MSTRG.14892.1.p1 (mRNA) -

Overview
NameMSTRG.14892.1.p1
Unique NameMSTRG.14892.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000127_pilon:499999..504768+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14892.1.p1 ID=MSTRG.14892.1.p1|Name=MSTRG.14892.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4770bp|location=Sequence derived from alignment at sc0000127_pilon:499999..504768+ (Clytia hemisphaerica_ch_hm2_pilon)
TTATGTCATAAAGAGACACTGTGCTGTTAAAAAGAGATGGTGAGGTCGAG
GAGACatttttctccttcttttaataattttctatttttctaatGTCCGT
GTATGAGATGAGAATGTgaattaatcaaatttttttgaaatttatgtcTA
AGACgcttatttcaattttcatcatTCCATCTTATTGATTATACTATCCA
TGAGTTTTGAACGTTGCTTAATCCATATATAAGAGGTTTAACTTCTAGAC
TTCAAAGAAAGTTAAGACATTTTGGGAAAGAGAGCCTGATATTTATTGTA
AACACATTACAAAACATATACGAAGTTTTTTAGTTTGCTTGTTGGCTTTA
GTGTCAAGCTGACGATTAAAGAAATGATAAAGATATAAAGAAAGAGAGAG
ATAGAGGAAAATGGATGATCTGAAATACAAACTATGGCATATTTTGAACA
AAACAATAAGTTGACATTTACTAAGAGTTTTCAAGGGCTTAGAAAACATT
GTTATAAATGTATCTTGATATTATTACTGGTAACTTTAGTACTGTTTGTT
GTTGTGTCGACTATTCAAAATTGGTTTACAGTGACCTTGAATTGTCAACC
TTCTCAAAATGGAACTGTTAACATGGAACATGATGTCGTGTTTGGAGTTA
AAGATATATGCATCACGAGGAATAAAACAATTGCTTGCAGGGATATAGCA
GATTTTCACATACCTGGAACCATACGTAAGTTAATATATCCAggatttat
actttttttataagaacataatgcttctgtggccaaaaacttaagaataa
gttaagaacactttaaggcattacactttcttttttataagagcatccaa
aatttttgaagcctttggatgttcttaactttttgagttttaagcctaaa
aatattcttaacgtgttcttataattttccgattttgtgattattttggt
ccatttccctaagaaataaggtgttttagagtctgcgaagcctttaaatg
ttcttaacttgttcttaacttggccatcgaagccttatgttcttatatag
tttgttttataaaaaagacatgtatggacttaaaaaaaccgattttttag
gaaaatggaaaaaaataatcaCATTATGatgaaagtaagaacatgttaaa
attatttctttaaaactcGTAAAGcttagaacatccaaaggcttcaaaaa
tctttggACCCCAACCCTCTGGAAAATTAGGCTTAAATTTCGTCCACGGT
AGAAAAAATACCATTTCATTTCAGCCCcaattgaaaattgactttgaatt
catcatcatttgaatttcaataaaaaaattgcaatctccaaaaccatcct
catTGGtttttttgagctggaaacaatgGAATTTCTATATCCCCTTAGCC
CCCATTTATATCTGTATAAAATTTTGTCTCctctgtgggaaaaagttcca
ccggggctgtgagataggGGGTGTACCACTAATGACGTTTAGCAATCAGT
CTGCACTTTCACGACAGCTTGGCTCCAAAGTGACGTATTCggtattaaaa
acaaaaaaaattatataatttcATCTGAAATGATTGTAGTTTTCTGATCA
GGTCAGTGCAACAGGGATATAGCAGTTATCAAACAACTTGAACTTTGCAG
AAAAATCATTGTTAATTTAACATTTAATGCTTTTAATTGGTTAATTGTGT
AATTAAGAATGGATTAACATACACAtttattcaaagatttttaattgCGA
TCAACAGACAATCGAGCTTAAAAATACCTCAGCTTTTATTGATTTCAAAT
CGTCAATGTATAGGTTGTATAGACCCATagaccattgacttccaagccgg
AAGGGCTAGACTTGAGACTCCTGGATAGAAATGAAGCCCTAATGAAGCCA
CTTTATTTCCCACAAAcgcaaacgccggattgaaagtaaaatctatcgct
agatttcaaaaaatgcagacttcaaaaacaaaaggagccactagatacaa
tccgtcgttaTGATCACAACGCGTTCTAAACGCGCTCTGGATggtgggaa
ataagtggcttcacttgttcttgcctgagaaaggttagagattctactct
tgcctttcgggctttaaactcaatgccaTAGACAGTATAATCCGTGTGTC
ACTAATACAGCTTCAGACTGGATGTATATTGTCAAGGTATATTACTTGAA
TTCAGATATATGCTGAAAAACGCCAACAATGAGTCTGCTACGAGATTATT
GCCTCTCTTTTATCCATAAGAGATGCACCAAATTAGGTAACAAGGTCtat
