MSTRG.15321.2.p1 (mRNA) -

Overview
NameMSTRG.15321.2.p1
Unique NameMSTRG.15321.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000134_pilon:638244..641392+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15321.2.p1 ID=MSTRG.15321.2.p1|Name=MSTRG.15321.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3149bp|location=Sequence derived from alignment at sc0000134_pilon:638244..641392+ (Clytia hemisphaerica_ch_hm2_pilon)
TACACTAAAACGATATAAATGAATGACAAAAGATGGTATTAAGTTGTTCA
AAAGAAAAGGTGGGAATTATTAATAAGATTGATTTGTCTGACGTGAAAGA
TATCGATGGTGATGTTGTTTTCGACTTCAATGTAAAAAAACGAACGAAAG
AGAACAGACGTGTTTCAAGAAGACACAACGAAAGATTTTTTGCCGCGCCT
CGAAGATGGGACGTGTCACTGTATTTTCGATTTTGGTGCTGGTTGTCTGC
GTTTATACTGGTATAATAATTGATTTCAATATATGATCATGTTTTTTTCG
TATCTTTCTCACTACTAAAAGTGGAACTCAAATTTCTAGGCATTGAAtaa
atggaaatcaaaaaaacaaatttattttttcgagatttccttttttGTGC
AGTATACTCTTCCAAGCCGAATGGAAATTTCCGAGCTTGTATATAGACTA
GCTAGCGTCTTTTTTCCACGGGACACAGTGCTTATACAAAGTTCTTATAA
GGACAAATAAATTGCCGTGGGACAGTAGTGGTTACATAAAGTAAAGTTTA
TAACGGAAAAAACCTAGTTTTTGCCAGAATTAGCTAATTTTTCTCTTCCA
GTTAAAAgctttgccactactggcaaaaaccaggTTTTTATCCGTAGAAG
ACGACACGTCGTGAGCCCAATGCAGCGTAAACTgtagcgaaatacaacga
catGGTTTACTAGTTTACATGGTGTGCTAGTATACAGTGTTTTTTCAACG
TCCATCGAATGTTCGTTAAAATTCATGAATTCAAGTACATGAACATAACG
TCGTATGCCGGTTAGTTTTTGTCATCTAAtgtctctaattcgatttaact
ttatatattattttctcTTAGGTTATGACGCCGCCAGTATCCAAGAACGA
GATATTTCAAATACTTTGGAAAGGTTGGATAAGTCCTTAAAGTCACTCAC
AAGTAAGATATTCATaaaatttctaagaaaatcTCTGGTCTGGAAattaa
aaatccagggtggcctaaaaaaaggaaaaaaattcctaggtggtcctgaa
aaaattgaaaaagaatacaGGGAGCcacctttcccaaaaaagaaCTCCTT
GACAGAGAAGGTATAATTTCTTTCTGGGATAGGGCATTTAGATGAACATC
TTTCTTTACCGTAGATGAATTAAAAGATGAAGTGAACCATGTGAAATATG
ATCGAGGTGATGAATTTCTTGGACACAAAGCTGTTAACACCAAAAGACAA
ACCAGTGCAAATTCAATCTGTAAGTCTTGAATTTCATTATTCGCCAAAAA
AGGGTCAATTACTCAAAAGAAATCGGGTACGTCTTTTggaaaatcgatga
aaaattatgaaaagctAAGAAAAAAGTTGGACGTTGAAGCAATCTTACTA
TTTAAACGGGCGCCGTACCAGATGTGCTccgaaaacgaccgtacgtgcgg
cccaaaattagatCGATGAAATCAGATCTTTATACAAAGCAGAAAAAATT
TAGCagaatttgagtaaatttgggcgaaaagtcgacccttacggtgtatc
cgtttttttgaaagattgaccattttaagggaaaatatggtcagatatta
caaattttgcactttttcttatcttcgcTTAtctcgacccttacagtgta
ttttgTGAAGCTTTGAAAAAGGACCCTCAAGGTTCGCACGTACGGtcggt
cgtttaccttgagtgtcccccccccGGGCTTGAGACTTCATCGTGCTTGC
TTGATAGTATTTatcgctctcatgttgtcttctgaccagccaccagaacc
