MSTRG.14208.1.p1 (mRNA) -

Overview
NameMSTRG.14208.1.p1
Unique NameMSTRG.14208.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000117_pilon:646172..649633-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14208.1.p1 ID=MSTRG.14208.1.p1|Name=MSTRG.14208.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3462bp|location=Sequence derived from alignment at sc0000117_pilon:646172..649633- (Clytia hemisphaerica_ch_hm2_pilon)
GAAATTAATTGTACAGTGTTAGTGAGAAGGTCGCATAAACATAAAAATGA
TAGTGCTTGCTGTCATCATTTCTCAACTCATCGCAGGTAAGCTTTTTATC
TTTCAATAGTTAAGGATGAGATTGATACTTTGCGATTAGCTTCACATAAA
TTTGTCTTTTTATGAAAATCATAATCATAAGTGAAGACCAAATGTATGTG
GATCTCAAGATATTATATACTATATGTCAATCATTTGATTCTTTCTTTTT
AGAAGTATTTGCGTCGACTAACGTCCACGTGTCTGGGGGTGCCTCAGCTC
ACGATCAACCGAGTTGTGGAGCAATCACCACACCATGTTTCAGTGTGCAA
TACGCCCTTGATAAATCCATCAATGGCGATACAATACTTCTTGACATCAA
CTACGAATTTGTTTTCAAACAAAATTTACAGATCAACAAAAATGTCTTAA
TCACATCATACACAAGTACAACAAACCTACCAACCAATCAGTATGCAACA
ATAATATTCCCCAACCCACAATTTTCAAGTTTTGGACTTATAAATCCAGC
GTGTAATTTCACTGCAATGAATATTAATTTCACCGTTCGATGCACCAATA
AGGTTCGGTACCCCGTCGCTTTGTTCGGAGTCAACCGTCATTATGGCACC
ATCAGCATGTACAACTGTTTGATCAACTTGAATTTAGATTTCCAGAACTT
CCTCTCCATATTTCAATTTGGAGGCTTCAATTGGAAGTTCAATTTCGAGA
ACACTAAATTTACAGCAGCGTCCAGTATTTATACCGTAACCTCCAGAATG
TCAGGAAGATCACGCAGACAGTTTTCAGATACTAATAACGTTGACGAGTT
GACTTTTTATAATTGCTCCTTTAACTCGATCGAAATTTTTCAACTCGAAG
CGTTCAATGTACTCTCTTTAAACAAATCACAAGCATTCGACAGTTATTTA
TCATTTGATTATGGAAGTGAAAAAAGGGTTGTTGATTGTACGTTTATTCA
ATCCGACCTTGATATGATTGCCGATAATCTATATGTGACAAACTGTACTT
TTGATGGATCATATGGAAGTAGCGGTTTTTTTACTCCTACTTATGCTCAG
CTTTCTTATAAGGGCAAAAATCTTACTATTTGGAATTGCAGCTTTATGAG
AGCCACTCAAGGAGCGGTTAATACTTGGAAAATAGCAGGCCTCGTAACTG
TTCTTAACACTACATTCAAGGACAACAAATTGAATCATTTTGGATTGGTT
GAAAACACATTACGCTCAGCTGCTTTGACTGTCAACTCGTGTTATTATAA
GATTATCAATTGTATTTTTCAAAATAACGGGGATATGCTCACCCGGGTGG
AATCAAATGATCTCCACATTTCCCTTTTAGATGAAAGTTCATGCAGTGGA
GTGCTTTCATCTCATCAACTAGTTGCCAACACGACTATTTATGGTGATGC
AAACTACGTTAACAGCCAGAGTAGAATCGCTGTCTGGGATTTCATGTACA
GTAAAAACTTCATGATTTATTGCCCCCCTAATCACATAACAACCTCTGCT
AACCACTTTGGCACCTTTGAAATATTCACTTGCTATCGATGCGATGGAGC
GTCTTACAACGCACTCAGTCTCGCTAAGATCTGGTACAAAAACGAATGGA
GTAGCGAGTTTACCGGTGAAGTGGAAAAGTCTACGTGCTATTCTCCTTGT
CCTTACCAAGCATCTTGTGTCGGCAAGATCGTGAGCAGAGGCAATTACTG