gaaatcttttttcatttcagcaatggACGATACAAAGAAGCTTGTGGTTT
TAGCCATCGTCTTCAACACGTTTGCTTTACTCCTGGCATCAAGCACCACC
TACTGTAGCCAAGGCTTTGCAAAAGCATCTGTCACTTACATTACATTGGG
ATGTTTAGCTCTGGCAGGTTAGTAGTACTCAACCAACTGCAATCCCACAC
AAAATATTGGAAACAAACGGGATTTccctgtgaaattttaaacatcacaa
atgatttttaagcacgTTAAACTAGAGTTGGAaattagagttttaactct
gagttttaacacgagACTTAAGTCTTAAGGCCTTAGGATCTCAGAATTTA
AAGGCTCAAAATTGTTTCGATCAGGCTTGGAATACAGCCTAGAAGCCATC
AAaccccttaaaaataaaaatattcaatggaagaaagtggaactgctaaa
atagcaattctcgcccgaactttaaattctgaaaaacgttaaaatacact
aaagtctcaatatatttcgagcaAGATTGTGGTACAAGAAATATCAAAGC
AACACTGCCCATCTAACACGTCCCTAACGCCAATTTAATTCAATATAAGG
TCTACCTTATCCGCCCTGTTTACACctgcccttattggcgttatttttag
gtTCTTGatgtaataagggccggcgtacaAGGGACCGACGTTAacttagg
gccggcgtaaaaagggccgataaggtatataacATCCATATAATGCATAA
AGTCAGGGAAAGTCATGACAGCAACGTTCTATGAAATCTGGTACATTTTT
GGTTATAAACTCTATTGAATGCCCTTCCCCGCCCTTCTTCGTTAGTCTTT
TCGATTGTAAGGTTATTTGTTCAACTTCCTACATAGACACTGCTATGTCt
aagacccgctgggaccccagcccatcTGGAAAATTTAGCCGAAATTTCCT
CTGAAATTCCTGCCCAactaggaaattgactttgatttaatcCCCATTCG
AAGtactctaaaaccatccccactggatttatTAATCTCCATCAGACTTC
CAATAGAAGTTATTATCCCCACTGATGAAAcaagttagggttagggttag
ggttagtgtAATTTGAATCAAAGCCTTATTGTTACAGCTACCCTTACACT
ACCCTTTTATACTCGAACCAGGCCCTCAGTGGTGTTTAGGATTGATAAAC
AAACTTGCAGTGGTGAATCATAGTTTAAGGAAGCTGCGACAGTAATGTGT
ACTACATTGTCttcaaaccaataaaatttatcattaaagatgctacatta
ctggtTTCTTGATCTACAAATaatcatcaaatacgacagagatagaacac
cagaaattcaaatgttatcattccagccgcggctttttTATACTATGGGT
GAATAAATGACAACTTTCTTTACCCAgttatttattttcagttgtTAGCG
CGACGTATGGTCTCCAAGAAGCTGAGAAACATTTCGATGGTCACGTGATT
GAAGTTCTCAAAATATACTTGGGAATGGAAAATAAATGCAGTATAGCTAA
TCTTCGACGAGGGTTCTGTTTCAATGTTATGATTTCGTCTACTATATTAT
TATATATGGCTTTACTGATGTATGTAATTGAATGGAAGTACCCTAAGAAA
GAAGAGATTATACCGCAAAGTAATGCTGAGAGATTGGCGCGTTATAGGCT
AATGAGTCATATATCAGGACAGTCTGTATTTTTATAGGACTAAGTTTTTT
GATAAAACTCATAACGATTAAAAAACTACTTGCAGAGATTTTCTATGTGA
AGATAATTTAAAATCTAGAGCATAAAGGACCTGAGCTCCGATAAATTTAT
AAGAGACAGTTATATGTACTTTTGATCAAGTCCATTTTTGACCAAGACTT
TCCCTGAAAATATACCCGGGGGAGAGGCACTTGATTCGAAAAGGACCTAA
TGTGCaacccaaaattaggcctttgaaatcaaAACCTTACAACCCAGAGA
ACATTTAACCAAagttgagtaaatttgggcgaaaaatcgaGCGTTACGGT
gccttttcttgaaaatttttgaccattttaaggcaaaaaaattcattttt
cctcatttcgacccttacagtacaacttggaaaagggacccttaagggcc
gcacgtacggtaggtcgttcaCCCTGAGTGCCTCCTCTCCGGGATATTAA
ACCAATAAAGAAATCTATCAGGAgttatctttttatattgatcaaattca
tatatttttgaaaagcctGGCTTCTATATCAACACTgcgaaaatatttgt
tgaatACCATAGtatatttttagtgacaatgttttccaaatgaattttag
gtattattttatagatgttttttatttgaaaatttatagaGATCTTTATG
TAATATTAATTAtcttaaagaaaaattgtacAGGTAAATTagaatttaca
aataaaatagAAGCAAAATA

Coding sequence (CDS) from alignment at sc0000127_pilon:499999..504768+

>MSTRG.14892.1.p1 ID=MSTRG.14892.1.p1|Name=MSTRG.14892.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2205bp|location=Sequence derived from alignment at sc0000127_pilon:499999..504768+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCATATTTTGAACAAAACAATAAGTTGACATTTACTAAGAGTTTTCA
