MSTRG.14088.10.p1 (mRNA) -

Overview
NameMSTRG.14088.10.p1
Unique NameMSTRG.14088.10.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000116_pilon:86077..89103+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14088.10.p1 ID=MSTRG.14088.10.p1|Name=MSTRG.14088.10.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3027bp|location=Sequence derived from alignment at sc0000116_pilon:86077..89103+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTGTCCCTTGGAGAAATCTACTTTAAAGACCGGAACAAAATCTGTCAAA
GACTGctatagtaagtgaaaagaaTCTGTTAGGGAATGAGTCAGTAAAAT
ACACCACTACAAGAAGATTTCGGACAGTCAACAAGTAAATATGGAAAACT
TTAGACATTGTACACGATAATAAGTTTACACGTGCCTCTCCGACTGTCAT
AGTTGATCTCCCCCAGCTCCTGGACTATTAGTGAATGAGTTTGTTTTCCT
TATCGATTGAGGTCATTAAGCACGTCTTTGAACCTTGGTTATCGATTAAA
TCTACCCCATAACTACCCTCATCTGTCAAAGAAGGCTATTATTAGTAAAC
AACTGCATCTCTTACAACCTCTCTCTTGTTCAAGATTAAGACTTTTCAAA
TTAAGAATTTGGTCACAACTTCATTGAGTTTGTGACACTCAAACACCCAA
AAGAGAAACAACGCTATAAGAGCTGGCATTTACGATAACTCGGTTTTAAA
AATAGATCTATTTTCAATCCCTTGTTCAAGAATGTAGCTTGGCTGCTAGA
TGTCTCGACCACTTTAGATATGCCCAAGTTCAGGAATTTCCGTTGTTGAG
GACGGCGGTGTGACTGAAGAGATTTGGAAGAACCCGCATTTCTGACCCGA
AAAATCGAGGACgataaaattgttaatttatCGTCCTTTTTTGTTGATCG
GGATCTAGAGAAATGAGAACTTTACCGTCCCTGtcgcaaaaaaaaacaca
tacgcaaatacataaacttcgCTATTCCTTTCAAGATTCAACTCCAAATA
GAACTTAGCCTAGGAATCCAAGTGGTAACTTTGTTCGTGGTCTTTTCCtt
ttaattctaaaattttgagcttggattcccaggctaaataGTATTCATTA
ACTGTCAATCTTCTGCCAAGAGCcatttgaacaacttttttgattttacc
gTTTAACATATGACTCAATGGTGAGCACACTGatctttatatatccctgg
accaagctatatccgtcatctttgattgaagtttttattgaaatcggtac
ccgagaagaagccattgtagtgtttgaaactttgcctagcGACAAACGGC
GTTACATCATTAGCGTTCAAGCAAAactagacctagcgctctctccgcgg
gtaccaatttcaaaaaaactccaatcaaaatattttgcttggccggCATT
GAGTAACGTGGTCCAGGGATACATAAAAgtcagtgggtgaGCACCTGTCA
GAATCAGATTTATTGatggtttcattttttatctacaGACCAATGTTTGC
CAGGCAGTTATTCATCCACCGGGTTAGACCTTGCCAACGAAAAATGTGCA
CTGTGTCCTAAGGGAACTTTCTCATATCTTCATGGATCAACAGAATGTAC
TGTTTGTCCTGGACAATCAACAACAGATAAAGAAGGAACTGCATTGGAGT
CTAAATGTACAGGTTAGTGagtttctattcatgatatgcaccattgcaat
gtcttctggcataacatcacggacccaatagctgaatggttgcaagtgac
gtaaaattaatcagtacgtcactttcaaccaatcatctgttggatccgtg
gaagacattgcaatggtgcatatcatgaatttataTTTGATTGAGTTGAG
TTGCAGCACTGCAATGTCTACTAGAATCAATGTCTTCGACATCACATCAT