GGGAGTGACTAACTTGACAGGTTTTGTGACTTTCTTCCCCTGTCCCTCTG
CCTATTGTTGTTCTTCTCTACCATATTGCAATTCGTACGACACATGTGCG
CATAATCGGACCGGTAGGTTATGTGGCGCATGCGTGAAAGAAAATGTTGT
GTCAGCAATCGGAGAAAATCGATGCGTGAATAAGGAGCATTGTTCTGGAG
CCTTGTTTTGGATTGGTTACACCCTATCCTCAATTTTGATTTACTTGTTC
GCCGTTTATTATAAAGACGTTTTTATGTTTATCAAAACAAAACTTAATAA
ACAGCGTGCTAGAATAACCTCCCGAGCTTTGGTTTCAGTGATCGAAGATG
AAGATTCGCACCCTTACCAAGTGTTGCCAGCTGGTCCTGCTGTTGAAAAC
GATCAACCTGTTACTGCCAACAATGTCGACGAAAAAGGTTTCATCAAAAT
TGCTTTTTTCTTCTACCAAACAGCATCGGTGATCCGCATCAGCGCCTCTG
CAAAGACCACTTACAAGATGCCAGCAATTATGGATATATTGACGTCTTTT
TTCAACTTGAAACTAGATGTCCAGTCTTCGGACACTTTTGATACATGTCC
TTTGAATACGGATAACGTGATTGCGATCAACTTGTTGAAAACTAGCGTGC
TGTTTACTTCTTTTGGTATTGTTCTTGTCTTCATTCTGATCCTTTCTGTC
TCAAAGAAATTCTCTTTTTGTAAGAGACGGGAGAGTTCACCAGAGAAGCA
GGAAGTGACATTACTGGTGAAATTAAAAGGTGCTTTCATCCAATTACTTC
TCCTTGGATATGCGTCCATAGCAACAATATGTCTCCAAGCTATCAATTGC
ATCGAGATCACTGGCCAATTATATCTTTACGTTCAAGCGACCATTCCGTG
CTACCGATCCTGGCAAAAGGTATTTTTCATGGTTATTGGTGTTTGGGTAG
TGCCGTTTCCGTTCGTTATTTATATCGGGTGTCGATTGTTCCAAGCGAAT
CAAATCGATACAAATAGATTATTATCGATTTTCATTTTTCCACCTTTGGT
GTTTTGGTACTTATTGAAGCATCTCATCAACAGAATCTCGACATCATCTC
CAGAAAGCGAACTCGTACAAGGAGAACGCAACTACATTCTATCGATTCTG
AACGGACCTTTCCGCTATCGAGATGGCGAGCTCCGTATCATTTGGGAACC
GGTCCTCATCATCCGGCGTTTTCTCTTGATTGTATGCTGCACATTCATCA
TTTCACCTACAGAGAAACTGTATCCTATGGCCGTCTTGCTATTGTTCTTT
CTCATGCACGATTTAGTTGCTCAACCGTTCAGCCAAAGCTTCCTCAATTA
TATGCAATACGCATCCATGCTACTCCTGTGCTTCCTGTTGGTTATCAACC
AATTCTGGGCATTCTCCACCGACGTCGATATCACTCAAAATCCAACATAT
CATCTGATGGGAAAATTATTCATTATCTTGGAAATGATCATTTTGCTTTT
GCCGATATTCATTTTGGTTGTATTTCTCATTGTAAAGATATGCAAGATTA
TTTTTAAAATGTTTACTGGTAAACAGGACTAAGATTTACAGGACATTTAC
CGTGAAGATTTTTTTCCTCTCCGACGTGTTGCTATGATCGGGCCAAAAAC
ATACACGTTTTTTTATAAGAACACCCAAAATTTTTAAAGCCTTCGGATGT
TCTTAACTTTTT

Coding sequence (CDS) from alignment at sc0000117_pilon:646172..649633-

>MSTRG.14208.1.p1 ID=MSTRG.14208.1.p1|Name=MSTRG.14208.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6240bp|location=Sequence derived from alignment at sc0000117_pilon:646172..649633- (Clytia hemisphaerica_ch_hm2_pilon)
AAGTATTTGCGTCGACTAACGTCCACGTGTCTGGGGGTGCCTCAGCTCAC
GATCAACCGAGTTGTGGAGCAATCACCACACCATGTTTCAGTGTGCAATA
CGCCCTTGATAAATCCATCAATGGCGATACAATACTTCTTGACATCAACT
