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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011886 ID=TCONS_00011886|Name=TCONS_00011886|organism=Clytia hemisphaerica|type=transcript|length=1012bp
aacaataataacaaatatttttacACCAATGGACATTTGGAAGAACTCAA
ATGCTCAACGATATTATGACGTTATCCAAAGATTTACATTGTGTTTTGAA
ACAAAGATATCTTTCGACCATTCATTTCATGgaGCCATCAGTTGCCGTAA
TGTTGATAATAATGTCCCATACTACAATATGGACATGTTTGGCGAAGAAA
TGCACCAACAACATCACCAACGCAAAGAGGTCTGTGAAAACCTTGTGACG
TGGACCAAATGTCAACGCGAAGAATGGAAACATGGTTCTTGCGCATCCAA
GAATTACAATTTCGCTAAAATGTGTCGCAAATGGTGTAAATTCTGCTAAA
AACAATCgtaaaaaaagtttcaagggaGTTTCCCTAAGCATTTAATAAAC
ACTGAtcataaaattaaaatattttgaaggatGTATATTATAGTTTAAGA
TACTTATATTTTAATATAGTAATGATATTTTAAGCACTATTGCAATACTT
GGTTATAAAAAAATCCGTTGCGGTGGTTAGTTAACTGTTATcaccctgtg
tcacagatccgttgggccccactggaaaatttggcaaaaatttcgtccac
ggtttgaaaaataccctagaatttcagccccactaggaaattgactttta
tttcatccccattcgacaTTCAGTGTTTAAAGATTGCACTTCAAAACTAT
CCCCACATaatttttttgccttgaaacaatagaatttctatccccattgg
gatttcaataggaatttttattcccgtggagaaaaaaagttccaccgggg
ctgtgagacaggggtgtactgtTAAAACATTCCCTCAATCCCATTATTTG
cttattttgacaatttttatttgtttattcaacatacaaaatacttttta
cATAATATTGTATTGGCCTCTTGTCGTTAGCTTACAATAAACTTAATATA
TAGATACCCTGTTAATTATAATTGTTGATGATTGTTTATTTTGGTGAAGT
GAATTGTGTAAC Run BLAST on NCBI transcript from alignment at sc0000133:503895..509283- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011886 ID=TCONS_00011886|Name=TCONS_00011886|organism=Clytia hemisphaerica|type=transcript|length=5389bp|location=Sequence derived from alignment at sc0000133:503895..509283- (Clytia hemisphaerica)
AACAATAATAACAAATATTTTTACACCAATGGACATTTGGAAGAACTCAA
ATGCTCAACGATATTATGACGTTATCCAAAGATTTACATTGTGTTTTGAA
ACAAAGATATCTTTCGACCATTCATTTCATGGTAAAGATTTATTCATTTT
CCAAAGTTTATACTTATTTCCTCCTGATATAGTAATTCCAAGTTAGATTT
TTAGACTTTTGATTGATTTTTATCTTAACCATTTAATTATTTCGCCCCAA
ATTTTAAAACTAGAGACGCAGATTGTTTTAAATTTACTGGTTCGTTGGTT
TTGGACAAATTTCATTCTCACGGTTTTCTAATATTGTTTTTGTAAAAAGA
AGATGTTAGTCAGAAACACATCTGCCCTTAAATCTTTAGTTCATCACTCA
AGCCCATAATATATCTGCAAAATTAAAACTTCTAAACTGAAAACAAAACG
CCTTCAGTGTCTAGTAGCCTAATTCAGACACTCGCGCTAGCAAAATTTAC
ATTAGATATTTGTAAAATATTCTTTAATTTACATAAACGTTATTTTGAAA
AATAGTTTCGAACTTTATTTTTTAAGTTAAAATATTTTTACAAAAATTTA
ATCTTCAAAGCAGAATTTATTGACAAAATTTTTACTTTGATCCACCCATG
TTGCCAAACCAGAAAATGGATTTTTAACAAAACTTACACAAACAAGTCGA
AATAGAAACCAGGCCAAAAAGATAACACTGGCTTTACTTCAATTGTAAAA
GATGTGGTTTCTACGCCTGAGGAAAATTTTGTTATTGGAAATAATAAAAT
ATTGTTAAAAACTGATCATATTTTCCACTGTAAAATATGTACAAATGGAT
TTCCTTGCACTCAAAGATAACATTTCAGCAGTTGAATTTGAACAGCTAAC
AGAACAACATCACTTTGCAGAAAGTTTTCACTGACGGCTGACAATAATTG
AAGATTTTTGACAATGAATTCTTCTATGGTGATTGCATTTGCTATGTTGC
TTGTTATTGGTTAGTGATATTGCTGAATGTTTTCACTTTAATAATTTAAT
GATGATTTTTCCCATAACGTGCTGTACTTTTAGTTGCTAAGAAATTCTCC
TCTCGCTCAAAAAGCATTCTTCCACTTATCAGGGGTTTCATTGAAAGCAG
TTTAATCGCATTAAAAGCATTTCTTCCCGATTTCGTTATTTCATGTATTT
TTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCTATGTTTGTTCGTC
CGTCCGTTCGTTCGTCTGTTACCAACTTTTCCCAGGATTGAATCATAGGA
ATTTTTTGATTTTTGGTATAAAGGTGCAAAATGGTGGTGGCCAAAATGTG
ACGGAGCCCGATTTTCGAAAAAAAAATTTTTGGGCCAAACTTGGGCCAAA
AAACGGCTAAAAAACGGGTTTTTTGTACTTTGTGAAAAATTGGATCATTA
ATTTTTTCTGAATTTTTGCATGAAAGTAGGGTACCATCATAGGTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGATT
TTTGCAAAAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAA
TCACTATTAATAAGCATATATCAATGTTCTTATTCAAATTACTCAATTTT
TTTATGAGATAGATGTTTTTATTGCTCACGAGGTCTTACTTTTAAAAAAT
ATGTGTGTTTAAACATGCAATTTTGGTTGCTTGGCGTGTTTTTATAGAAC
AACTGGCCAAATTCGATATTTTTTATAAGCACATTATCAATTACTTAGGT
ATTAGCTTTTCTCGAGATTAGCTCTTTCATTCTTTATGATTTTTTGCACA
AAGATGCATAACTATAAACCCTTGAATGTGTCGGAGCCCGATTTTCGGGG
AAAAAAATTTTGGTCAAATCTGAGCCAAAAAACGGCTAAAAAACGGGTTT
TTTGGACTTGGTGAAAAATTCGATCATTAATTTTTTCCAATTTTTTGCAT
GAAAGTAGGGTACCATCATAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTTTGCTCATGAGGGCTGAATATGTGTTTTAAGACACAAA
ATTTTGGTTGCTTGGCGTGTTTTTATAGAAAAACTGGCTAAATTCGATAT
TTTTTTATAAGCACATTATCAATACTTAGGTATTAGCTTTTCTCGAGATT
GGCTCTTTCATTCTTTATGATTTTTGCACAAAGATTCATAATTATAAACC
CTTGAATGTGACGGACCCTGATATTTGAAAAAAAATGTTTTTGGGCAAAT
TTGGGCCAAAAAACGGCTAAAAAGGGTTTTTGGACTTTGTGAATTATTGG
ATCATTGTTTTTTTCAGATTTTTTGCATGAAAGTAGATAAAAGATGGCTC
AAGCTGATTTTTGTAAAAATCGAATTTTTTAGCTCAAAAAACGCATCTTT
ATCTATAAGAATCACTATCAATAAGCATACATCAATGTTCTTAGCCAAAT
TACTGAATTTTTTGATGAGATAGATGTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAAGAATATTTCAAGGGCATGAAATTTTGGTTTCTA
AACGTTTTTTTATAAGAAACAAGCGACTAATTTTAATAGATCGTCACTAT
TTGTGTTCTGAATGATTGTTTAACGGTCATGCTCACGTAGATATCAATTA
TGTACGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTT
CTTTTTCATTTTAGGAGCCATCAGTTGCCGTAATGTTGATAATAATGTCC
CATACTACAGTAAGTGACATTGAACAACTCCAAAATAACTCATTTCAGAG
TTTTTTCAACTCGGTTCTGCTAAATGTTCTGTGACCACTGACCTTTATAT
ACCCTGGACCAATCTTCTTAATCCCAGCCAAGCAAAATCTTTGATCGGAG
TTTTTTGAAAACTGGTACCCTAATGGCGGCACTACTCGATAGCGGTGTAA
ATGCATCGAGAGCGTTAGGTCTACTTTTCCTCGAATTCTTTTGACGATGT
AGCGGCGTTAGACGTTAATTTTTAACATTGCAATGGCTTCTCCTCGGGTA
CCAATTCCAAAAAAACTCCAATCAAAGATGGCAGATATTACTTGGTCCAG
GGTTATATAAAGGTCAGTGTCTGGGACCTTGTTTGCTGAGAATTTAGTAA
TAGTGAGGTTAAGTAAATCGGTAAAATCACGACGACGAACGAAAATTTAA
CAGACAATCAAATTTCGTATTTTCATTAGCCTATTACATTTTTCGTCCGT
CGTCGTGATTATCCTGGTATGCTTAACCCCAGTAATAGTAATAGAGTAAT
AGAGTAATAGGATATGCGGAAACTAAAATTAGCACCACCAAGTACTATTT
CAGATATGGATGTGAAACCTTTTCCTACATCCTCGGAGTAAAATGAGAAT
ACTTTAGGCGTAGAAACTTTCGCGATTTTCGCGAATTTCGGCCCTTTTCG
CGAAAGTAAATGTCTTTAAAAATTCTAGGAAGGGCCATTCGCGAAAGTTT
ATGNNGAACTTCAAACTTTGAATAAAATGTAACTTTTATGGCACTTTTTA
GCCTGCTAAAAGATTAATAAGTCAAAGAAAATTTGACAAGCCAACCCAAA
AAGTATTTGTGTCTCTAAGCCATTTTTTCATGTGAAATTTCTCAATTTTA
CGTCTTGATTCGCGAAAGTTTATGCTCGCGAAAAATATTTTTCCGTTAAA
TTCGCGAAAGTAAATGTCGTGAATTTCGNTCTTGATTCGCGAAAGTTTAT
