TCONS_00012621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012621
Unique NameTCONS_00012621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012621 ID=TCONS_00012621|Name=TCONS_00012621|organism=Clytia hemisphaerica|type=transcript|length=2292bp
cctctccccccttcactgcgtaggTACTATGTGGGTGGCCCCTGTGCCAA
TCTACAAAAGCGTTCATATTGAATTAATTGTCTTCAAATCAAAGTTATcg
tcttttatttatttcagcACAAAAGAAATAGAATTACTAAAAAACCATTA
ACTAACGATTCAGCAAATGGTCAATATACAATgagtgaaaaaaactaaaa
tgacaAATCGAATATGTAATCAGCATATTAGGAATGTTTGTCCAATGCTA
TAATCAAGTATCTTCAACATGACATCTACGGAGGAGAGCAAGGATGTAGA
GTTTGACTATGGTGATGAATTCTTTACCAAATCAGCCCAAGATACTGTTG
AATCTCAAGATGCAGATCCTGCACAGCTGACAGAGACAAATACATCCGTC
GAGAGCAAAGAAGAGTTGAATCAAAACAGGATTGAGAATAAATTACCTGA
GTTAGAAATTACTGATCATGAACAAGATGTAATGAAATCTACTGGTGAAA
AACAAGCTTCCATCAACGATATCACATCGGAGCCTGGTGAATCACCAGAA
ACTGAGGAGGCCAGGGTTGAAACGAATGCTGAATCTGATGGTGAAGTTGA
TGAATGGGATGAACTGCAACTGGATCCTAAAAATTCTGCCGAAAATCCTG
AAAACATGACATCTCCAATGGAATTCAAAGAAGCTTTGCAATTCTTCGAA
AACATCGATCTCAACCAATACGCTGATAAAATACGAACAGCTCCAAAAAG
ATCTGGGATTTCTTCAGTCTTTCATAACATTGTTGGACCACCGAAACTTC
ACAAATCACTAGTCCCTGAACGCAATTTGATATTCACTCTAGCCTTGATA
CCATTTCAAAATGATGAACTGGTGCACGTTCGGATATTACAGACATTATA
TAAATCATTATCCAACAGGAAATTTGATTGTCCACGTTTTGGCCCTCATT
GGGAACTGATCGGGTTTCAAGGTAATGACCCTTCAACAGATCTCCGTGGC
TGTGGAATGCTTGGCTTGTTAACAACTCTTCACTTTGTTACATCATCTAA
CACCAAAACGCTAGCTTCAAACATTTATCAACTATCACGTCATGAGATTC
AAAATTTCCCTTTTTGCGTGATGTCTATCAATATCACACGCATCTCTTTA
CAAGTGCTTCGTAGTGGGAAAATTAACAAaGAGTGCAACCAGCGTTTAAA
ACAAAGACATAAATCGAAACAGAAATATACTAACGACATAGACCTTACGG
TTTACGATGTTTTTCAAGAACTTTACGAAGCCATATTCTACAAATTATAT
ACAGTTTGGAAGAACGAAGGAAAAACAATGACAGAGTCTGGTTTCGTCAT
AAGAGATATTGAAACATTAGCCAAACAAAAACCAATGGATTTATTGAAAA
ACTATAGGAAAAGACTTTCTTCTGAAGGAAGCAAGAAGAAAAATGGTGGA
AACCAGAATGAAGAGAAAATCGAATCCTTTGTAGGAATTGAAGACTTAGG
ATGAAGAACGCTTTTCACTAGGCAAAAGAAGATTCGATTTCTATGTTGAT
ATTGGTTGCCATGGTGAAGCACAATCAGCTGATCAAATTGCAATACAATA
TCAAAAGGACGATGACAACAATGCGCCATTATGGTTAAAAGTCTCGTCTT
ACCAAATAATAGTCAGTGTTGAGAAATGATGTTTAGCCGAGACAAAGATT
TAAATAACAATGGAGTACAGTACCGTTTACCGGCATATGATAAATTCAAA
ACGCTTAATGAACTTGAATATGAAAAACGTTTCACAAACAACAACCTACA
TTACGTCAACCCTTTACCACGTGATGAACAGACTTTCAGCGTAACAGGAA
AACGCATGGTTCAagtcaaagaaaatttgagtgaAATCCTAAAACAAATC
GAGAAAGAAACTTTAGAACGTTTACAACAATCGCTTGAAGAGAAAcatga
aaattttctaaaatcggaATACGATTTTCCACTGACGGTGGATGAACAAC
AGGACTCCGACGTTATGTCGGAACACGGAAACCGTGTGTACGTTCCGAAC
GATACTTATTACCGTGAAAAGGAAATTCAGGATGCAGCACAAAACATCAG
TTGTCGAATTTTGTTACGTTATAATCAACCAAATGAAAAGGATCAAGAAC
CACCAGATTTACAAAACGTCCAACCAAACGTTCAGGTGGAATCGAATAAG
CCGCTAGATGATTATTCTAGCGCAAAAGCAGCTTCAGCGAGAACACAAAA
TGAGAATGATGAAGATTATGAGATTCACgatttggaaagata
Run BLAST on NCBI

protein sequence of TCONS_00012621-protein

>TCONS_00012621-protein ID=TCONS_00012621-protein|Name=TCONS_00012621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
MTSTEESKDVEFDYGDEFFTKSAQDTVESQDADPAQLTETNTSVESKEEL