ACGAATTTGTTTTCAAACAAAATTTACAGATCAACAAAAATGTCTTAATC
ACATCATACACAAGTACAACAAACCTACCAACCAATCAGTATGCAACAAT
AATATTCCCCAACCCACAATTTTCAAGTTTTGGACTTATAAATCCAGCGT
GTAATTTCACTGCAATGAATATTAATTTCACCGTTCGATGCACCAATAAG
GTTCGGTACCCCGTCGCTTTGTTCGGAGTCAACCGTCATTATGGCACCAT
CAGCATGTACAACTGTTTGATCAACTTGAATTTAGATTTCCAGAACTTCC
TCTCCATATTTCAATTTGGAGGCTTCAATTGGAAGTTCAATTTCGAGAAC
ACTAAATTTACAGCAGCGTCCAGTATTTATACCGTAACCTCCAGAATGTC
AGGAAGATCACGCAGACAGTTTTCAGATACTAATAACGTTGACGAGTTGA
CTTTTTATAATTGCTCCTTTAACTCGATCGAAATTTTTCAACTCGAAGCG
TTCAATGTACTCTCTTTAAACAAATCACAAGCATTCGACAGTTATTTATC
ATTTGATTATGGAAGTGAAAAAAGGGTTGTTGATTGTACGTTTATTCAAT
CCGACCTTGATATGATTGCCGATAATCTATATGTGACAAACTGTACTTTT
GATGGATCATATGGAAGTAGCGGTTTTTTTACTCCTACTTATGCTCAGCT
TTCTTATAAGGGCAAAAATCTTACTATTTGGAATTGCAGCTTTATGAGAG
CCACTCAAGGAGCGGTTAATACTTGGAAAATAGCAGGCCTCGTAACTGTT
CTTAACACTACATTCAAGGACAACAAATTGAATCATTTTGGATTGGTTGA
AAACACATTACGCTCAGCTGCTTTGACTGTCAACTCGTGTTATTATAAGA
TTATCAATTGTATTTTTCAAAATAACGGGGATATGCTCACCCGGGTGGAA
TCAAATGATCTCCACATTTCCCTTTTAGATGAAAGTTCATGCAGTGGAGT
GCTTTCATCTCATCAACTAGTTGCCAACACGACTATTTATGGTGATGCAA
ACTACGTTAACAGCCAGAGTAGAATCGCTGTCTGGGATTTCATGTACAGT
AAAAACTTCATGATTTATTGCCCCCCTAATCACATAACAACCTCTGCTAA
CCACTTTGGCACCTTTGAAATATTCACTTGCTATCGATGCGATGGAGCGT
CTTACAACGCACTCAGTCTCGCTAAGATCTGGTACAAAAACGAATGGAGT
AGCGAGTTTACCGGTGAAGTGGAAAAGTCTACGTGCTATTCTCCTTGTCC
TTACCAAGCATCTTGTGTCGGCAAGATCGTGAGCAGAGGCAATTACTGGG
GAGTGACTAACTTGACAGGTTTTGTGACTTTCTTCCCCTGTCCCTCTGCC
TATTGTTGTTCTTCTCTACCATATTGCAATTCGTACGACACATGTGCGCA
TAATCGGACCGGTAGGTTATGTGGCGCATGCGTGAAAGAAAATGTTGTGT
CAGCAATCGGAGAAAATCGATGCGTGAATAAGGAGCATTGTTCTGGAGCC
TTGTTTTGGATTGGTTACACCCTATCCTCAATTTTGATTTACTTGTTCGC
CGTTTATTATAAAGACGTTTTTATGTTTATCAAAACAAAACTTAATAAAC
AGCGTGCTAGAATAACCTCCCGAGCTTTGGTTTCAGTGATCGAAGATGAA
GATTCGCACCCTTACCAAGTGTTGCCAGCTGGTCCTGCTGTTGAAAACGA
TCAACCTGTTACTGCCAACAATGTCGACGAAAAAGGTTTCATCAAAATTG
CTTTTTTCTTCTACCAAACAGCATCGGTGATCCGCATCAGCGCCTCTGCA
AAGACCACTTACAAGATGCCAGCAATTATGGATATATTGACGTCTTTTTT
CAACTTGAAACTAGATGTCCAGTCTTCGGACACTTTTGATACATGTCCTT
TGAATACGGATAACGTGATTGCGATCAACTTGTTGAAAACTAGCGTGCTG
TTTACTTCTTTTGGTATTGTTCTTGTCTTCATTCTGATCCTTTCTGTCTC
AAAGAAATTCTCTTTTTGTAAGAGACGGGAGAGTTCACCAGAGAAGCAGG
AAGTGACATTACTGGTGAAATTAAAAGGTGCTTTCATCCAATTACTTCTC
