MSTRG.13342.2.p1 (mRNA) -

Overview
NameMSTRG.13342.2.p1
Unique NameMSTRG.13342.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000105_pilon:532368..536561+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13342.2.p1 ID=MSTRG.13342.2.p1|Name=MSTRG.13342.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4194bp|location=Sequence derived from alignment at sc0000105_pilon:532368..536561+ (Clytia hemisphaerica_ch_hm2_pilon)
AaaatttcgaccaatcaaatgaATGTATGAAAATCATGTGACACCGTCGt
gcaaaaatgtaaacattgaaaaaatttttttaaagggacatgCAAAAGTT
GTTTTGAAGCTGTGAGCTGGTACAAAATTTTTCTAAGTGACAGAGAATAC
AATTTAATCATGACAGAAGTGGCATCATTATTAAGAGAGTCTATTGGCAG
TGTATGTAAAGATGAAATCGATCTTACCCCTCCAGCTAAAAGGGTTAAAA
TGGAGAGTGAAGCTGAAAAAGTGGACGAAAAAAGAGAACGTCTTGAGTCA
AGATTGATCAGTGTTCTTTCTTGTGTTATATGCTTTGATTTACCCTCTGG
TTCCATATATCAGGTAAGACATTTCTGATATTTGTCAATTATATTGTGTT
ATTAAACCCTGTCACCTGTTGAGAAATATTAGCAGTAGTGCTTTGTAATG
ATTCTTAAaggaactttttttgaaaaaagagcAAGCCCTAGTTTGCCTGA
TTTTTACCAGTTTACTTCAAAATTGTTTCCATTTTTAAAGGTTAAAGCAG
GTGAATGAATGACAGAATGAGAAAGGAGATGTTACCACGTTACCTAATGC
TGACCTGgaaaagttttaagaatttGTAATTATAGCCAGAGTAACTATGG
CCGCCTGACCTGTCACTAGGAGTGCCTTTTTCCCATTCACACTGTTACTA
TGGGTCACTGCATAATTCTGcaattgaaatatttatgaGTCAACTGTTCC
TTTTATAGTGTCTCCATGGACATTTGATGTGCATTGGATGTTTTAATCAC
CTCCTTGCTGATGCTAGGCTGAAAAATGAGCAAGCACAATGCCCAAGCTG
TAGAGCTGACATAAGTTCTAAGAACTCATCTCGCAATTTAGCGGTTGAAA
AAGCGGTATCTGAACTGCCAACATACTGCAGATACTGTGAAGATGAATTC
CCACGAAACCAAATCCCTTTCCATGAAAAAAGTAAATGTGACCAGAggta
tgtttagatttttttctacaaGTGTAACATTTTCTTTTAACCTTTAAGTA
TTCTCTTTTCGTACATTAATACACGtcttattttcctttttctcttGGTG
TGTGAGTTTACTATTCACCACAAACCAGTAAAATTTAATACATAGGgtat
tgttatattttgtatgtaactatattttatttgtttacagtattttttta
aaaaaatttcaaactttgaatatcCTAGATTATTTTATTGCAATTGTAAT
TCTACtttttttAATTCCATGTAAATATGTACAGTTTTAAGccttttttc
ccaaaattaCGTAAATAGTTTGTCACagcttttgaaacaattttgatACG
CTATTACATAATTTGCAtgagatttttatcaaattttgttaaaagtggCT
CTGCTTCCATTTCTATAATAATTTTGCAGCTTCTTCTACTTTTAAATAAA
TACTTTGCATTCTTTCATGATCATTATCAAACTTTagagtttttgaaaat
tgaaattgtatATTATCATGTTATTGTCTCTCTCACCTATGCAGTTATTC
TAGGAGTTGATGGCAAAGAAATTTCAAGGAAATGATGATAGACTTGGAAA
ATCTACATACTACATATATTTGTGATGACACATACTCTGTAGTAATGACA
GGTAAAATTACGCCAACCTTTAGTTCATATATATTTCTAGACATGCATGA
AGGTTACTTGAGTTAAGCACATTTCactaacaaaaagtttttgtttattt
gaaagtcTTCTTTTGCTGGTGCGGgggtaaattaaaattttgattgaatt
atatatgttttgaaattcgatttTCCATTCATCTGTCATCCTAGTTCATT
TCAATcttgtaaatattttaattttctagTTTTTAATTTATCAATTATTT
