MSTRG.13536.1.p1 (mRNA) -

Overview
NameMSTRG.13536.1.p1
Unique NameMSTRG.13536.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000108_pilon:304792..307046-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13536.1.p1 ID=MSTRG.13536.1.p1|Name=MSTRG.13536.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2255bp|location=Sequence derived from alignment at sc0000108_pilon:304792..307046- (Clytia hemisphaerica_ch_hm2_pilon)
TTCTTAATCCTAAAAGCTCACGGCTACTTGAATTAAGAATTTGATCGACG
GTGTTTGATACATAAACATGAACTTTGTCATAATACAAGATTATGTAACT
TCAAATGCAGTGTATAAAAGTCAGGTTTTTGTAGACTGAAAGAACAGTGA
AATCGCACATATTCAATAACGTCGAAAGAAGTTGAAAGAGTTTTCTATTG
TTGGAAAAGGTAAGGCAAAATCGATTCTTATATTGGATTGAATGAGGTAG
ACTTTTAGAACGGTTTTTGGCAATGGGGATAGATATTACCAAAGATATTA
CAAGGTCCTACATGAACCCTGCGCCCTGCAGACCTTCAGTTCATGCAACC
AAATTTACGCAATTTCTGTTCACACAAAGTTTTCCAATTCACGCATTCAC
GCAGCTTTTTTTTAATTTTCACGCATTCATACAAGTGAAAAGCCCTTTCA
CGCAATAAACCGTTGGAGGGAGGGGGCCCTACATCACAAGCCTGGTTAGA
TATTGGACTAAATATCCGCCGTTAAAATGTGACTGTTATCTCCTTATGGA
AGCAAGATGCCCATAGAACGTGTATCTATCAACAACCCTTGCTTTTGAAG
CGTGAATGACTTATAAATTATGTAATACCTAAATTTTTATGTAAGTTATG
CTTTTAATCATCAAATCATAATAATTACATAAAAATTGTCTTTCCAGCAG
AACATTGGGATATAAATCAAAAACAAGAAGATGAGATTGATAGCATTCAT
CGTGGTTTTGTGTTTGTGTTCAACACGGTTAGAAGCTAAACCAAATTTCT
TCAAAAACATGTTAGGCAAACTCCATAACGCAGTGAAAGAAGTAGTTGGA
GACAAATCCGAACGTGAAGATGGTAAACCATGGTTTTGTCATGATTTGGA
CTGTCCAGAATTCAAAGTTGTCCGAAAGATCACAGTCAACGATGATCTGG
AAATTGAAGAGAGATGCTATCCTGAAACAACTTGGGTTCAAACAACAATG
AATGGTGACCGCCAAAATTTAAGTAAGTTTTGCATTAGTAGTCATTCTTT
TTTTTGACAAGTGCGGTTGAAGGGTTGAATACAACCTAAGGGAACACCCC
TGTCTCCCACTCCAGTGGGACTTCTTCCATAGTGGGGAGGAGTGCATTTT
ATTTCTATTCCATTTCATTTGGGGATGAAAACAAAGTCAATTTTTCGTGT
GGTTGTAATTTTATTTTTCTCACCAAGGGGACAAAGTTTGACCAAATTTT
CCAATGGATAGGGCGCTCGGGTAACTTAATGCATGTCCCAGAATTGCATT
AATTTTTACGCCCCAGTTCCAGTCCCTAAACCATAACAAACTATAGTTTG
TTATGGTTTAGGGACTGGAACTGGGGCGGAAAAATTAATGCAATTCTGGG
ACATGCATTAAGTTACCCGAGGACCAACTGGTCTGTGACAAAGGGGTGTA
AGGGTTATTAAGTACTAAAAAGTTTTCATTCTTTCCTCTCAGAATACTAC
ACCATGTTCCAAAAACTTTTCGCCTACATTCAAAAAGACGAAAACGTAAA
GAAAGAGAAAATCGAAATGACTGCACCAGTCCTTGTCTCCGTCACTGACG
TAAACGACGAAACAGTTAACGCCCAAATGGGATTCTTTGTACCACCCGCT
GAAGAATCAACCGCCCCAGCACCCACCCGTAAAGATGTCAAAATCGGTAG
TAAAACTCCAATGTGCGTTTATGTTTACTCCTACGGTGGATGGCAAATGA
ATTTGGACAACAAATTCTGGAAAAATGTCAATATTTTGAAAGACGGATTA
AGAGAGGCTGGTGTTACGGACTTTGATGAGAGCGCCGGAGCTATGTTCGC
TGGGTATGATAGCCCATTCAGAGTTTTTAACCGTCACAATGAAGTAATGG
TATTGAAGAAACCAAGTGAAGAAATCAAAGTTGAAAACAAATCTTCGTAA
ACTTTCTTATTTAGATTTTAAATTTAAGATTTACTCTTTGGGGTGATATG
ATGTGTTATTTCTGACTACGTTATATGCTCCACACTCTAGCATTGACAGA
GAAAATCGGTTTTCCTTTGACAAGACACTATTTAGATCTCTATAAGAGCT
TGACGAATATTCCTGTTTTATGAATGTTTTCCTGAATATTTTCGTTTTTA
ATTTTTGTATATTATCGAGAACTTTTATTTTGTAAAAAAAGACAGAATAT
AAACCAACTCTCTTTCATCGTTCGATCACACCCTTTTATTTAATCTGAGG
TGAAT