AGACCCAGCACCTATCCTCGTCTTAACCTGCATCGAGTTCCTCAGCACCT
ATCgatccgtgatgtaatgttagaagacattgcaatggtctATATCATGA
ATTAGGTTGAGTTGCAGCTGGTTTTGAGGCCAATTTTCCCACCTATAAAC
GCTCAtttttttCGActgagaaaattagttccctttaagGTATTGTAAGC
ATTGTCTTGTTTACCCAGGTTTGACAAACCGATAAGCTTTTTAATATAGA
ATTCTTTGAATTTTCGTTCTTCCCATAGCTTCACTCTCCATCGTTGGAAT
TTTACCGCTTGGTCCAAACGTCTCTGTCAAAAGGAATTTCGAATTACGTT
TATCGTGTTATTTTGAAGGCTCGCCTGTTCCTGATGCAACGTGGCTCAAA
GAAGGAGGTATAATTTacagacccagatagacagacagacagacagacag
acagacacatagacagacagacagacttATAAACCACCCTAACTGTTTGA
GTGttttcatacacgttttttataagaacatccaaaatttttgaagcctt
tgaaaaatgttttatttcagtcctaaaaatgttcttagcatgttcttatt
ttcaccatttttcgagcaattttgtccattttccaaagaaattgggtgtt
ctaGAGTCCCCAAAactgttcttagcttgttcttaacattttggccatca
agccatatgttgttatatagtttgttcttataaaaagaaaacgtgtaatc
TCTTAAATATTGATTCTAGGAAATTTGCCCCGAGTAATTTCCCCTTTGGA
AAATTGCCCTCCTCTGttttttttGCTCGCTCCTCCAGACAATTACCCAG
ACTCTCAGAGTTTATGATTTTCCTTCGGTACTAACAGAAGACTTCATTGA
TACTATAGAATCTTTCTTTTCAGGCAATTTACCAAATTCTCACCGTCTCG
AAGAATTATTTGATATGCATCTAATCAAGATTGGAATTTCATTAGTTGTA
CCTTCAGTTAGTACTCGCGACGCTGGAAAATACACGTGcattgtcaaaaa
taaaaatggcaaCGACCATCGGGCCGTCAATGTCAAAGTTGTTTAAGACG
TCACAACGGCTGCCGGGCCGTTCAGTTGATCATTCACACAGATTGTTGGG
CCGCTGAATTTGTTGGCACAATCATTTctgtgttttatttttacaaaaca
cATATTTTATTTCCTTTATGTAATTTATATGGGTGGGGTAAAttggaaaa
atataattatCGTGTAACAATACAATAAAATCAATTGCTTTTAGATTTTA
ACATGGcaggctattccagaaaaaaaa

Coding sequence (CDS) from alignment at sc0000116_pilon:86077..89103+

>MSTRG.14088.10.p1 ID=MSTRG.14088.10.p1|Name=MSTRG.14088.10.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2136bp|location=Sequence derived from alignment at sc0000116_pilon:86077..89103+ (Clytia hemisphaerica_ch_hm2_pilon)
TGTCCCTTGGAGAAATCTACTTTAAAGACCGGAACAAAATCTGTCAAAGA
CTGctataACCAATGTTTGCCAGGCAGTTATTCATCCACCGGGTTAGACC
TTGCCAACGAAAAATGTGCACTGTGTCCTAAGGGAACTTTCTCATATCTT
CATGGATCAACAGAATGTACTGTTTGTCCTGGACAATCAACAACAGATAA
AGAAGGAACTGCATTGGAGTCTAAATGTACAGCTTCACTCTCCATCGTTG
GAATTTTACCGCTTGGTCCAAACGTCTCTGTCAAAAGGAATTTCGAATTA
CGTTTATCGTGTTATTTTGAAGGCTCGCCTGTTCCTGATGCAACGTGGCT
CAAAGAAGGAGGCAATTTACCAAATTCTCACCGTCTCGAAGAATTATTTG
ATATGCATCTAATCAAGATTGGAATTTCATTAGTTGTACCTTCAGTTAGT
ACTCGCGACGCTGGAAAATACACGTGcattgtcaaaaataaaaatggcaa
CGACCATCGGGCCGTCAATGTCAAAGTTGTTTAATGTCCCTTGGAGAAAT