CAGATGTAAATGACAGATGAAAGGAGAATCTTTGCCCAAAACTCAACCAT
TTACTCATAGTATAtagaaaaacagaattttttcaatgaataataATGCT
CTATTTCAAAGATATCTAAATCATGTGGTTTTAGTTTAAAGCTTCTTTAA
TGTCACAAATTAATCTTCCTATAAATAAAACATAGAGCTAGTAATCGttt
caaaaagaatatttacAACTCTTTCTTGTAAAACTATTTCAGCACCCACA
TCAGCAAACTTCATAAAGCTcactttttaaggaaaattctCGCATCATAA
TGCTACCCTTGTTACAAGATAACACACAGGATGCAGAAAATGCTTGAGAA
GATAGACTAAAAGCCTTTGCTTTACAAGTTCCCTTCATGCATAGACAATA
TTTCTAAGTCAACTGGTATTCTGCGGTTGGGGGGTCCCTCTAAGATCTCG
ACTTAGAAATATTGTCAAAAGTATATTTGATAATCTAacctaatttcttt
cttttcaggTTTTGCAAAACTTGTGAATGAATTTCTTAACActctatttt
tgttttttctttagacCAGCCTGCTGTGAATATAAGGGCTTAGGTTGCAC
ATGGGTAGGTGTTCATCACCAAGTGGAGTCTCATGTCAAGGACTGTTTGT
TCCCACAGAAATGTGGAGCAGACCTTCTGGAGAATGTCAACATCATTGCT
GCAGAATCTAACGAGGAATTGAGGCGTTATCAAGACCTCTTCCAAATGTT
ATCGTATGAAAAAATCACTAATTGTGgtaacaaaatctttttgggGTTTT
TTACTCTTATTCAGTTATAAACattcctttcattttttttgataCACGTG
TGATTTAGTTATCGTATGCAAATCTATATGATTGATTTATGTAACCGAGG
ATTTAAATTGTGTGACGCAGGTCACAGAAAGATTTTCTAAACTTACATAA
ACGTGTTTTGCTTACTCTGGACAAAAATTGGGCTTTTaccaacttttcaa
aatttttaccaaGGAAACTCTAATTTTTTAGACATTCAACTATGCCCAAG
TCGCAGTGATGATTATATTCCCAAATTGTATTACGAGACAAACAAGTTCA
CTGCTTTCGATCAGTTGTGGACAATCAAGGCCAAAGTTGTCGGCAATGAG
AAAATTGCAGCACGTTCACTCTCATACCAATTAATATTAAAAGGTATTAT
ATGATAAACATATTTTGAATGTTTATAAAGACAGTTCAATGCtcacaaaa
acaacaacttctTGTCATGTGGGTTGTACTTTGAAACGTCACGTGAGAAT
TCGTTAATTAGCCATGACATTAAATCGATTCAGCCGGttgctttagaaaa
aaatttctaatattttttgcAAGGATCAGCTCAAAAgtttttctcatcaa
ttttcGTCAATTTAATACGTGTAAACATTTTACGGTAAGAGTTATAAAAG
ggtaatcagatggtttgagatatttggcctgCAAAAACCTTCTGGGGTCC
TGAGTAGAACCTCTAAGAATTTGTAGTTTTTCCCAAAGTTCTTGTGTTTT
GCACGGTTTCTTGCgtttaaattctattgttttcttactaATGGTTTAAA
AATTAGATATCTCGGCAAATATCACAAACCTTCTGGTAATCCCTTTAATT
AAGAATGCCTTCAATATGTCTGAAACTATTGACCTTAAAATATTAAGTCT
AACTATGCTGTTATTTTTCAGGAAAAGGGAACCACGAAATAAAATACTTC
CTGACGAAAGGACCCTTTGGAGATGCAAAGATCTCACCTGAAACACAACG
CTTCGAATTTCGCGATGACAACAAAGAGTCAGACTATCATCACATCGCGC
TGACAGAAGAGACCGATTGTAACCGCCTGCTAGCCGCACGCACAATCAAT
TTCCGAATCATGATGTTTTTAGTCAAGAAGTgaacaaaaaagcttttctt
tgTGTGtgtgaaaactgaaaatttgtcATGTGAATTTTTTACAAGGCTGT
GCAAATAGTTTCATGGTTTCATTTTTAGATTCACATTTCTTTATTGTAAA
AGTgtcattcttttgtttcaacGATCTCTTGAACTGAATTGATAAAATTA
TTACTTTGAAACTCCTGGATATACAAAAGTCAGCTAgaacttttgtttta
aagatatttctttCTTCCACTTTAACTTCCAGCCTTTTGATgtacataca
tgtttttttataagaacatccaaaatctttgaagccttctggtgttctta
gctttttgagatttaagcctaaaaatgttcttaaagtgttctta

Coding sequence (CDS) from alignment at sc0000105_pilon:532368..536561+