gttggaaaaccaacggatccagcgagactcgaactcacaaccatgccatt
cgcgggcTTTTGCTCTATCATTGAGCTACTATTCCATGTGGAACCCGAGG
ACTCAATTGCGACTGGGTAGAGCttgaagtgaattcttgtctactgactg
gtCAGAGACGGTGAAATCCATCTCCACATATTCATGATTTACGAAATCAT
TTTCTCTTCTTCAGTTTGTGATTTCTCACGCTTCTCCAGCAATTGTGATA
TCAAATTTGTCGCAGAAGATCACAACGAAAACAAACCAAAATGGGAATTA
CGTCATGATTACAGCTTCATTAGAGATTCTTCGTCACCCATTGGTGGATC
TTTCTGGTATGCGGACATCACTGATGTAAGTCAAACGAAaagaagccatt
ctattggttataTTCAAGTATTACATCCCTTCCAACCAATAAaatggctt
cattccgtttTGGAGCAAAACGGAACCGTCGCGTGCGAACATGGTTTTAA
GCAcaacccttctcacagatccggtaggatttttcagccattGGGGTATA
AATAACGGATCAAAACTCTATGGGGATAGATATTCCCCTGTTCTTCATGA
CTGGGGgtttgaaaatcttttcttttaagttagagaattcagtggggatt
ggaaaaatagcacattattttgcagtgaggcTATTATCCAAGTAGGAGGG
TTTttcactgggtctgtgagatgAGGATGGATAAGCAATCTCTAATTACA
GGGAACTAcaattacagttgactctctctaattcgagcttCATCAGACTT
TCGAATTAGGGAAAAGTACGAATTATAGCGAGTATTTTACGGTCGGATAT
TGCAAATTACTTTAATTTTTCCTTCCCAAAAATTATGGAGCATTTTGACC
GACTCACTTGAAATTGTAATTTCCATGTTTCtctaactacacgtttttta
aagcataacgctttttaaagcataacgctttttaaagcataacgctttga
tggccaaaatattaagaacaagtgaaGGCTTTGCGGATTCTAAAACAAAT
ACTCACGAAATTGTTAAATAATCTTCAGGTTTggaactcaaaaatttaag
aacatccgcaggcttcagaaattttggcTGTCCTTATTAAAAACATGTCT
GttattaaaattttatgtaACAAACTTGAAGATTATTATTTCAATGTCCC
TTTAGCTAAGATATCTCCTGTGCTATTTAGAACCATCCAACATTTTGTCT
AACCAACTTGAAAATCGTTACTTTGATCCATGTCCCTTTAGCTAAGATAT
CTCCTGTGTTATTTAGAACCATCCCAAGAACGAATTCACAACATTGAAC

Coding sequence (CDS) from alignment at sc0000134_pilon:638244..641392+

>MSTRG.15321.2.p1 ID=MSTRG.15321.2.p1|Name=MSTRG.15321.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2175bp|location=Sequence derived from alignment at sc0000134_pilon:638244..641392+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGACGTGTCACTGTATTTTCGATTTTGGTGCTGGTTGTCTGCGTTTA
TACTGGTTATGACGCCGCCAGTATCCAAGAACGAGATATTTCAAATACTT
TGGAAAGGTTGGATAAGTCCTTAAAGTCACTCACAAATGAATTAAAAGAT
GAAGTGAACCATGTGAAATATGATCGAGGTGATGAATTTCTTGGACACAA
AGCTGTTAACACCAAAAGACAAACCAGTGCAAATTCAATCTTTTGTGATT
TCTCACGCTTCTCCAGCAATTGTGATATCAAATTTGTCGCAGAAGATCAC
AACGAAAACAAACCAAAATGGGAATTACGTCATGATTACAGCTTCATTAG
AGATTCTTCGTCACCCATTGGTGGATCTTTCTGGTATGCGGACATCACTG
ATAACCATCCCAAGAACGAATTCACAACATTGAACATGGGACGTGTCACT
GTATTTTCGATTTTGGTGCTGGTTGTCTGCGTTTATACTGGTTATGACGC
CGCCAGTATCCAAGAACGAGATATTTCAAATACTTTGGAAAGGTTGGATA
AGTCCTTAAAGTCACTCACAAATGAATTAAAAGATGAAGTGAACCATGTG