NQNRIENKLPELEITDHEQDVMKSTGEKQASINDITSEPGESPETEEARV
ETNAESDGEVDEWDELQLDPKNSAENPENMTSPMEFKEALQFFENIDLNQ
YADKIRTAPKRSGISSVFHNIVGPPKLHKSLVPERNLIFTLALIPFQNDE
LVHVRILQTLYKSLSNRKFDCPRFGPHWELIGFQGNDPSTDLRGCGMLGL
LTTLHFVTSSNTKTLASNIYQLSRHEIQNFPFCVMSINITRISLQVLRSG
KINKECNQRLKQRHKSKQKYTNDIDLTVYDVFQELYEAIFYKLYTVWKNE
GKTMTESGFVIRDIETLAKQKPMDLLKNYRKRLSSEGSKKKNGGNQNEEK
IESFVGIEDLG
Run BLAST on NCBI

transcript from alignment at sc0000146:145919..155223+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012621 ID=TCONS_00012621|Name=TCONS_00012621|organism=Clytia hemisphaerica|type=transcript|length=9305bp|location=Sequence derived from alignment at sc0000146:145919..155223+ (Clytia hemisphaerica)
cctctccccccttcactgcgtaggTACTATGTGGGTGGCCCCTGTGCCAA
TCTACAAAAGCGTTCATATTGAATTAATTGTCTTCAAATCAAAGTTATcg
tcttttatttatttcagcACAAAAGAAATAGAATTACTAAAAAACCATTA
ACTAACGATTCAGCAAATGGTCAATATACAATgagtgaaaaaaactaaaa
tgacaAATCGAATATGTAATCAGCATATTAGGAATGTTTGTCCAATGCTA
TAATCAAGTATCTTCAACATGACATCTACGGAGGAGAGCAAGGATGTAGA
GTTTGACTATGGTGATGAATTCTTTACCAAATCAGCCCAAGATACTGTTG
AATCTCAAGATGCAGATCCTGCACAGCTGACAGAGACAAATACATCCGTC
GAGAGCAAAGAAGAGTTGAATCAAAACAGGATTGAGAATAAATTACCTGA
GTTAGAAATTACTGATCATGAACAAGATGTAATGAAATCTACTGGTGAAA
AACAAGCTTCCATCAACGATATCACATCGGAGCCTGGTGAATCACCAGAA
ACTGAGGAGGCCAGGGTTGAAACGAATGCTGAATCTGATGGTGAAGTTGA
TGAATGGGATGAACTGCAACTGGATCCTAAAAATTGTAGGTGTATAGTTA
AACAGAAATTTACTCTTTCAATGAAATCAGAGTCCAATATcattatttga
aagtttcttagaaatttttcaaaatatcatatTCCTTTATTCACTAGATA
GGCTATAACTGCTCACATGTTTCTGTGTCAAAATCCACCCGTGCTCATTT
ATATTTTCCAAAATGACTTTTCAATCAAATTACTGCTTTTCTTTCAGCTG
CCGAAAATCCTGAAAACATGACATCTCCAATGGAATTCAAAGAAGCTTTG
CAATTCTTCGAAAACATCGATCTCAACCAATACGCTGATAAAATACGAAC
AGCTCCAAAAAGATCTGGGATTTCTTCAGTCTTTCATAACATTGTTGGAC
CACCGAAACTTCACAAATCACTAGTCCCTGAACGCAATTTGATATTCACT
CTAGCCTTGATACCATTTCAAAATGATGAACTGGTGCACGTTCGGATATT
ACAGACATTATATAAATCATTATCCAACAGGAAATTTGATTGTCCACGTT
TTGGCCCTCATTGGGAACTGATCGGGTTTCAAGGTAAGCGAGTAATAATA
ATTTtgtaagaacacgaggctgactATGATTTCAGGTTATTTTAATCTTc
aggtaaaaaaaacaaaactaataaaaacGTTGTAAGAACGTAGATGACGA
CGTagtcttttatacggaaacacccgaaaacacGGGGCATTTGTcaccag
ttttgaatttaaactaTTAAACTGATGGCAAAcaccatagtgtcctcccc
cctggattcaggggggggaatgggttttgaggtcaaaaggacgtataggg
gggaaagaattttttttgtagcCAGGGTGGGGGAAAACGATGGggggggg
aatggaaaattttcattctaggcatgggggggactcaccaaaatcaattc
aaaattgaaaaacatctggttttattcatttatttcaaCCAGCAATATTA
CGGTTTAAAAAcaaccatcctttccatttattcttgaattagaactacct
tagggaaaacaataagcgttaaattcatcaaattacagctttttatgCGT
GAGGGGGGGGGACAGAGAAATTTTTGGAGGCAGGGGGGGGAAGAATGAGG
GGgtgatggaaaattttcattctaggcatgggggggactcaccaaaatca
attcaaaattgaaaaacatctggttttattcatttatttcaaCCAGCAAT
ATTACGGTTTAAAAAcaaccatcctttccatttattcttgaattagaact
accttagggaaaacaataagcgttaaattcatcaaattacagctttttat
gCGTGAGGGGGGGGGACAGAGAAATTTTTGGAGGCAGGGGGGGGAAGAAT
GAGGGGgtgatggaaaattttcattctaggcatgggggggactcaccaaa
atcaattcaaaattgaaaaacatctggttttattcatttatttcaaCCAG
