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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011889 ID=TCONS_00011889|Name=TCONS_00011889|organism=Clytia hemisphaerica|type=transcript|length=1494bp
CTAATTTCATTTCTTCAACATtcggcgaaattttcgacttaaagtcgtct
tgttttattTATGTTTAACATATATATGTTGATTCGTTTTGTTTGATAAA
CTTGAAAGTAATTTGTCTGACGATAAGGTTTTTTAATTTGGTTCACCAAA
GAAGATTTTCATTCGGCTTTCGGGGGTTTACTTGACTgaatcgttttttc
tttaaTCATGGCTGCAATGAGGCCACCAGGTCCTTTTACAGAGGCAGATG
CTGAACATGTTAAAAAGGATTGTTGGTCAATAAATCGATGTATTGGCTAT
TACAAAGTAGGCGATGGAGTTTGGAACGGCCCACTATACGAACGGAGTAG
GAGTGGTGCTCAACTTAAAGTCGAAAGAGAGACAACAAGTTCTTCCGAAG
ACGATCGTTTACCCTACACCGAAGATGAAAAAGATGACGAATTTCTAACG
AAGACAGCTGCCCATTCAGAAATCTACTTAATGAGAAGAATTTTCCTGAG
ATTAGGAATACCACCAGATAATCATTTACAAATCTGGATTTTGTCACACA
AAGCTGCTTGCCAATACCAACCTGGAACACATATAACATATGATGAAATA
AATTCCTTTGATGTAAAGAAGGATGATAATAATATCTTATTTTATACCCC
TTTAATTGAAAAGAATGGGTATCGTTATAAATATTATTCTTGCCATTGCC
tcttgaaaaagtttttggaGCTCAATTCAGATTTTCCTTTCTCTATTACC
ATCAAATTTTTATACTATAAACAGTACAAACCTGGTGAAGACAAACCTTT
ACAAGACAGACCTCCTACTTTCACGCCAGAAGCCAATAATGGAATAAAGC
AATTGAATTACTACCCGGACCGGGAATTTCCACAATTAAGTGATGAAACA
TCGACCCAGCGACCGGATATGAGTCAGACTGGTGCTACTAAAACAAATGA
CGACGAGACTGCAGAAGTAGGCAATCTATGTGATACGTTCTTACACAAAG
CAACAATAGAATAATATTTAAAGATTGACTACATTGACCAACAGATGATT
AACGTCAAGTAAACGTCAATGAAATTCCAAGATCACGATTAGATTTTTTT
TGTGCACAGACTGTACGCTGTATTGCATTTGTAAATTATAGAATTTGAGT
GTAGTATTTCCTTTTTACCCTGGGTAAAATCTTGTGATATTTTTCACCAT
GTAGGTactttaaaagtatttttttattattttcacgTGATGGCAGGGGG
CAGGGGCTGATTTCTTTTGGGGAGCCAAAGAACAAGGGGTGAATAAACTT
CTGCGCCCCTCTGTAGGCCGTTGCCAGCCCCCTCAAAAAGTTTCACTTGT
GATGTAATTAAATTATtgtaatttataatttttaaagattAATTAAAACA
ATAATTTCTAAGCACTAAGTAATTTCTAAatactttttgttttcaattaa
ctTTTCTTGGTCCTATtgaataccttatcggtagGAAATTCGTC Run BLAST on NCBI protein sequence of TCONS_00011889-protein >TCONS_00011889-protein ID=TCONS_00011889-protein|Name=TCONS_00011889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MAAMRPPGPFTEADAEHVKKDCWSINRCIGYYKVGDGVWNGPLYERSRSG
AQLKVERETTSSSEDDRLPYTEDEKDDEFLTKTAAHSEIYLMRRIFLRLG
IPPDNHLQIWILSHKAACQYQPGTHITYDEINSFDVKKDDNNILFYTPLI
EKNGYRYKYYSCHCLLKKFLELNSDFPFSITIKFLYYKQYKPGEDKPLQD
RPPTFTPEANNGIKQLNYYPDREFPQLSDETSTQRPDMSQTGATKTNDDE
TAEVGNLCDTFLHKATIE Run BLAST on NCBI transcript from alignment at sc0000133:19248..20741 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011889 ID=TCONS_00011889|Name=TCONS_00011889|organism=Clytia hemisphaerica|type=transcript|length=1494bp|location=Sequence derived from alignment at sc0000133:19248..20741 (Clytia hemisphaerica)
GACGAATTTCctaccgataaggtattcaATAGGACCAAGAAAagttaatt
gaaaacaaaaagtatTTAGAAATTACTTAGTGCTTAGAAATTATTGTTTT
AATTaatctttaaaaattataaattacaATAATTTAATTACATCACAAGT
GAAACTTTTTGAGGGGGCTGGCAACGGCCTACAGAGGGGCGCAGAAGTTT
ATTCACCCCTTGTTCTTTGGCTCCCCAAAAGAAATCAGCCCCTGCCCCCT
GCCATCAcgtgaaaataataaaaaaatacttttaaagtACCTACATGGTG
AAAAATATCACAAGATTTTACCCAGGGTAAAAAGGAAATACTACACTCAA
