MSTRG.1475.6.p1 (mRNA) -

Overview
NameMSTRG.1475.6.p1
Unique NameMSTRG.1475.6.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000007_pilon:619405..621371+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1475.6.p1 ID=MSTRG.1475.6.p1|Name=MSTRG.1475.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1967bp|location=Sequence derived from alignment at sc0000007_pilon:619405..621371+ (Clytia hemisphaerica_ch_hm2_pilon)
ttttgttttgttaacaGAAGTACtaaatagaaaaattatttaaaatgtCA
GCAGCAGAGCCAGAACCCATGGAAACAGCACCAGTTGAAGAGACTACCAA
ACCAGgtactttttaaatattttaaagctATATTATTGCAGTAGGTAGGt
gctaatttttctttaatatgCTCTGTATTCTTTATTTCAGTTAAATTTAT
TGATAAGGAAATGCATAGGACCATAGGTGAAATTAGGTAGAAATCCTTTG
TTTGAAAAGGTTGCTAGTGGATAGGTTAAAGGAGTAGcaataatttgata
ttttatatcTTTAGCTGAAGACAAACCCGCAGAACAACCTGCTGCTGAAG
CAGCTCCAACTGAAACACCTGCAGTTGTTCCTGCTGCAGAAACAGAAACT
CCTGCCGCCCCTGCTGATCCCACCCCAAGTGCTCCAGAGAAACCCGCAGA
AACAGAAACACCTGCCGAAACACCTGCTGCAGCTCCTGCCCCAGAAAAGA
CAGAAAGCCCAGCACCTGCTGCTGTAGAATTACCGAAAGTAACACCACAG
CCAAGCACTCCGGTTGTCCTTACTGAAAATGTTCAGGTAGCAAacgtatt
tttcatttttctcgtttatttttactttcacTTGAAGTGGACTTTCGTGA
AAGAATACcaattttaaaaccaaatttGGTCTGAATTCTTTATGCTACTA
AAACAACTTAGATATAGGCCAGACAACAAAATGAAAACCATACATACACT
GACTGACATCATCCTTGTTaatgttttttagaaaattgtaaGTGAAGAAA
AAGAGGCTGCCACAACCCCAAAGAACAGGACTGACATTCAATCACTACCA
ACGCGCCAATATTTGGACCAATCTGTTGTCCCGATTTTACTACAAGGACT
TACAGCTTTATCAAAAGAGAGGTAGATATTCCGAATTATTCAGTTaaaaa
aaCTGAATCACATTTTGCCATAATTGTTTTCAGAGTATTTCAATGACAAC
AATGCATATTGCCcttcaatttgaaaaacaatttgttTCAGAAAGGATGA
ATTTTGCAAATGATGGCTAGAATTACCCTCTGAGTCTAATAATTTCACTT
ATTTTTAAGCTAAAAAAGTCTTTTAGGAAGTTTCTCTTCCAAATAAGACT
TTTCCTCTATGCCTTCTGCATagcagtttttcaaatttttattttagcta
GTTTCAAAGCATAGCTTTCTTCCCATCCGAAAACACCAAGACTCTGGTGT
GTAAAATTAGTTTTTCGTTTGCAATAAAAACTGATAGactgttaaaaaaa
atcaacttggaaaattttataaaatgtatttttttgcaGACCAAGCGAAC
CAATCGACTTTTTGGCAGCATACCTCATGAAAAACAAACACATGTTCCAA
AAGTGAATCGGACTAACTGGTATGATTATTTAAATACTGCAGTCCTATGA
AAAATCACTCACAATGACTTAAAAAATTGCTTGGTAATGATCGAAAGTTG
CGGTGGCAAAATATGACTATTGAATTTTCTTCGTTCAAAAAAGCACACAC
TCTTTGTGTATAGATTGCAAACATTGTATATATTTAGATGGCTGATTTGC
ATGTGTGTGATATGGATaaccaataaaaacaaaagtaggCGGGAGAGAGG
TATGGTTTGGACATTATATTCGATATAACTTGTGTGTGTGTTTTCAACAA
TTATGATTCTGATGGATAAAAATATAACTTTACTTTCGCTTTGAAGAAGT
GCACAGTTGATTTAAAATTGATGCTTTGATTCTTTTGGTTCAATTTGGTT
GGAGATAATGATATGCAAAACTTTTTAGTTGAtatttattgctttttttt
attttttgttacagTTGCTAGATGAAAAAACCCTAAGAGACCTTATTtag
ttgtaatttttttaactgtTCTGCTACACATTGTTTTTAGAGATATATAA
AAAGAAGCATAAGCAAA