GCTCGCGAAAAATATTTTTCCGTTAAATTCGCGAAAGTAAATGTCGTGTT
TTTCGTTTCTGCTCGCGAAAGTTTGTACGCCTAAAGTATGCTGAACATAA
ACCTTACCTTTTAACTTGACTCCTTGTCTTATTTTTTCCAGGGAAAGGAG
TGGTGTCCTCCCTACCTTCGGGTTGACAGCTAGAGATAAGTGAGCCTTCG
GATTGCCTCTAACTACGATCACAAATTACTTACTTATTCTTTCGGGACGA
GATGAACAAGCTCTTATATGATTTTTTGGTCGTGAACTAGTAATAAAACA
ATTTTGTCACTTTTTCTAAAGAACATGTCATTTTTATTACTTCAAATGAC
CAATTATTAAAGTATCTTATAAAACCTCCATCTCATCTGACTTATTTTTT
CAGATATGGACATGTTTGGCGAAGAAATGCACCAACAACATCACCAACGC
AAAGAGGTCTGTGAAAACCTTGTGACGTGGACCAAATGTCAACGCGAAGA
ATGGAAACATGGTTCTTGCGCATCCAAGAATTACAATTTCGCTAAAATGT
GTCGCAAATGGTGTAAATTCTGCTAAAAACAATCGTAAAAAAAGTTTCAA
GGGAGTTTCCCTAAGCATTTAATAAACACTGATCATAAAATTAAAATATT
TTGAAGGATGTATATTATAGTTTAAGATACTTATATTTTAATATAGTAAT
GATATTTTAAGCACTATTGCAATACTTGGTTATAAAAAAATCCGTTGCGG
TGGTTAGTTAACTGTTATCACCCTGTGTCACAGATCCGTTGGGCCCCACT
GGAAAATTTGGCAAAAATTTCGTCCACGGTTTGAAAAATACCCTAGAATT
TCAGCCCCACTAGGAAATTGACTTTTATTTCATCCCCATTCGACATTCAG
TGTTTAAAGATTGCACTTCAAAACTATCCCCACATAATTTTTTTGCCTTG
AAACAATAGAATTTCTATCCCCATTGGGATTTCAATAGGAATTTTTATTC
CCGTGGAGAAAAAAAGTTCCACCGGGGCTGTGAGACAGGGGTGTACTGTT
AAAACATTCCCTCAATCCCATTATTTGCTTATTTTGACAATTTTTATTTG
TTTATTCAACATACAAAATACTTTTTACATAATATTGTATTGGCCTCTTG
TCGTTAGCTTACAATAAACTTAATATATAGATACCCTGTTAATTATAATT
GTTGATGATTGTTTATTTTGGTGAAGTGAATTGTGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011886-exon-sc0000133-1575043694:509153..509283 | TCONS_00011886-exon-sc0000133-1575043694:509153..509283 | Clytia hemisphaerica | exon |
| TCONS_00011886-exon-sc0000133-1575043694:506125..506169 | TCONS_00011886-exon-sc0000133-1575043694:506125..506169 | Clytia hemisphaerica | exon |
| TCONS_00011886-exon-sc0000133-1575043694:503895..504730 | TCONS_00011886-exon-sc0000133-1575043694:503895..504730 | Clytia hemisphaerica | exon |
| TCONS_00011886-exon-sc0000133-1510915933:509153..509283 | TCONS_00011886-exon-sc0000133-1510915933:509153..509283 | Clytia hemisphaerica | exon |
| TCONS_00011886-exon-sc0000133-1510915933:506125..506169 | TCONS_00011886-exon-sc0000133-1510915933:506125..506169 | Clytia hemisphaerica | exon |
| TCONS_00011886-exon-sc0000133-1510915933:503895..504730 | TCONS_00011886-exon-sc0000133-1510915933:503895..504730 | Clytia hemisphaerica | exon |
| TCONS_00011886-exon-sc0000133-1491911889:509153..509283 | TCONS_00011886-exon-sc0000133-1491911889:509153..509283 | Clytia hemisphaerica | exon |
| TCONS_00011886-exon-sc0000133-1491911889:506125..506169 | TCONS_00011886-exon-sc0000133-1491911889:506125..506169 | Clytia hemisphaerica | exon |
| TCONS_00011886-exon-sc0000133-1491911889:503895..504730 | TCONS_00011886-exon-sc0000133-1491911889:503895..504730 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:503895..509283 - |
Blast
The following BLAST results are available for this feature:
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