AAATATGATCGAGGTGATGAATTTCTTGGACACAAAGCTGTTAACACCAA
AAGACAAACCAGTGCAAATTCAATCTTTTGTGATTTCTCACGCTTCTCCA
GCAATTGTGATATCAAATTTGTCGCAGAAGATCACAACGAAAACAAACCA
AAATGGGAATTACGTCATGATTACAGCTTCATTAGAGATTCTTCGTCACC
CATTGGTGGATCTTTCTGGTATGCGGACATCACTGATAACCATCCCAAGA
ACGAATTCACAACATTGAACATGGGACGTGTCACTGTATTTTCGATTTTG
GTGCTGGTTGTCTGCGTTTATACTGGTTATGACGCCGCCAGTATCCAAGA
ACGAGATATTTCAAATACTTTGGAAAGGTTGGATAAGTCCTTAAAGTCAC
TCACAAATGAATTAAAAGATGAAGTGAACCATGTGAAATATGATCGAGGT
GATGAATTTCTTGGACACAAAGCTGTTAACACCAAAAGACAAACCAGTGC
AAATTCAATCTTTTGTGATTTCTCACGCTTCTCCAGCAATTGTGATATCA
AATTTGTCGCAGAAGATCACAACGAAAACAAACCAAAATGGGAATTACGT
CATGATTACAGCTTCATTAGAGATTCTTCGTCACCCATTGGTGGATCTTT
CTGGTATGCGGACATCACTGATAACCATCCCAAGAACGAATTCACAACAT
TGAACATGGGACGTGTCACTGTATTTTCGATTTTGGTGCTGGTTGTCTGC
GTTTATACTGGTTATGACGCCGCCAGTATCCAAGAACGAGATATTTCAAA
TACTTTGGAAAGGTTGGATAAGTCCTTAAAGTCACTCACAAATGAATTAA
AAGATGAAGTGAACCATGTGAAATATGATCGAGGTGATGAATTTCTTGGA
CACAAAGCTGTTAACACCAAAAGACAAACCAGTGCAAATTCAATCTTTTG
TGATTTCTCACGCTTCTCCAGCAATTGTGATATCAAATTTGTCGCAGAAG
ATCACAACGAAAACAAACCAAAATGGGAATTACGTCATGATTACAGCTTC
ATTAGAGATTCTTCGTCACCCATTGGTGGATCTTTCTGGTATGCGGACAT
CACTGATAACCATCCCAAGAACGAATTCACAACATTGAACATGGGACGTG
TCACTGTATTTTCGATTTTGGTGCTGGTTGTCTGCGTTTATACTGGTTAT
GACGCCGCCAGTATCCAAGAACGAGATATTTCAAATACTTTGGAAAGGTT
GGATAAGTCCTTAAAGTCACTCACAAATGAATTAAAAGATGAAGTGAACC
ATGTGAAATATGATCGAGGTGATGAATTTCTTGGACACAAAGCTGTTAAC
ACCAAAAGACAAACCAGTGCAAATTCAATCTTTTGTGATTTCTCACGCTT
CTCCAGCAATTGTGATATCAAATTTGTCGCAGAAGATCACAACGAAAACA
AACCAAAATGGGAATTACGTCATGATTACAGCTTCATTAGAGATTCTTCG
TCACCCATTGGTGGATCTTTCTGGTATGCGGACATCACTGATAACCATCC
CAAGAACGAATTCACAACATTGAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15321MSTRG.15321Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15321.2.p1MSTRG.15321.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15321.2.p1.exon1MSTRG.15321.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15321.2.p1.exon2MSTRG.15321.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15321.2.p1.exon3MSTRG.15321.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15321.2.p1.exon4MSTRG.15321.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15321.2.p1.exon5MSTRG.15321.2.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134_pilongenomesc0000134_pilon:638244..641392 +