CAATATTACGGTTTAAAAAcaaccatcctttccatttattcttgaattag
aactaccttagggaaaacaataagcgttaaattcatcaaattacagcttt
ttatgcgtgagggggggggggacagAGAAATTTTTGGAGGCAGGGTGGGG
AAGAATGAGGGGgtgatggaaaattttcattctaggcatggggggggaga
caccctgaaggacactatgaACACTCGCTGTATTTcgtgtgtttccgtat
aaaagattacgtcatgaatataaaaaattaagaacatcgagCAGCAGTTT
TAGTCCTAGACCAGTAGTTAGTGTATTCCCCTTCTTGAAGTGTATTTTTT
AGTATTATCGActcatttctttcaaacctaGCAAATCAGAGGAAAGGAGA
ACAGTTGTTacactttgttttttttcaccttATAGGTAATGACCCTTCAA
CAGATCTCCGTGGCTGTGGAATGCTTGGCTTGTTAACAACTCTTCACTTT
GTTACATCATCTAACACCAAAACGCTAGCTTCAAACATTTATCAACTATC
ACGTCATGAGATTCAAAATTTCCCTTTTTGCGTGATGTCTATCAATATCA
CACGCATCTCTTTACAAGTGCTTCGTAGTGGGAAAATTAACAAGTAAGTC
GTTTGTACGTATCGTCAAATAAAGGTAGTCTGATGATAGCTCTAgcactt
tttaacaaaaatggAAATTATTCTTTTCTATGTAATTCATGAcatttatg
acgtattgttttatacggaagcactcAAAAAAGACCGAgtgtttgccact
aattttgaaCTTGAACAATAAAACTAGTAGCCAACGCTCAGGCTATTTTC
GATgcaaacattacgtaatgaatacCATGAATCCTGATGAGTGATTTCTT
GTTAGGTATCTTTATTTCACTGATAAACGTACTTGTCCTTAAgttatttt
cgaaaatcctgGTTATAAATTGTACTTTGGACATAAACTGGTCTGGCCCA
ATGATGCGAGAGGAATTTCTGGAAACGTAGCCAAATGTAAATTTCGTGAT
TCAAGCAACGATAaccttcaaaaatggtctaatCATCCttctatttttgt
ttcagaGAGTGCAACCAGCGTTTAAAACAAAGACATAAATCGAAACAGAA
ATATACTAACGACATAGACCTTACGGTTTACGATGTTTTTCAAGAACTTT
ACGAAGCCATATTCTACAAATTATATACAGTTTGGAAGAACGAAGGAAAA
ACAATGACAGAGTCTGGTTTCGTCATAAGAGATATTGAAACATTAGCCAA
ACAAAAACCAATGGATTTATTGAAAAACTATAGGAAAAGACTTTCTTCTG
AAGGAAGCAAGAAGAAAAATGGTGGAAACCAGAATGAAGAGAAAATCGAA
TCCTTTGTAGGAATTGAAGACTTAGGATGAAGAACGCTTTTCACTAGGCA
AAAGAAGGTAATTTAATTAGCACTAACCACTAATGTTTCCTCTGGCAAAG
TTACTTGAGCATGTTAACTGGGTATCTTCATTAGCCAATGGGCTTCTTTT
CATTCGTTACATTATCTTATTACCAAATTAccgattgattgattgattga
ttgattgattgattgattgattgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgatataCAGATGCAAGATTTCT
ATTTTGCGAGTAAGAGGGTTTTAGAGTCAAATGATCCACTTATAAAGATT
TATAATGACCAGGCTCATATAACTTGGACGCACCAATGACAATTTGTGAC
TGCGTAAATACCCTTCAGTAATTCCTACACTTTactttaaaattattatt
ttgaacTAACAGGAAAGTTggattttttaagttttcagGGCTGTATTATT
TTagtagtttttagtttttttaaaaaattttttattttgtacataTGAAC
TTTGAATTTTAACTGCCCACGTGTAAATTATTGATTCCATAAAGATTAGA
ATTTTTGAAAGAGAACATTGGTTCGCAAGATGAAGAGCAAACGGTTAAAa
agccaaaacaaaaacaaatcttttatcttatgtttttcctgttttttttt
ctattattttttttcgtctTCTGTTTTTAATAATCAAAATTCGATAGTTT
TTGTATAGCTTTGTGTTATTTCAATCACGAGAATTATTTCGAAGTACCTT
GACCATAATACTCTTCTAGAGTCTGAGTATCAAGtgcctaaaactcaaaa
agtttgaGAAAAGTAAAGAGAATGTTTCTCACAATCTTACTTTCTTGTCA
AAGTTAAGTACTTTGTAAGTGCCTGTGTCCAGAATGTATTGACAAAGAGA
ATTATTTAGTTACCCATTGCTTAAAACATTGTTATCGAACTATTTGGAct
ataaacgttttttataagaacatcctagatttttgaattttgactttttt
agttttaagccttaaatgttcttaaaatgttctcatttttACCAGCTCCT
TCTGCAATTATCTAAGAGATAATGTTTTGACTTCTGTCTTTAAAACCTGA
AAAGTGTTCTTAACAGGACCACAGAagatatctcaaaccatcttaTTCCC
Tttttcttagcttgttcttaatattttggtcatcgaaaccttatgttttt
ataaagtttgttcttatagaaaaacgtgtatttttacactgtctatttat
ttttcattctgaagaagcaatttgaaattttttggataTCTCTAGACTAG
AGATTTTATTTCTGTTAGATTCGATTTCTATGTTGATATTGGTTGCCATG