CTTGGATATGCGTCCATAGCAACAATATGTCTCCAAGCTATCAATTGCAT
CGAGATCACTGGCCAATTATATCTTTACGTTCAAGCGACCATTCCGTGCT
ACCGATCCTGGCAAAAGGTATTTTTCATGGTTATTGGTGTTTGGGTAGTG
CCGTTTCCGTTCGTTATTTATATCGGGTGTCGATTGTTCCAAGCGAATCA
AATCGATACAAATAGATTATTATCGATTTTCATTTTTCCACCTTTGGTGT
TTTGGTACTTATTGAAGCATCTCATCAACAGAATCTCGACATCATCTCCA
GAAAGCGAACTCGTACAAGGAGAACGCAACTACATTCTATCGATTCTGAA
CGGACCTTTCCGCTATCGAGATGGCGAGCTCCGTATCATTTGGGAACCGG
TCCTCATCATCCGGCGTTTTCTCTTGATTGTATGCTGCACATTCATCATT
TCACCTACAGAGAAACTGTATCCTATGGCCGTCTTGCTATTGTTCTTTCT
CATGCACGATTTAGTTGCTCAACCGTTCAGCCAAAGCTTCCTCAATTATA
TGCAATACGCATCCATGCTACTCCTGTGCTTCCTGTTGGTTATCAACCAA
TTCTGGGCATTCTCCACCGACGTCGATATCACTCAAAATCCAACATATCA
TCTGATGGGAAAATTATTCATTATCTTGGAAATGATCATTTTGCTTTTGC
CGATATTCATTTTGGTTGTATTTCTCATTGTAAAGATATGCAAGATTATT
TTTAAAATGTTTACTGGTAAACAGGACTAAATGATAGTGCTTGCTGTCAT
CATTTCTCAACTCATCGCAGAAGTATTTGCGTCGACTAACGTCCACGTGT
CTGGGGGTGCCTCAGCTCACGATCAACCGAGTTGTGGAGCAATCACCACA
CCATGTTTCAGTGTGCAATACGCCCTTGATAAATCCATCAATGGCGATAC
AATACTTCTTGACATCAACTACGAATTTGTTTTCAAACAAAATTTACAGA
TCAACAAAAATGTCTTAATCACATCATACACAAGTACAACAAACCTACCA
ACCAATCAGTATGCAACAATAATATTCCCCAACCCACAATTTTCAAGTTT
TGGACTTATAAATCCAGCGTGTAATTTCACTGCAATGAATATTAATTTCA
CCGTTCGATGCACCAATAAGGTTCGGTACCCCGTCGCTTTGTTCGGAGTC
AACCGTCATTATGGCACCATCAGCATGTACAACTGTTTGATCAACTTGAA
TTTAGATTTCCAGAACTTCCTCTCCATATTTCAATTTGGAGGCTTCAATT
GGAAGTTCAATTTCGAGAACACTAAATTTACAGCAGCGTCCAGTATTTAT
ACCGTAACCTCCAGAATGTCAGGAAGATCACGCAGACAGTTTTCAGATAC
TAATAACGTTGACGAGTTGACTTTTTATAATTGCTCCTTTAACTCGATCG
AAATTTTTCAACTCGAAGCGTTCAATGTACTCTCTTTAAACAAATCACAA
GCATTCGACAGTTATTTATCATTTGATTATGGAAGTGAAAAAAGGGTTGT
TGATTGTACGTTTATTCAATCCGACCTTGATATGATTGCCGATAATCTAT
ATGTGACAAACTGTACTTTTGATGGATCATATGGAAGTAGCGGTTTTTTT
ACTCCTACTTATGCTCAGCTTTCTTATAAGGGCAAAAATCTTACTATTTG
GAATTGCAGCTTTATGAGAGCCACTCAAGGAGCGGTTAATACTTGGAAAA
TAGCAGGCCTCGTAACTGTTCTTAACACTACATTCAAGGACAACAAATTG
AATCATTTTGGATTGGTTGAAAACACATTACGCTCAGCTGCTTTGACTGT
CAACTCGTGTTATTATAAGATTATCAATTGTATTTTTCAAAATAACGGGG
ATATGCTCACCCGGGTGGAATCAAATGATCTCCACATTTCCCTTTTAGAT
GAAAGTTCATGCAGTGGAGTGCTTTCATCTCATCAACTAGTTGCCAACAC
GACTATTTATGGTGATGCAAACTACGTTAACAGCCAGAGTAGAATCGCTG
TCTGGGATTTCATGTACAGTAAAAACTTCATGATTTATTGCCCCCCTAAT
CACATAACAACCTCTGCTAACCACTTTGGCACCTTTGAAATATTCACTTG
