MSTRG.13248.1.p1 (mRNA) -

Overview
NameMSTRG.13248.1.p1
Unique NameMSTRG.13248.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000104_pilon:363019..366749+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13248.1.p1 ID=MSTRG.13248.1.p1|Name=MSTRG.13248.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3731bp|location=Sequence derived from alignment at sc0000104_pilon:363019..366749+ (Clytia hemisphaerica_ch_hm2_pilon)
TGTCCCAAGACTGGACCGAAGAAATTCTACTGTCAATTTGGTATGctatt
aaaaatttgattaagttTGTTTATATAATCTtcatggaaaatgaaaaaga
cagTTACATTTTGATAGACTGAGATCTTGGCTTCCCTTCCCTTGCATTTA
GCTATTTCAATTACTCCGACAACCTGGTTGTCATAAAGTTACAGAAAACT
ATAGTCTATGACATCCAAAATGTATTTCGAATATGGCaaaaaaaTGCTTT
ATAATTAATAAGCCCTACTGCGAAACACCTTTGGTCAGTTCAGAAAAAGT
TGATAGCCTTAGGTACAAAGTAGAAAATATCTGATGTTATGTACAACCTG
ATTTTGTTGAAGAGATGATTAGTCTTAAatgctagtctgaatcgcaaaTC
TTTCCCAAACCGCAggtattaccgagtttatgtatcggaggatatcgagg
gcgacggtaagtgaaatcgattcaaaacaaagtcgatagttgatgtacag
ctctatatcgcctttgctcacctaaacagatgacggtattttggtgtttt
taccgtcgtcgagcaaagtggacgttGATTACGGCcccatgtcaactttg
ctttataccaccccctcgatttatctcgaatacataaagtTGCAAATGTA
CataataaggaaccttaacttaaGGCTCAGTCTTGCGGCAAAATAACCGC
TTTCGATTCAGCCTAGAATAAAGTGAAATATATCATatggatttttattt
tatttcgtgtttttcagcattttttcccttttcTGCTTCGTCAGCAATCT
ATGGAAACACAAATCGTATGTCAAAATGTCCTTTAGCTCAACATCAAAGC
TGATGTAGAATCAATATGGCTAACGAAATCTCACTGAGTCTTTAAAACAT
GGGTGTCATATTTGCTGATGACATCCtaaaaaatcattcatttttcttaa
aacCTGCATTAAACCAAGTCTTCAACTTTACTGAAGCCCTGCGAAATTTT
TAATCCAttattttgagaatttcttcaaaaggtgcttgttaatttcgcct
agcgaaagtattacgatcagCGTTTGTGGTGGTTGGTGGTtcggaaaaaa
aatagaaaacgaaagtacctgatacggtggacgaactcactaaaatcaat
ttacaaattacacgctcgtataaccacggacgattttcgtaggttttctt
tggattacgtcatatattattgtgtctttagcttcacagtttttttctta
tttattttcttataagcatatactttataaaaatcaataactcttgatag
acggtgacatacctttcggaaattagttcttacaaagtaatcaagggatg
gcgcacaatatgagcatatttgtttttcttataagcatatactttaaaag
attcaaatcaataactcttgatagacggtgacatacttttcggtaattag
ttcttacaaagtaaacaagggacggcgcacaatatgagcatatttatttt
ttataagcatatactttgtaagagttcttaaaaattaaacagcaattgtt
cttaaattggtcttatttttttagtgattttaagcctcgttgttcttgta
aaattgtttcatcaaggctcgatatAAAgaagatttcagattagcttcaa
tctctacttcttctttttcccatgcagttcaaattctaggcgaaattttc
gacttcaggTCGTCttgttagtatttttttaaatgataagGATTGTTATT
TAGCTACAAGcttgttttgaaaaagatggTGCATATAATCCGTGGATGAT
CTCATAATGTAGGGGCCTCTTTTGAATATGGTTTTGGAAagggaaatatt
tcaaattatattaCGACCATATGGTCATCATTTTAGTCTTTTCCCATCTA
ATTCCTCACATTTTCTCACTGGATACCTATTAAGTTTGTTTGAAGTTTCC
TTCTCTCCTACTCTTCCTGTCAGATTaagataaaaagcaagagagaCTCT
GAAATCGAATCGCTTTGACCAAGAAATttaattaaagattttcaatAATT
ACGGATGATGCTAACAACCAGGAAGGCTTATATATGTCACACTTTTATTC
CCGTGAGTTATTTGTTCTTATGTTTCAgttgtttgaaaatattgatgGCT
AATTATGTCGCAATATATCTCATGGGTGAAGACGGTCTGCTAGTGTATTT
GTTATTTCTGTAAAGTATTACCGACTTTTAGTGAAACGCATCAGTGCAAA
ATTTCAGAGTTCTATCACAATTTGAAGTATGGTTGTAATCTAATCCACTA
TTAAGTACTTTAGTACGGAAAAATTAGTCGGGTATATTTTAGTCATCTTA
TGTCTCGTATTGTATGTAAGGATTAAATAGAAAGTCTGTTCTCGTGTGTG
ATTTTACAGTGATTTTatagtaaatttttcaatttttctaagaaagacCC
ATTTCTAGATTCTCATACATTTTAGGGTCTCACGAAGGATGAGACTCGAA
TAATCAAGTCCCTCTTTAATAAGCCTGAGGccttttatatttataaaaaa
cgaTATGAATTTGATGATAAATTATGCATGCAAAATTGACAATAGACTTT
CTTCTTAAAACGAACGGATCTTACTAAATTATTGACTAAAAGTCTGTAAT
GTTTCCTTTGCACCAACACGGGACCGGATTAAAGGGGAGGGATTCCCACA
GACACGATttgttgttgtgttgttgttgttgttgtactTATTGGGTTCAT
TTATGTCTTTATGAAAGGATCTGTCAAAGATTGTTGACGTCAAGCTATTT
ACTTTTTGGAAGTGTTGGATATAATGACTAAACTTGATAAAGATTTTGAG
GTATTCCGTTTTAAACATGGTTTAGAGTTTCCCTGACTCGTTTTCATCAA
GACTACGAGTACCATTAGAAAGATCGCCCAACGAGTCACATTAGAAAGGT
CTCCGACCAcacattttcaagcaaaaagtaaGACTAGATCGTgtactaaa
aatttgaaagccAGACGTCACTGttttttttCATGACATTTTGAGGATGC
AGCATAAGATCAGGTAAGTGAAATCCATGGTTATCTTTTTAAGAGTTCAT
GAGGAATAATTTTAatcgatttttttgtttcagaggAAGAAGATTAGCAG
GAAGTTATTGGTGACAGACAGTCGAGTCATCATCAATGTCAGCGGAAAGA
TATTTGAAACCAACCAATCAACACTTGATCGCTTCACAGATACACTTCTT
TCCAGTGACAGTCAAGACCGAAAAAGATACTACTGCGAAAAACAGAAGCA
ATTCTTTTTTAACAGAGACCGCAACAAATTTGAAGCTATCTTGTTCTTTT
ATCAATCATGTGGAAAACTCTTTTTGCCACCGTTATGCTCCCTTGAAGAA
TTTATTGAGGAATGCGAGTTCTTTCGTCTACCAAGAGCAGCTATCGATCT
TCTGAAGCTTTTAGAAGGTGCAGAGCTcatgcaaaatgtcaaaaatgccA
GCCGATCATTGCGGCCACCTCGAGCCAATACCTACTTAAATAGAATACGC
AACATGCTCGATTATCCAAACTCGTCTATACCTGCTATACTATACTTCAC
GATGTATTGTCTGCTTATTGTTGTCTCGATTATTAGGTATTGTATAGAAA
CTCTACCTGGAAGCACTATCGACCAGAATCTTTATTGGACTTACTTTGAA
ATAGCTGGAAGTGGTTTCTTTCTACTAGATT