GTGAAGCACAATCAGCTGATCAAATTGCAATACAATATCAAAAGGACGAT
GACAACAATGCGCCATTATGGTTAAAAGTCTCGTCTTACCAAATAATGTG
AGTGATACTTAATATTTTGCtacttttttctctttctgtcattttataaa
atttggttTTGTCAGCATTTTACTTCGTTTACCTCTGAATATGAAAGTCT
TAAAGGGAAtaagatggtttgagatatttggtcTGTGTAGAAATCTTCTG
TAGTCCTGAGTAAAACCTCAAAAGTATTTTCgtctaactattttccaaaa
tcgagattGAGCGCTCTTACAAGGTTCTTACGTTTTTNGGTCCTGAGAAA
ATCTCCCAAGTATTTTCGTCTAAATTTTTTCCAAAGTAAAGATATCAAAA
TGGGTTCTTACGTAGAAATCTTATGGTTTTCTTAAGTCGAAAACATGTAT
ATTATACTTGCCAGATATCTCGAACCATCTGATTGTCCCTTTAACGTCAA
TTGACTACACAAAGACATTGTTCAAAGGTTTGTCCGTGACGGTAGATGTA
AATCTTGAATGTAATTGGCATACGAAAATCTTTTGGCATATCTTCTTTAA
TGATCGTGTAGGAGGTGTCAATATTCTACGTCAACTCACGAATCTCATTC
AAAAAAACACTTGAGaacattttgtttatttgtaTTCGTCTGATGAATTT
ATGTTTAGTCAATAGAAAAGGTGACCTTGATAAGCCATATTGATGCATAT
ccgggaacaagaaaaatagtTTAAGTGTTTGACATAGTTTACGAAAAGTT
TATGAAAATGCGTTTGTTAATGTCATATTTTACTAAACCATCGATGGGAT
TGGGTTTCTTTACCTCTCGCTGgtacaatctcggtcaaaatatattggga
attttggttaatGCCTCGTTTTCAGCAACTAAAAGTTCGGGTGAAAATGt
cgcttttgggcaaatttataaatttattcgaatattcaattcgggagggg
tttatagacttccaggctatattctgggccctattggaccattgttGAAC
TTTTAGTTCCTCAGATCCTATACTCTACCCGTCCAACCTAATtcagagcg
cttccaaatcgtttgtggttgtgagatttcgtgggaatttcccttttttc
tcaaatattatgactttgattgtataTTACGGTATGCGTTTTATGGAACG
TTTTTTTAATGTTGGTTTTTCATTATTTGATGATTTAAgacttttacctt
ttttttattgataatattCCATTTCTGATTATATTTTCAACGCGCACAAA
ATCACTATCTAGTTCGAATTCCACAAAGAGTTTACAGCCTTTCGTCTCCG
CACGCTGTCGATTGTATCCAATACTTTGAATGTatagttttttcgttttt
ttcccattttccataatttctgaaatttcacctGGGTTTAGTTATTCATT
acttagttctcgccaaaataagttcttaccatatttaaatttttactatt
tttgtcCTCGCCAAATCAGTTCCCTTAAAGTAGTTAGGGGACTAAATACA
ATATCGGGTACCGTGACTTTCGTTACAGCTGTATCAGTCAAGTCTCTTTG
GTATGGGGtaccaattttccaaaaaggtgGAGTATGAAGATAAACCCTGA
AATATATTCACTACATTTGGTTCTAAGATTtagagatgccttggagtttt
tacaagatgcttaactgattggttatttttaaacaatagggatgacgcgt
tctttagtaaaagtaataaaatcgtttgtctcaacatttaacgaccaaca
gagtcatcaaagaacttgtaaaaactccagcttgacccaagATTTAAATT
AGTCAATCCTCCTTNGTTTAACGACCAACAtagtcatcaaagaacttgta
aaaactctagCTTGACCCAAGATTTAAATTAGTAAATCCTCCTTCAAATG
GTGAAAAGtatggatttttaacatttttagttttctcacaaCCTCACTTC
aaacttgtacactttttttaaatacctGGTTTTATTTTAGCCTTTTCTTG
CGAGTGTTGTGTTAACCGTCTGAAAGGTCTTATATTTATCTTTAAGATTA
ACACAGTGCAAGGATTTCCTCATCTcagtttttttttggtttgtacgatg
tacacgtttttgttataagaataaactatataagaacataaggcttcgat
tgccaaaatgataagaacaagttaagaacattttaagtcttcgcagactc
taaaacacccaatttcttgggaagatggacaaaaatgctcaagaaatggt
gaaaataaaaaccttttaagaacatttttaggcttgtaACTTAaacagtt
aagaacatccgaaggcttcaaaaattttggatgttcttataaaaaaagac
gtATAAACGTAAATCGTGTAAAGTGTTTCGATTACTCTCTTTCTAAACTA
TATTTTTACTTCACTTGTTGATTTATGTTCTGTTCAAATTTGCTTTTACT
TTGAATATATGTTTCAAATTTGCTTTACTTTgaagtacaatcatggtcaa
aatctattgagaatttagcttatttcctcgtttttcgagtTTGGAGTTTG
gatgagaaagtcgattttgggccatctctgatatatttcaattttgcaCG
GGTNGGGAGTTCGggtgagaaagtcgattttgggccatctcttaaattta
atctgatatatttcaattttgcacgggtttatagacttccaggttatatt