CTATCGATGCGATGGAGCGTCTTACAACGCACTCAGTCTCGCTAAGATCT
GGTACAAAAACGAATGGAGTAGCGAGTTTACCGGTGAAGTGGAAAAGTCT
ACGTGCTATTCTCCTTGTCCTTACCAAGCATCTTGTGTCGGCAAGATCGT
GAGCAGAGGCAATTACTGGGGAGTGACTAACTTGACAGGTTTTGTGACTT
TCTTCCCCTGTCCCTCTGCCTATTGTTGTTCTTCTCTACCATATTGCAAT
TCGTACGACACATGTGCGCATAATCGGACCGGTAGGTTATGTGGCGCATG
CGTGAAAGAAAATGTTGTGTCAGCAATCGGAGAAAATCGATGCGTGAATA
AGGAGCATTGTTCTGGAGCCTTGTTTTGGATTGGTTACACCCTATCCTCA
ATTTTGATTTACTTGTTCGCCGTTTATTATAAAGACGTTTTTATGTTTAT
CAAAACAAAACTTAATAAACAGCGTGCTAGAATAACCTCCCGAGCTTTGG
TTTCAGTGATCGAAGATGAAGATTCGCACCCTTACCAAGTGTTGCCAGCT
GGTCCTGCTGTTGAAAACGATCAACCTGTTACTGCCAACAATGTCGACGA
AAAAGGTTTCATCAAAATTGCTTTTTTCTTCTACCAAACAGCATCGGTGA
TCCGCATCAGCGCCTCTGCAAAGACCACTTACAAGATGCCAGCAATTATG
GATATATTGACGTCTTTTTTCAACTTGAAACTAGATGTCCAGTCTTCGGA
CACTTTTGATACATGTCCTTTGAATACGGATAACGTGATTGCGATCAACT
TGTTGAAAACTAGCGTGCTGTTTACTTCTTTTGGTATTGTTCTTGTCTTC
ATTCTGATCCTTTCTGTCTCAAAGAAATTCTCTTTTTGTAAGAGACGGGA
GAGTTCACCAGAGAAGCAGGAAGTGACATTACTGGTGAAATTAAAAGGTG
CTTTCATCCAATTACTTCTCCTTGGATATGCGTCCATAGCAACAATATGT
CTCCAAGCTATCAATTGCATCGAGATCACTGGCCAATTATATCTTTACGT
TCAAGCGACCATTCCGTGCTACCGATCCTGGCAAAAGGTATTTTTCATGG
TTATTGGTGTTTGGGTAGTGCCGTTTCCGTTCGTTATTTATATCGGGTGT
CGATTGTTCCAAGCGAATCAAATCGATACAAATAGATTATTATCGATTTT
CATTTTTCCACCTTTGGTGTTTTGGTACTTATTGAAGCATCTCATCAACA
GAATCTCGACATCATCTCCAGAAAGCGAACTCGTACAAGGAGAACGCAAC
TACATTCTATCGATTCTGAACGGACCTTTCCGCTATCGAGATGGCGAGCT
CCGTATCATTTGGGAACCGGTCCTCATCATCCGGCGTTTTCTCTTGATTG
TATGCTGCACATTCATCATTTCACCTACAGAGAAACTGTATCCTATGGCC
GTCTTGCTATTGTTCTTTCTCATGCACGATTTAGTTGCTCAACCGTTCAG
CCAAAGCTTCCTCAATTATATGCAATACGCATCCATGCTACTCCTGTGCT
TCCTGTTGGTTATCAACCAATTCTGGGCATTCTCCACCGACGTCGATATC
ACTCAAAATCCAACATATCATCTGATGGGAAAATTATTCATTATCTTGGA
AATGATCATTTTGCTTTTGCCGATATTCATTTTGGTTGTATTTCTCATTG
TAAAGATATGCAAGATTATTTTTAAAATGTTTACTGGTAAACAGGACTAA
ATGATAGTGCTTGCTGTCATCATTTCTCAACTCATCGCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14208MSTRG.14208Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14208.1.p1.exon2MSTRG.14208.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14208.1.p1.exon1MSTRG.14208.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14208.1.p1MSTRG.14208.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117_pilongenomesc0000117_pilon:646172..649633 -