Coding sequence (CDS) from alignment at sc0000007_pilon:619405..621371+

>MSTRG.1475.6.p1 ID=MSTRG.1475.6.p1|Name=MSTRG.1475.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2160bp|location=Sequence derived from alignment at sc0000007_pilon:619405..621371+ (Clytia hemisphaerica_ch_hm2_pilon)
atgtCAGCAGCAGAGCCAGAACCCATGGAAACAGCACCAGTTGAAGAGAC
TACCAAACCAGCTGAAGACAAACCCGCAGAACAACCTGCTGCTGAAGCAG
CTCCAACTGAAACACCTGCAGTTGTTCCTGCTGCAGAAACAGAAACTCCT
GCCGCCCCTGCTGATCCCACCCCAAGTGCTCCAGAGAAACCCGCAGAAAC
AGAAACACCTGCCGAAACACCTGCTGCAGCTCCTGCCCCAGAAAAGACAG
AAAGCCCAGCACCTGCTGCTGTAGAATTACCGAAAGTAACACCACAGCCA
AGCACTCCGGTTGTCCTTACTGAAAATGTTCAGaaaattgtaaGTGAAGA
AAAAGAGGCTGCCACAACCCCAAAGAACAGGACTGACATTCAATCACTAC
CAACGCGCCAATATTTGGACCAATCTGTTGTCCCGATTTTACTACAAGGA
CTTACAGCTTTATCAAAAGAGAGACCAAGCGAACCAATCGACTTTTTGGC
AGCATACCTCATGAAAAACAAACACATGTTCCAAAAGTGAatgtCAGCAG
CAGAGCCAGAACCCATGGAAACAGCACCAGTTGAAGAGACTACCAAACCA
GCTGAAGACAAACCCGCAGAACAACCTGCTGCTGAAGCAGCTCCAACTGA
AACACCTGCAGTTGTTCCTGCTGCAGAAACAGAAACTCCTGCCGCCCCTG
CTGATCCCACCCCAAGTGCTCCAGAGAAACCCGCAGAAACAGAAACACCT
GCCGAAACACCTGCTGCAGCTCCTGCCCCAGAAAAGACAGAAAGCCCAGC
ACCTGCTGCTGTAGAATTACCGAAAGTAACACCACAGCCAAGCACTCCGG
TTGTCCTTACTGAAAATGTTCAGaaaattgtaaGTGAAGAAAAAGAGGCT
GCCACAACCCCAAAGAACAGGACTGACATTCAATCACTACCAACGCGCCA
ATATTTGGACCAATCTGTTGTCCCGATTTTACTACAAGGACTTACAGCTT
TATCAAAAGAGAGACCAAGCGAACCAATCGACTTTTTGGCAGCATACCTC
ATGAAAAACAAACACATGTTCCAAAAGTGAatgtCAGCAGCAGAGCCAGA
ACCCATGGAAACAGCACCAGTTGAAGAGACTACCAAACCAGCTGAAGACA
AACCCGCAGAACAACCTGCTGCTGAAGCAGCTCCAACTGAAACACCTGCA
GTTGTTCCTGCTGCAGAAACAGAAACTCCTGCCGCCCCTGCTGATCCCAC
CCCAAGTGCTCCAGAGAAACCCGCAGAAACAGAAACACCTGCCGAAACAC
CTGCTGCAGCTCCTGCCCCAGAAAAGACAGAAAGCCCAGCACCTGCTGCT
GTAGAATTACCGAAAGTAACACCACAGCCAAGCACTCCGGTTGTCCTTAC
TGAAAATGTTCAGaaaattgtaaGTGAAGAAAAAGAGGCTGCCACAACCC
CAAAGAACAGGACTGACATTCAATCACTACCAACGCGCCAATATTTGGAC
CAATCTGTTGTCCCGATTTTACTACAAGGACTTACAGCTTTATCAAAAGA
GAGACCAAGCGAACCAATCGACTTTTTGGCAGCATACCTCATGAAAAACA
AACACATGTTCCAAAAGTGAatgtCAGCAGCAGAGCCAGAACCCATGGAA
ACAGCACCAGTTGAAGAGACTACCAAACCAGCTGAAGACAAACCCGCAGA
ACAACCTGCTGCTGAAGCAGCTCCAACTGAAACACCTGCAGTTGTTCCTG
CTGCAGAAACAGAAACTCCTGCCGCCCCTGCTGATCCCACCCCAAGTGCT
CCAGAGAAACCCGCAGAAACAGAAACACCTGCCGAAACACCTGCTGCAGC
TCCTGCCCCAGAAAAGACAGAAAGCCCAGCACCTGCTGCTGTAGAATTAC
CGAAAGTAACACCACAGCCAAGCACTCCGGTTGTCCTTACTGAAAATGTT
CAGaaaattgtaaGTGAAGAAAAAGAGGCTGCCACAACCCCAAAGAACAG
GACTGACATTCAATCACTACCAACGCGCCAATATTTGGACCAATCTGTTG
TCCCGATTTTACTACAAGGACTTACAGCTTTATCAAAAGAGAGACCAAGC
GAACCAATCGACTTTTTGGCAGCATACCTCATGAAAAACAAACACATGTT
CCAAAAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1475MSTRG.1475Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1475.6.p1MSTRG.1475.6.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1475.6.p1.exon1MSTRG.1475.6.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1475.6.p1.exon2MSTRG.1475.6.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1475.6.p1.exon3MSTRG.1475.6.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1475.6.p1.exon4MSTRG.1475.6.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007_pilongenomesc0000007_pilon:619405..621371 +