atgagccttattgaaccatttttgaacttttggatcctcagatcagccta
aggtcctaagttttaagtccagcgttaaaactctacccttctaaCCTAAC
TTATAGCAGTTCAAAATCGTTCCAATTTTtcctcaaatattacgaccatg
attgtagttcgATTTGAAATTATGGCTGTTCAGCCACTTTTCAGCTTATA
GAGTGTAATTAATATTTCTGACTTGGTTTTGGGACCCTTCCAGAGACTCA
ATTGCTAATTTATGGTTATGAATCCCTTCGAGAGCATTTCGAGGGtgtaa
aaagggacccttatggctctcACATACTTGACGCCCATATTTTCTCTAAC
TACCCCCACCCCCTCTCAAATACGTCACTATTCATTTTTTCCTTCAATAA
AGTAGATTCCAAAACTATGTCCATTGGGTTTTTTGACCTGGGAACAAACT
TTTTATCCCCTTTGtggttttgatagaaattttcataccCACTTtgggaa
gaagttccaccggggctctgagacaggggtgtagctGACGATTGTCTACT
AAAGACTTGAAACAAGGATAGTTGCATagaatgaaatttttgttttttat
cttgatGGTTAAGACTTGGTTTACTGAGGAATTCTCTCCCTCGATAACTC
TTGTAATGACGGTATTAACAACTGAagtatttgatttttgatttttttga
cttaATGAACTGCTAGAAAGGAGTTGTTTTATACTAACGACGTGTGAATA
TTTTGTCTCGATACTTCGTTTGAAAATCAGTTACATTTGCGTCTTAAGGG
TTCAACAAGCTAGGCAAAACGCATGCTTTGAAATCAATagttgaaacttt
ttcaaaaatataagcACAATTAATCTTGTCAACGTTTGTTTTTTGTACCG
ATTCAgttgttttgagaaagttttcTTGCTAAGAATGTAACATTTGGAGG
TATGCCTATGAGACAGAGTTATATCATGTTTTGTCTACCTCGTCATCGAT
TTTTTAACGTTCTAATCTTACAGAGTCAGTGTTGAGAAATGATGTTTAGC
CGAGACAAAGATTTAAATAACAATGGAGTACAGTACCGTTTACCGGCATA
TGATAAATTCAAAACGCTTAATGAACTTGAATATGAAAAACGTTTCACAA
ACAACAACCTACATTACGTCAACCCTTTACCACGTGATGAACAGACTTTC
AGCGTAACAGGAAAACGCATGGTTCAagtcaaagaaaatttgagtgaAAT
CCTAAAACAAATCGAGAAAGAAACTTTAGAACGTTTACAACAATCGCTTG
AAGAGAAAcatgaaaattttctaaaatcggaATACGATTTTCCACTGACG
GTGGATGAACAACAGGACTCCGACGTTATGTCGGAACACGGAAACCGTGT
GTACGTTCCGAACGATACTTATTACCGTGAAAAGGAAATTCAGGATGCAG
CACAAAACATCAGTTGTCGAATTTTGTTACGTTATAATCAACCAAATGAA
AAGGATCAAGAACCACCAGATTTACAAAACGTCCAACCAAACGTTCAGGT
GGAATCGAATAAGCCGCTAGATGATTATTCTAGCGCAAAAGCAGCTTCAG
CGAGAACACAAAATGAGAATGATGAAGATTATGAGATTCACgatttggaa
agata

Coding sequence (CDS) from alignment at sc0000146:145919..155223+

>TCONS_00012621 ID=TCONS_00012621|Name=TCONS_00012621|organism=Clytia hemisphaerica|type=CDS|length=4944bp|location=Sequence derived from alignment at sc0000146:145919..155223+ (Clytia hemisphaerica)
ATGACATCTACGGAGGAGAGCAAGGATGTAGAGTTTGACTATGGTGATGA
ATTCTTTACCAAATCAGCCCAAGATACTGTTGAATCTCAAGATGCAGATC
CTGCACAGCTGACAGAGACAAATACATCCGTCGAGAGCAAAGAAGAGTTG
AATCAAAACAGGATTGAGAATAAATTACCTGAGTTAGAAATTACTGATCA
TGAACAAGATGTAATGAAATCTACTGGTGAAAAACAAGCTTCCATCAACG
ATATCACATCGGAGCCTGGTGAATCACCAGAAACTGAGGAGGCCAGGGTT
GAAACGAATGCTGAATCTGATGGTGAAGTTGATGAATGGGATGAACTGCA
ACTGGATCCTAAAAATTCTGCCGAAAATCCTGAAAACATGACATCTCCAA
TGGAATTCAAAGAAGCTTTGCAATTCTTCGAAAACATCGATCTCAACCAA
TACGCTGATAAAATACGAACAGCTCCAAAAAGATCTGGGATTTCTTCAGT
CTTTCATAACATTGTTGGACCACCGAAACTTCACAAATCACTAGTCCCTG
AACGCAATTTGATATTCACTCTAGCCTTGATACCATTTCAAAATGATGAA
CTGGTGCACGTTCGGATATTACAGACATTATATAAATCATTATCCAACAG
GAAATTTGATTGTCCACGTTTTGGCCCTCATTGGGAACTGATCGGGTTTC
AAGGTAATGACCCTTCAACAGATCTCCGTGGCTGTGGAATGCTTGGCTTG
TTAACAACTCTTCACTTTGTTACATCATCTAACACCAAAACGCTAGCTTC
AAACATTTATCAACTATCACGTCATGAGATTCAAAATTTCCCTTTTTGCG