Coding sequence (CDS) from alignment at sc0000108_pilon:304792..307046-

>MSTRG.13536.1.p1 ID=MSTRG.13536.1.p1|Name=MSTRG.13536.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1500bp|location=Sequence derived from alignment at sc0000108_pilon:304792..307046- (Clytia hemisphaerica_ch_hm2_pilon)
AATACTACACCATGTTCCAAAAACTTTTCGCCTACATTCAAAAAGACGAA
AACGTAAAGAAAGAGAAAATCGAAATGACTGCACCAGTCCTTGTCTCCGT
CACTGACGTAAACGACGAAACAGTTAACGCCCAAATGGGATTCTTTGTAC
CACCCGCTGAAGAATCAACCGCCCCAGCACCCACCCGTAAAGATGTCAAA
ATCGGTAGTAAAACTCCAATGTGCGTTTATGTTTACTCCTACGGTGGATG
GCAAATGAATTTGGACAACAAATTCTGGAAAAATGTCAATATTTTGAAAG
ACGGATTAAGAGAGGCTGGTGTTACGGACTTTGATGAGAGCGCCGGAGCT
ATGTTCGCTGGGTATGATAGCCCATTCAGAGTTTTTAACCGTCACAATGA
AGTAATGGTATTGAAGAAACCAAGTGAAGAAATCAAAGTTGAAAACAAAT
CTTCGTAAATGAGATTGATAGCATTCATCGTGGTTTTGTGTTTGTGTTCA
ACACGGTTAGAAGCTAAACCAAATTTCTTCAAAAACATGTTAGGCAAACT
CCATAACGCAGTGAAAGAAGTAGTTGGAGACAAATCCGAACGTGAAGATG
GTAAACCATGGTTTTGTCATGATTTGGACTGTCCAGAATTCAAAGTTGTC
CGAAAGATCACAGTCAACGATGATCTGGAAATTGAAGAGAGATGCTATCC
TGAAACAACTTGGGTTCAAACAACAATGAATGGTGACCGCCAAAATTTAA
AATACTACACCATGTTCCAAAAACTTTTCGCCTACATTCAAAAAGACGAA
AACGTAAAGAAAGAGAAAATCGAAATGACTGCACCAGTCCTTGTCTCCGT
CACTGACGTAAACGACGAAACAGTTAACGCCCAAATGGGATTCTTTGTAC
CACCCGCTGAAGAATCAACCGCCCCAGCACCCACCCGTAAAGATGTCAAA
ATCGGTAGTAAAACTCCAATGTGCGTTTATGTTTACTCCTACGGTGGATG
GCAAATGAATTTGGACAACAAATTCTGGAAAAATGTCAATATTTTGAAAG
ACGGATTAAGAGAGGCTGGTGTTACGGACTTTGATGAGAGCGCCGGAGCT
ATGTTCGCTGGGTATGATAGCCCATTCAGAGTTTTTAACCGTCACAATGA
AGTAATGGTATTGAAGAAACCAAGTGAAGAAATCAAAGTTGAAAACAAAT
CTTCGTAAATGAGATTGATAGCATTCATCGTGGTTTTGTGTTTGTGTTCA
ACACGGTTAGAAGCTAAACCAAATTTCTTCAAAAACATGTTAGGCAAACT
CCATAACGCAGTGAAAGAAGTAGTTGGAGACAAATCCGAACGTGAAGATG
GTAAACCATGGTTTTGTCATGATTTGGACTGTCCAGAATTCAAAGTTGTC
CGAAAGATCACAGTCAACGATGATCTGGAAATTGAAGAGAGATGCTATCC
TGAAACAACTTGGGTTCAAACAACAATGAATGGTGACCGCCAAAATTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13536MSTRG.13536Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13536.1.p1MSTRG.13536.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13536.1.p1.exon3MSTRG.13536.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13536.1.p1.exon2MSTRG.13536.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13536.1.p1.exon1MSTRG.13536.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108_pilongenomesc0000108_pilon:304792..307046 -