CTACTTTAAAGACCGGAACAAAATCTGTCAAAGACTGctataACCAATGT
TTGCCAGGCAGTTATTCATCCACCGGGTTAGACCTTGCCAACGAAAAATG
TGCACTGTGTCCTAAGGGAACTTTCTCATATCTTCATGGATCAACAGAAT
GTACTGTTTGTCCTGGACAATCAACAACAGATAAAGAAGGAACTGCATTG
GAGTCTAAATGTACAGCTTCACTCTCCATCGTTGGAATTTTACCGCTTGG
TCCAAACGTCTCTGTCAAAAGGAATTTCGAATTACGTTTATCGTGTTATT
TTGAAGGCTCGCCTGTTCCTGATGCAACGTGGCTCAAAGAAGGAGGCAAT
TTACCAAATTCTCACCGTCTCGAAGAATTATTTGATATGCATCTAATCAA
GATTGGAATTTCATTAGTTGTACCTTCAGTTAGTACTCGCGACGCTGGAA
AATACACGTGcattgtcaaaaataaaaatggcaaCGACCATCGGGCCGTC
AATGTCAAAGTTGTTTAATGTCCCTTGGAGAAATCTACTTTAAAGACCGG
AACAAAATCTGTCAAAGACTGctataACCAATGTTTGCCAGGCAGTTATT
CATCCACCGGGTTAGACCTTGCCAACGAAAAATGTGCACTGTGTCCTAAG
GGAACTTTCTCATATCTTCATGGATCAACAGAATGTACTGTTTGTCCTGG
ACAATCAACAACAGATAAAGAAGGAACTGCATTGGAGTCTAAATGTACAG
CTTCACTCTCCATCGTTGGAATTTTACCGCTTGGTCCAAACGTCTCTGTC
AAAAGGAATTTCGAATTACGTTTATCGTGTTATTTTGAAGGCTCGCCTGT
TCCTGATGCAACGTGGCTCAAAGAAGGAGGCAATTTACCAAATTCTCACC
GTCTCGAAGAATTATTTGATATGCATCTAATCAAGATTGGAATTTCATTA
GTTGTACCTTCAGTTAGTACTCGCGACGCTGGAAAATACACGTGcattgt
caaaaataaaaatggcaaCGACCATCGGGCCGTCAATGTCAAAGTTGTTT
AATGTCCCTTGGAGAAATCTACTTTAAAGACCGGAACAAAATCTGTCAAA
GACTGctataACCAATGTTTGCCAGGCAGTTATTCATCCACCGGGTTAGA
CCTTGCCAACGAAAAATGTGCACTGTGTCCTAAGGGAACTTTCTCATATC
TTCATGGATCAACAGAATGTACTGTTTGTCCTGGACAATCAACAACAGAT
AAAGAAGGAACTGCATTGGAGTCTAAATGTACAGCTTCACTCTCCATCGT
TGGAATTTTACCGCTTGGTCCAAACGTCTCTGTCAAAAGGAATTTCGAAT
TACGTTTATCGTGTTATTTTGAAGGCTCGCCTGTTCCTGATGCAACGTGG
CTCAAAGAAGGAGGCAATTTACCAAATTCTCACCGTCTCGAAGAATTATT
TGATATGCATCTAATCAAGATTGGAATTTCATTAGTTGTACCTTCAGTTA
GTACTCGCGACGCTGGAAAATACACGTGcattgtcaaaaataaaaatggc
aaCGACCATCGGGCCGTCAATGTCAAAGTTGTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14088MSTRG.14088Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14088.10.p1MSTRG.14088.10.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14088.10.p1.exon1MSTRG.14088.10.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14088.10.p1.exon2MSTRG.14088.10.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14088.10.p1.exon3MSTRG.14088.10.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14088.10.p1.exon4MSTRG.14088.10.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000116_pilongenomesc0000116_pilon:86077..89103 +