TGATGTCTATCAATATCACACGCATCTCTTTACAAGTGCTTCGTAGTGGG
AAAATTAACAAaGAGTGCAACCAGCGTTTAAAACAAAGACATAAATCGAA
ACAGAAATATACTAACGACATAGACCTTACGGTTTACGATGTTTTTCAAG
AACTTTACGAAGCCATATTCTACAAATTATATACAGTTTGGAAGAACGAA
GGAAAAACAATGACAGAGTCTGGTTTCGTCATAAGAGATATTGAAACATT
AGCCAAACAAAAACCAATGGATTTATTGAAAAACTATAGGAAAAGACTTT
CTTCTGAAGGAAGCAAGAAGAAAAATGGTGGAAACCAGAATGAAGAGAAA
ATCGAATCCTTTGTAGGAATTGAAGACTTAGGATGAATGACATCTACGGA
GGAGAGCAAGGATGTAGAGTTTGACTATGGTGATGAATTCTTTACCAAAT
CAGCCCAAGATACTGTTGAATCTCAAGATGCAGATCCTGCACAGCTGACA
GAGACAAATACATCCGTCGAGAGCAAAGAAGAGTTGAATCAAAACAGGAT
TGAGAATAAATTACCTGAGTTAGAAATTACTGATCATGAACAAGATGTAA
TGAAATCTACTGGTGAAAAACAAGCTTCCATCAACGATATCACATCGGAG
CCTGGTGAATCACCAGAAACTGAGGAGGCCAGGGTTGAAACGAATGCTGA
ATCTGATGGTGAAGTTGATGAATGGGATGAACTGCAACTGGATCCTAAAA
ATTCTGCCGAAAATCCTGAAAACATGACATCTCCAATGGAATTCAAAGAA
GCTTTGCAATTCTTCGAAAACATCGATCTCAACCAATACGCTGATAAAAT
ACGAACAGCTCCAAAAAGATCTGGGATTTCTTCAGTCTTTCATAACATTG
TTGGACCACCGAAACTTCACAAATCACTAGTCCCTGAACGCAATTTGATA
TTCACTCTAGCCTTGATACCATTTCAAAATGATGAACTGGTGCACGTTCG
GATATTACAGACATTATATAAATCATTATCCAACAGGAAATTTGATTGTC
CACGTTTTGGCCCTCATTGGGAACTGATCGGGTTTCAAGGTAATGACCCT
TCAACAGATCTCCGTGGCTGTGGAATGCTTGGCTTGTTAACAACTCTTCA
CTTTGTTACATCATCTAACACCAAAACGCTAGCTTCAAACATTTATCAAC
TATCACGTCATGAGATTCAAAATTTCCCTTTTTGCGTGATGTCTATCAAT
ATCACACGCATCTCTTTACAAGTGCTTCGTAGTGGGAAAATTAACAAaGA
GTGCAACCAGCGTTTAAAACAAAGACATAAATCGAAACAGAAATATACTA
ACGACATAGACCTTACGGTTTACGATGTTTTTCAAGAACTTTACGAAGCC
ATATTCTACAAATTATATACAGTTTGGAAGAACGAAGGAAAAACAATGAC
AGAGTCTGGTTTCGTCATAAGAGATATTGAAACATTAGCCAAACAAAAAC
CAATGGATTTATTGAAAAACTATAGGAAAAGACTTTCTTCTGAAGGAAGC
AAGAAGAAAAATGGTGGAAACCAGAATGAAGAGAAAATCGAATCCTTTGT
AGGAATTGAAGACTTAGGATGAATGACATCTACGGAGGAGAGCAAGGATG
TAGAGTTTGACTATGGTGATGAATTCTTTACCAAATCAGCCCAAGATACT
GTTGAATCTCAAGATGCAGATCCTGCACAGCTGACAGAGACAAATACATC
CGTCGAGAGCAAAGAAGAGTTGAATCAAAACAGGATTGAGAATAAATTAC
CTGAGTTAGAAATTACTGATCATGAACAAGATGTAATGAAATCTACTGGT
GAAAAACAAGCTTCCATCAACGATATCACATCGGAGCCTGGTGAATCACC
AGAAACTGAGGAGGCCAGGGTTGAAACGAATGCTGAATCTGATGGTGAAG
TTGATGAATGGGATGAACTGCAACTGGATCCTAAAAATTCTGCCGAAAAT
CCTGAAAACATGACATCTCCAATGGAATTCAAAGAAGCTTTGCAATTCTT
CGAAAACATCGATCTCAACCAATACGCTGATAAAATACGAACAGCTCCAA
AAAGATCTGGGATTTCTTCAGTCTTTCATAACATTGTTGGACCACCGAAA
CTTCACAAATCACTAGTCCCTGAACGCAATTTGATATTCACTCTAGCCTT
GATACCATTTCAAAATGATGAACTGGTGCACGTTCGGATATTACAGACAT
TATATAAATCATTATCCAACAGGAAATTTGATTGTCCACGTTTTGGCCCT
CATTGGGAACTGATCGGGTTTCAAGGTAATGACCCTTCAACAGATCTCCG
TGGCTGTGGAATGCTTGGCTTGTTAACAACTCTTCACTTTGTTACATCAT
CTAACACCAAAACGCTAGCTTCAAACATTTATCAACTATCACGTCATGAG
ATTCAAAATTTCCCTTTTTGCGTGATGTCTATCAATATCACACGCATCTC
TTTACAAGTGCTTCGTAGTGGGAAAATTAACAAaGAGTGCAACCAGCGTT
TAAAACAAAGACATAAATCGAAACAGAAATATACTAACGACATAGACCTT
ACGGTTTACGATGTTTTTCAAGAACTTTACGAAGCCATATTCTACAAATT
ATATACAGTTTGGAAGAACGAAGGAAAAACAATGACAGAGTCTGGTTTCG
TCATAAGAGATATTGAAACATTAGCCAAACAAAAACCAATGGATTTATTG
AAAAACTATAGGAAAAGACTTTCTTCTGAAGGAAGCAAGAAGAAAAATGG