AGGGCTTAGAAAACATTGTTATAAATGTATCTTGATATTATTACTGGTAA
CTTTAGTACTGTTTGTTGTTGTGTCGACTATTCAAAATTGGTTTACAGTG
ACCTTGAATTGTCAACCTTCTCAAAATGGAACTGTTAACATGGAACATGA
TGTCGTGTTTGGAGTTAAAGATATATGCATCACGAGGAATAAAACAATTG
CTTGCAGGGATATAGCAGATTTTCACATACCTGGAACCATACcaatggAC
GATACAAAGAAGCTTGTGGTTTTAGCCATCGTCTTCAACACGTTTGCTTT
ACTCCTGGCATCAAGCACCACCTACTGTAGCCAAGGCTTTGCAAAAGCAT
CTGTCACTTACATTACATTGGGATGTTTAGCTCTGGCAGttgtTAGCGCG
ACGTATGGTCTCCAAGAAGCTGAGAAACATTTCGATGGTCACGTGATTGA
AGTTCTCAAAATATACTTGGGAATGGAAAATAAATGCAGTATAGCTAATC
TTCGACGAGGGTTCTGTTTCAATGTTATGATTTCGTCTACTATATTATTA
TATATGGCTTTACTGATGTATGTAATTGAATGGAAGTACCCTAAGAAAGA
AGAGATTATACCGCAAAGTAATGCTGAGAGATTGGCGCGTTATAGGCTAA
TGAGTCATATATCAGGACAGTCTGTATTTTTATAGATGGCATATTTTGAA
CAAAACAATAAGTTGACATTTACTAAGAGTTTTCAAGGGCTTAGAAAACA
TTGTTATAAATGTATCTTGATATTATTACTGGTAACTTTAGTACTGTTTG
TTGTTGTGTCGACTATTCAAAATTGGTTTACAGTGACCTTGAATTGTCAA
CCTTCTCAAAATGGAACTGTTAACATGGAACATGATGTCGTGTTTGGAGT
TAAAGATATATGCATCACGAGGAATAAAACAATTGCTTGCAGGGATATAG
CAGATTTTCACATACCTGGAACCATACcaatggACGATACAAAGAAGCTT
GTGGTTTTAGCCATCGTCTTCAACACGTTTGCTTTACTCCTGGCATCAAG
CACCACCTACTGTAGCCAAGGCTTTGCAAAAGCATCTGTCACTTACATTA
CATTGGGATGTTTAGCTCTGGCAGttgtTAGCGCGACGTATGGTCTCCAA
GAAGCTGAGAAACATTTCGATGGTCACGTGATTGAAGTTCTCAAAATATA
CTTGGGAATGGAAAATAAATGCAGTATAGCTAATCTTCGACGAGGGTTCT
GTTTCAATGTTATGATTTCGTCTACTATATTATTATATATGGCTTTACTG
ATGTATGTAATTGAATGGAAGTACCCTAAGAAAGAAGAGATTATACCGCA
AAGTAATGCTGAGAGATTGGCGCGTTATAGGCTAATGAGTCATATATCAG
GACAGTCTGTATTTTTATAGATGGCATATTTTGAACAAAACAATAAGTTG
ACATTTACTAAGAGTTTTCAAGGGCTTAGAAAACATTGTTATAAATGTAT
CTTGATATTATTACTGGTAACTTTAGTACTGTTTGTTGTTGTGTCGACTA
TTCAAAATTGGTTTACAGTGACCTTGAATTGTCAACCTTCTCAAAATGGA
ACTGTTAACATGGAACATGATGTCGTGTTTGGAGTTAAAGATATATGCAT
CACGAGGAATAAAACAATTGCTTGCAGGGATATAGCAGATTTTCACATAC
CTGGAACCATACcaatggACGATACAAAGAAGCTTGTGGTTTTAGCCATC
GTCTTCAACACGTTTGCTTTACTCCTGGCATCAAGCACCACCTACTGTAG
CCAAGGCTTTGCAAAAGCATCTGTCACTTACATTACATTGGGATGTTTAG
CTCTGGCAGttgtTAGCGCGACGTATGGTCTCCAAGAAGCTGAGAAACAT
TTCGATGGTCACGTGATTGAAGTTCTCAAAATATACTTGGGAATGGAAAA
TAAATGCAGTATAGCTAATCTTCGACGAGGGTTCTGTTTCAATGTTATGA
TTTCGTCTACTATATTATTATATATGGCTTTACTGATGTATGTAATTGAA
TGGAAGTACCCTAAGAAAGAAGAGATTATACCGCAAAGTAATGCTGAGAG
ATTGGCGCGTTATAGGCTAATGAGTCATATATCAGGACAGTCTGTATTTT
TATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14892MSTRG.14892Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14892.1.p1MSTRG.14892.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14892.1.p1.exon1MSTRG.14892.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14892.1.p1.exon2MSTRG.14892.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14892.1.p1.exon3MSTRG.14892.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127_pilongenomesc0000127_pilon:499999..504768 +