCAATCCAAATATATTACGACCATTG
ATTATTTAGAATAGCAGAGAGTCAACAAACAGCTTTCGttggatttattt
ttcttgGGGATGTAATCGGTACAATGTTggaataattttcttttgatgta
tATTTATGAATAAATAATATTATGGTAAAAAATCCTGTTTATGCCTTTTT
CAAGAAATAATGGTAATATCATAATACATTTTAATCCTAGGA

Coding sequence (CDS) from alignment at sc0000100_pilon:212851..215342+

>MSTRG.12911.1.p1 ID=MSTRG.12911.1.p1|Name=MSTRG.12911.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1701bp|location=Sequence derived from alignment at sc0000100_pilon:212851..215342+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTAATTATAAATCGAAGTCGAAATTACATCGTAAAACAGTGAACGA
TTTGAGGGACAAAACACAAATGAGTGAAAAAGAATTGACAGATTGGCACC
AAGcgTTTATTAAAGACTATCCCTCAGGCAAACTGAATGTGgagcaattc
aaaaacataTACAATAAATTCTTTCCCAATGGAGACGCTGGAGTTTTCGC
AGAACAAATCTTCCAATCGTTTGACAATAATAACGACGGATTTGTGGATT
TCCGAGAATTCATGACAGGCCTTGCTGTCTTCAAGAAGGGATCAGTTGAT
GATAAATTGAGATGGGCTTTCTCCATGTACGATTTAGACAAAAATGGACA
AATTTCGCACTCAGAGATGTTGGAGGTTGTTAGTGCAATTTACAAAATGG
TGGGTGATACCGTAGAATTACCGGAAGATGAAAGTACACCGGAAAAGCGA
GTCAACAAAATTTTCTCATCCGTAGATACTGACCATGATGGATATTTAAC
GTTGGAAGAATTCCTCGAGGTGGCCAGTAAAGATAAAACCATTCGTTCAT
TGTTGCgctgtaaataaATGGGTAATTATAAATCGAAGTCGAAATTACAT
CGTAAAACAGTGAACGATTTGAGGGACAAAACACAAATGAGTGAAAAAGA
ATTGACAGATTGGCACCAAGcgTTTATTAAAGACTATCCCTCAGGCAAAC
TGAATGTGgagcaattcaaaaacataTACAATAAATTCTTTCCCAATGGA
GACGCTGGAGTTTTCGCAGAACAAATCTTCCAATCGTTTGACAATAATAA
CGACGGATTTGTGGATTTCCGAGAATTCATGACAGGCCTTGCTGTCTTCA
AGAAGGGATCAGTTGATGATAAATTGAGATGGGCTTTCTCCATGTACGAT
TTAGACAAAAATGGACAAATTTCGCACTCAGAGATGTTGGAGGTTGTTAG
TGCAATTTACAAAATGGTGGGTGATACCGTAGAATTACCGGAAGATGAAA
GTACACCGGAAAAGCGAGTCAACAAAATTTTCTCATCCGTAGATACTGAC
CATGATGGATATTTAACGTTGGAAGAATTCCTCGAGGTGGCCAGTAAAGA
TAAAACCATTCGTTCATTGTTGCgctgtaaataaATGGGTAATTATAAAT
CGAAGTCGAAATTACATCGTAAAACAGTGAACGATTTGAGGGACAAAACA
CAAATGAGTGAAAAAGAATTGACAGATTGGCACCAAGcgTTTATTAAAGA
CTATCCCTCAGGCAAACTGAATGTGgagcaattcaaaaacataTACAATA
AATTCTTTCCCAATGGAGACGCTGGAGTTTTCGCAGAACAAATCTTCCAA
TCGTTTGACAATAATAACGACGGATTTGTGGATTTCCGAGAATTCATGAC
AGGCCTTGCTGTCTTCAAGAAGGGATCAGTTGATGATAAATTGAGATGGG
CTTTCTCCATGTACGATTTAGACAAAAATGGACAAATTTCGCACTCAGAG
ATGTTGGAGGTTGTTAGTGCAATTTACAAAATGGTGGGTGATACCGTAGA
ATTACCGGAAGATGAAAGTACACCGGAAAAGCGAGTCAACAAAATTTTCT
CATCCGTAGATACTGACCATGATGGATATTTAACGTTGGAAGAATTCCTC
GAGGTGGCCAGTAAAGATAAAACCATTCGTTCATTGTTGCgctgtaaata
a
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12911MSTRG.12911Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12911.1.p1MSTRG.12911.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12911.1.p1.exon1MSTRG.12911.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12911.1.p1.exon2MSTRG.12911.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12911.1.p1.exon3MSTRG.12911.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:212851..215342 +