TGGAAACCAGAATGAAGAGAAAATCGAATCCTTTGTAGGAATTGAAGACT
TAGGATGAATGACATCTACGGAGGAGAGCAAGGATGTAGAGTTTGACTAT
GGTGATGAATTCTTTACCAAATCAGCCCAAGATACTGTTGAATCTCAAGA
TGCAGATCCTGCACAGCTGACAGAGACAAATACATCCGTCGAGAGCAAAG
AAGAGTTGAATCAAAACAGGATTGAGAATAAATTACCTGAGTTAGAAATT
ACTGATCATGAACAAGATGTAATGAAATCTACTGGTGAAAAACAAGCTTC
CATCAACGATATCACATCGGAGCCTGGTGAATCACCAGAAACTGAGGAGG
CCAGGGTTGAAACGAATGCTGAATCTGATGGTGAAGTTGATGAATGGGAT
GAACTGCAACTGGATCCTAAAAATTCTGCCGAAAATCCTGAAAACATGAC
ATCTCCAATGGAATTCAAAGAAGCTTTGCAATTCTTCGAAAACATCGATC
TCAACCAATACGCTGATAAAATACGAACAGCTCCAAAAAGATCTGGGATT
TCTTCAGTCTTTCATAACATTGTTGGACCACCGAAACTTCACAAATCACT
AGTCCCTGAACGCAATTTGATATTCACTCTAGCCTTGATACCATTTCAAA
ATGATGAACTGGTGCACGTTCGGATATTACAGACATTATATAAATCATTA
TCCAACAGGAAATTTGATTGTCCACGTTTTGGCCCTCATTGGGAACTGAT
CGGGTTTCAAGGTAATGACCCTTCAACAGATCTCCGTGGCTGTGGAATGC
TTGGCTTGTTAACAACTCTTCACTTTGTTACATCATCTAACACCAAAACG
CTAGCTTCAAACATTTATCAACTATCACGTCATGAGATTCAAAATTTCCC
TTTTTGCGTGATGTCTATCAATATCACACGCATCTCTTTACAAGTGCTTC
GTAGTGGGAAAATTAACAAaGAGTGCAACCAGCGTTTAAAACAAAGACAT
AAATCGAAACAGAAATATACTAACGACATAGACCTTACGGTTTACGATGT
TTTTCAAGAACTTTACGAAGCCATATTCTACAAATTATATACAGTTTGGA
AGAACGAAGGAAAAACAATGACAGAGTCTGGTTTCGTCATAAGAGATATT
GAAACATTAGCCAAACAAAAACCAATGGATTTATTGAAAAACTATAGGAA
AAGACTTTCTTCTGAAGGAAGCAAGAAGAAAAATGGTGGAAACCAGAATG
AAGAGAAAATCGAATCCTTTGTAGGAATTGAAGACTTAGGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007080XLOC_007080Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012621-exon-sc0000146-1491911889:145919..146553TCONS_00012621-exon-sc0000146-1491911889:145919..146553Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1510915933:145919..146553TCONS_00012621-exon-sc0000146-1510915933:145919..146553Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1575043694:145919..146553TCONS_00012621-exon-sc0000146-1575043694:145919..146553Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1491911889:146766..147101TCONS_00012621-exon-sc0000146-1491911889:146766..147101Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1510915933:146766..147101TCONS_00012621-exon-sc0000146-1510915933:146766..147101Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1575043694:146766..147101TCONS_00012621-exon-sc0000146-1575043694:146766..147101Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1491911889:148454..148661TCONS_00012621-exon-sc0000146-1491911889:148454..148661Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1510915933:148454..148661TCONS_00012621-exon-sc0000146-1510915933:148454..148661Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1575043694:148454..148661TCONS_00012621-exon-sc0000146-1575043694:148454..148661Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1491911889:149124..149475TCONS_00012621-exon-sc0000146-1491911889:149124..149475Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1510915933:149124..149475TCONS_00012621