TCONS_00013046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013046
Unique NameTCONS_00013046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013046 ID=TCONS_00013046|Name=TCONS_00013046|organism=Clytia hemisphaerica|type=transcript|length=460bp
ctAAACTGATCATGGtgtaacttttcaaaaaacatgtTCAGCTCAAATCA
GGCATCGTCGATATTCGAAACGTGGCTACTATTGAAAAAATGTATATAAG
TTACGATGCACTTCccaaaaattatgataaaatttgatcaaGCGAGTGTT
CAACAAAATATAAGCTTAAGCCTCTCTTCGACTCGGCTGATATTTTTAAG
GTAAATTTGACCTGCATTAGACAAAAGGTTCTGAAATATTTTGGTCAAGC
AAGCAAAATCTGCTACGTATCACGCATCAAACGATCGTCTTGCTCTTTTG
ATAATCTTCTGTCATTATGGGTTTAATGCATTCCGTTTTCAAGAAATTTC
ttggtttaaaaaaagatgTTCGTATTTTGTTGGTTGGGTTAGATGCTGCT
GGTAAAACGACAATTTTGTACAAATTGAAATTGGGAGAAATGGTGACGAC
AATACCTACT
Run BLAST on NCBI

transcript from alignment at sc0000161:31359..31818

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013046 ID=TCONS_00013046|Name=TCONS_00013046|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0000161:31359..31818 (Clytia hemisphaerica)
AGTAGGTATTGTCGTCACCATTTCTCCCAATTTCAATTTGTACAAAATTG
TCGTTTTACCAGCAGCATCTAACCCAACCAACAAAATACGAAcatctttt
tttaaaccaaGAAATTTCTTGAAAACGGAATGCATTAAACCCATAATGAC
AGAAGATTATCAAAAGAGCAAGACGATCGTTTGATGCGTGATACGTAGCA
GATTTTGCTTGCTTGACCAAAATATTTCAGAACCTTTTGTCTAATGCAGG
TCAAATTTACCTTAAAAATATCAGCCGAGTCGAAGAGAGGCTTAAGCTTA
TATTTTGTTGAACACTCGCttgatcaaattttatcataatttttggGAAG
TGCATCGTAACTTATATACATTTTTTCAATAGTAGCCACGTTTCGAATAT
CGACGATGCCTGATTTGAGCTGAacatgttttttgaaaagttacaCCATG
ATCAGTTTag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007298XLOC_007298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013046-exon-sc0000161-1491911889:31359..31818TCONS_00013046-exon-sc0000161-1491911889:31359..31818Clytia hemisphaericaexon
TCONS_00013046-exon-sc0000161-1510915933:31359..31818TCONS_00013046-exon-sc0000161-1510915933:31359..31818Clytia hemisphaericaexon
TCONS_00013046-exon-sc0000161-1575043694:31359..31818TCONS_00013046-exon-sc0000161-1575043694:31359..31818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:31359..31818 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.480116	0	0	0.150624	0.181722	0.510378	0.714655	2.0655	5.44168	2.82406	2.72613	2.05012	0.401303	0.258396	0.848861	0.217514	4.5076	11.3205	6.2864	3.59955	1.29651	4.86221	0.455269	9.20986	3.87626	2.27527	22.9049	6.87306
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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