Coding sequence (CDS) from alignment at sc0000104_pilon:363019..366749+

>MSTRG.13248.1.p1 ID=MSTRG.13248.1.p1|Name=MSTRG.13248.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0000104_pilon:363019..366749+ (Clytia hemisphaerica_ch_hm2_pilon)
GTCCCAAGACTGGACCGAAGAAATTCTACTGTCAATTTGaggAAGAAGAT
TAGCAGGAAGTTATTGGTGACAGACAGTCGAGTCATCATCAATGTCAGCG
GAAAGATATTTGAAACCAACCAATCAACACTTGATCGCTTCACAGATACA
CTTCTTTCCAGTGACAGTCAAGACCGAAAAAGATACTACTGCGAAAAACA
GAAGCAATTCTTTTTTAACAGAGACCGCAACAAATTTGAAGCTATCTTGT
TCTTTTATCAATCATGTGGAAAACTCTTTTTGCCACCGTTATGCTCCCTT
GAAGAATTTATTGAGGAATGCGAGTTCTTTCGTCTACCAAGAGCAGCTAT
CGATCTTCTGAAGCTTTTAGAAGGTGCAGAGCTcatgcaaaatgtcaaaa
atgccAGCCGATCATTGCGGCCACCTCGAGCCAATACCTACTTAAATAGA
ATACGCAACATGCTCGATTATCCAAACTCGTCTATACCTGCTATACTATA
CTTCACGATGTATTGTCTGCTTATTGTTGTCTCGATTATTAGGTATTGTA
TAGAAACTCTACCTGGAAGCACTATCGACCAGAATCTTTATTGGACTTAC
TTTGAAATAGCTGGAAGTGGTTTCTTTCTACTAGATGTCCCAAGACTGGA
CCGAAGAAATTCTACTGTCAATTTGaggAAGAAGATTAGCAGGAAGTTAT
TGGTGACAGACAGTCGAGTCATCATCAATGTCAGCGGAAAGATATTTGAA
ACCAACCAATCAACACTTGATCGCTTCACAGATACACTTCTTTCCAGTGA
CAGTCAAGACCGAAAAAGATACTACTGCGAAAAACAGAAGCAATTCTTTT
TTAACAGAGACCGCAACAAATTTGAAGCTATCTTGTTCTTTTATCAATCA
TGTGGAAAACTCTTTTTGCCACCGTTATGCTCCCTTGAAGAATTTATTGA
GGAATGCGAGTTCTTTCGTCTACCAAGAGCAGCTATCGATCTTCTGAAGC
TTTTAGAAGGTGCAGAGCTcatgcaaaatgtcaaaaatgccAGCCGATCA
TTGCGGCCACCTCGAGCCAATACCTACTTAAATAGAATACGCAACATGCT
CGATTATCCAAACTCGTCTATACCTGCTATACTATACTTCACGATGTATT
GTCTGCTTATTGTTGTCTCGATTATTAGGTATTGTATAGAAACTCTACCT
GGAAGCACTATCGACCAGAATCTTTATTGGACTTACTTTGAAATAGCTGG
AAGTGGTTTCTTTCTACTAGAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13248MSTRG.13248Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13248.1.p1.exon1MSTRG.13248.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13248.1.p1.exon2MSTRG.13248.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13248.1.p1MSTRG.13248.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104_pilongenomesc0000104_pilon:363019..366749 +