-exon-sc0000146-1510915933:149124..149475Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1575043694:149124..149475TCONS_00012621-exon-sc0000146-1575043694:149124..149475Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1491911889:150787..150915TCONS_00012621-exon-sc0000146-1491911889:150787..150915Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1510915933:150787..150915TCONS_00012621-exon-sc0000146-1510915933:150787..150915Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1575043694:150787..150915TCONS_00012621-exon-sc0000146-1575043694:150787..150915Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1491911889:154592..155223TCONS_00012621-exon-sc0000146-1491911889:154592..155223Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1510915933:154592..155223TCONS_00012621-exon-sc0000146-1510915933:154592..155223Clytia hemisphaericaexon
TCONS_00012621-exon-sc0000146-1575043694:154592..155223TCONS_00012621-exon-sc0000146-1575043694:154592..155223Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012621-proteinTCONS_00012621-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:145919..155223 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125007	0.565429	0.370371	0.277627	0.987886	0.727643	1.16703	0.790983	2.01365	4.69385	3.84829	1.44239	1.79986	1.73447	3.14154	5.40542	2.95017	5.45551	2.73813	2.88669	2.98392	2.99741	2.4299	2.15617	6.88833	8.26037	0.621717	0.317142	3.5089	3.7902
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006816ELMO_dom
Blast
[Close]
BLAST of TCONS_00012621 vs. Swiss-Prot (Human)
Match: ELMD3 (ELMO domain-containing protein 3 OS=Homo sapiens GN=ELMOD3 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.378e-63
Identity = 112/273 (41.03%), Postives = 167/273 (61.17%), Query Frame = 2 
Query:  599 DEWDEL-----QLDPKNSAENPENMTSPMEFKEALQFFENIDLNQYADKIRTAPKRSGISSVFHNIVGPPKLHKSLVPERNLIFTLALIPFQNDELVHVRILQTLYKSLSNRKFDCPRFGPHWELIGFQGNDPSTDLRGCGMLGLLTTLHFVTSSNTKTLASNIYQLSRHEIQNFPFCVMSINITRISLQVLRSGKINKECNQRLKQRHKSKQKYTNDIDLTVYDVFQELYEAIFYKLYTVWKNEGKTMTESGFVIRDIETLAKQKPMDLLKN 1402
            +EW+ +     +   + S+E P  + S   F EALQ F+ +DL+ +  +I+   +R+G++++ H + GPPKLH+ L  ER+L+ T+A     + + VH R+LQT+YK L+  KFDC   G HWE +GFQG +P+TDLRG G L LL  L+ V  S T  +A  I++LSRH IQ FPFC+MS+NIT I++Q LR   +++ECN++ K                V  V    Y A F  L  VW+ + KT+++SGFV++++E LAK+ P  LLK 
Sbjct:   77 EEWEAVDTIQPETGSQASSEQPGQLIS---FSEALQHFQTVDLSPFKKRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRLSRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQK----------------VIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKELEVLAKKSPRRLLKT 330
The following BLAST results are available for this feature:
BLAST of TCONS_00012621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELMD33.378e-6341.03ELMO domain-containing protein 3 OS=Homo sapiens G... [more]
back to top