ATTCTATAATTTACAAATGCAATACAGCGTACAGTCTGTGCACAAAAAAA
ATCTAATCGTGATCTTGGAATTTCATTGACGTTTACTTGACGTTAATCAT
CTGTTGGTCAATGTAGTCAATCTTTAAATATTATTCTATTGTTGCTTTGT
GTAAGAACGTATCACATAGATTGCCTACTTCTGCAGTCTCGTCGTCATTT
GTTTTAGTAGCACCAGTCTGACTCATATCCGGTCGCTGGGTCGATGTTTC
ATCACTTAATTGTGGAAATTCCCGGTCCGGGTAGTAATTCAATTGCTTTA
TTCCATTATTGGCTTCTGGCGTGAAAGTAGGAGGTCTGTCTTGTAAAGGT
TTGTCTTCACCAGGTTTGTACTGTTTATAGTATAAAAATTTGATGGTAAT
AGAGAAAGGAAAATCTGAATTGAGCtccaaaaactttttcaagaGGCAAT
GGCAAGAATAATATTTATAACGATACCCATTCTTTTCAATTAAAGGGGTA
TAAAATAAGATATTATTATCATCCTTCTTTACATCAAAGGAATTTATTTC
ATCATATGTTATATGTGTTCCAGGTTGGTATTGGCAAGCAGCTTTGTGTG
ACAAAATCCAGATTTGTAAATGATTATCTGGTGGTATTCCTAATCTCAGG
AAAATTCTTCTCATTAAGTAGATTTCTGAATGGGCAGCTGTCTTCGTTAG
AAATTCGTCATCTTTTTCATCTTCGGTGTAGGGTAAACGATCGTCTTCGG
AAGAACTTGTTGTCTCTCTTTCGACTTTAAGTTGAGCACCACTCCTACTC
CGTTCGTATAGTGGGCCGTTCCAAACTCCATCGCCTACTTTGTAATAGCC
AATACATCGATTTATTGACCAACAATCCTTTTTAACATGTTCAGCATCTG
CCTCTGTAAAAGGACCTGGTGGCCTCATTGCAGCCATGAttaaagaaaaa
acgattcAGTCAAGTAAACCCCCGAAAGCCGAATGAAAATCTTCTTTGGT
GAACCAAATTAAAAAACCTTATCGTCAGACAAATTACTTTCAAGTTTATC
AAACAAAACGAATCAACATATATATGTTAAACATAaataaaacaagacga
ctttaagtcgaaaatttcgccgaATGTTGAAGAAATGAAATTAG Coding sequence (CDS) from alignment at sc0000133:19248..20741 >TCONS_00011889 ID=TCONS_00011889|Name=TCONS_00011889|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at sc0000133:19248..20741 (Clytia hemisphaerica)
TTATTCTATTGTTGCTTTGTGTAAGAACGTATCACATAGATTGCCTACTT
CTGCAGTCTCGTCGTCATTTGTTTTAGTAGCACCAGTCTGACTCATATCC
GGTCGCTGGGTCGATGTTTCATCACTTAATTGTGGAAATTCCCGGTCCGG
GTAGTAATTCAATTGCTTTATTCCATTATTGGCTTCTGGCGTGAAAGTAG
GAGGTCTGTCTTGTAAAGGTTTGTCTTCACCAGGTTTGTACTGTTTATAG
TATAAAAATTTGATGGTAATAGAGAAAGGAAAATCTGAATTGAGCtccaa
aaactttttcaagaGGCAATGGCAAGAATAATATTTATAACGATACCCAT
TCTTTTCAATTAAAGGGGTATAAAATAAGATATTATTATCATCCTTCTTT
ACATCAAAGGAATTTATTTCATCATATGTTATATGTGTTCCAGGTTGGTA
TTGGCAAGCAGCTTTGTGTGACAAAATCCAGATTTGTAAATGATTATCTG
GTGGTATTCCTAATCTCAGGAAAATTCTTCTCATTAAGTAGATTTCTGAA
TGGGCAGCTGTCTTCGTTAGAAATTCGTCATCTTTTTCATCTTCGGTGTA
GGGTAAACGATCGTCTTCGGAAGAACTTGTTGTCTCTCTTTCGACTTTAA
GTTGAGCACCACTCCTACTCCGTTCGTATAGTGGGCCGTTCCAAACTCCA
TCGCCTACTTTGTAATAGCCAATACATCGATTTATTGACCAACAATCCTT
TTTAACATGTTCAGCATCTGCCTCTGTAAAAGGACCTGGTGGCCTCATTG
CAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011889-exon-sc0000133-1491911889:19248..20741 | TCONS_00011889-exon-sc0000133-1491911889:19248..20741 | Clytia hemisphaerica | exon |
| TCONS_00011889-exon-sc0000133-1510915933:19248..20741 | TCONS_00011889-exon-sc0000133-1510915933:19248..20741 | Clytia hemisphaerica | exon |
| TCONS_00011889-exon-sc0000133-1575043694:19248..20741 | TCONS_00011889-exon-sc0000133-1575043694:19248..20741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:19248..20741 . |
Blast
The following BLAST results are available for this feature:
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