>MSTRG.13342.2.p1 ID=MSTRG.13342.2.p1|Name=MSTRG.13342.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1377bp|location=Sequence derived from alignment at sc0000105_pilon:532368..536561+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACAGAAGTGGCATCATTATTAAGAGAGTCTATTGGCAGTGTATGTAA
AGATGAAATCGATCTTACCCCTCCAGCTAAAAGGGTTAAAATGGAGAGTG
AAGCTGAAAAAGTGGACGAAAAAAGAGAACGTCTTGAGTCAAGATTGATC
AGTGTTCTTTCTTGTGTTATATGCTTTGATTTACCCTCTGGTTCCATATA
TCAGTGTCTCCATGGACATTTGATGTGCATTGGATGTTTTAATCACCTCC
TTGCTGATGCTAGGCTGAAAAATGAGCAAGCACAATGCCCAAGCTGTAGA
GCTGACATAAGTTCTAAGAACTCATCTCGCAATTTAGCGGTTGAAAAAGC
GGTATCTGAACTGCCAACATACTGCAGATACTGTGAAGATGAATTCCCAC
GAAACCAAATCCCTTTCCATGAAAAAAGTAAATGTGACCAGAgTTATTCT
AGGAGTTGAATGACAGAAGTGGCATCATTATTAAGAGAGTCTATTGGCAG
TGTATGTAAAGATGAAATCGATCTTACCCCTCCAGCTAAAAGGGTTAAAA
TGGAGAGTGAAGCTGAAAAAGTGGACGAAAAAAGAGAACGTCTTGAGTCA
AGATTGATCAGTGTTCTTTCTTGTGTTATATGCTTTGATTTACCCTCTGG
TTCCATATATCAGTGTCTCCATGGACATTTGATGTGCATTGGATGTTTTA
ATCACCTCCTTGCTGATGCTAGGCTGAAAAATGAGCAAGCACAATGCCCA
AGCTGTAGAGCTGACATAAGTTCTAAGAACTCATCTCGCAATTTAGCGGT
TGAAAAAGCGGTATCTGAACTGCCAACATACTGCAGATACTGTGAAGATG
AATTCCCACGAAACCAAATCCCTTTCCATGAAAAAAGTAAATGTGACCAG
AgTTATTCTAGGAGTTGAATGACAGAAGTGGCATCATTATTAAGAGAGTC
TATTGGCAGTGTATGTAAAGATGAAATCGATCTTACCCCTCCAGCTAAAA
GGGTTAAAATGGAGAGTGAAGCTGAAAAAGTGGACGAAAAAAGAGAACGT
CTTGAGTCAAGATTGATCAGTGTTCTTTCTTGTGTTATATGCTTTGATTT
ACCCTCTGGTTCCATATATCAGTGTCTCCATGGACATTTGATGTGCATTG
GATGTTTTAATCACCTCCTTGCTGATGCTAGGCTGAAAAATGAGCAAGCA
CAATGCCCAAGCTGTAGAGCTGACATAAGTTCTAAGAACTCATCTCGCAA
TTTAGCGGTTGAAAAAGCGGTATCTGAACTGCCAACATACTGCAGATACT
GTGAAGATGAATTCCCACGAAACCAAATCCCTTTCCATGAAAAAAGTAAA
TGTGACCAGAgTTATTCTAGGAGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13342MSTRG.13342Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13342.2.p1MSTRG.13342.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13342.2.p1.exon1MSTRG.13342.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13342.2.p1.exon2MSTRG.13342.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13342.2.p1.exon3MSTRG.13342.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13342.2.p1.exon4MSTRG.13342.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13342.2.p1.exon5MSTRG.13342.2.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13342.2.p1.exon6MSTRG.13342.2.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000105_pilongenomesc0000105_pilon:532368..536561 +