MSTRG.13937.1.p3 (mRNA) -

Overview
NameMSTRG.13937.1.p3
Unique NameMSTRG.13937.1.p3
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000114_pilon:138661..142885+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13937.1.p3 ID=MSTRG.13937.1.p3|Name=MSTRG.13937.1.p3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4225bp|location=Sequence derived from alignment at sc0000114_pilon:138661..142885+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaaaattaaacgaaaaaaaaaatgttccaataaaaaatataaaacgta
GCCGAGATGAGACATAGCTAATTTCCCCACCAAGAGGGGACTGTTATCGG
CTCCAACCGCAGTAAAATAAAACGGTATAACACCCTCCAACGTAGATGTT
AAACTTGGCCTAAGTGAAGCATATGCACAAGGGCAATTCCCTGTTGTACT
GTATTTTAATGGCAAATGGGAATTTCCAATCAAAATCTATACTCAAAATG
AGACACGAAACATAATTGCTGTAGAAGCTTTTCGTCGAAATAGGTTTTAC
TGTGCATGAGTTTGTGATCTTAGTCTTTGTGTGTGTGTCAGAAGaacata
ttttcaagttttcaaagaatgatgGCTGCTCGTATCCGGAATGACGCATG
GAAAGACGATGAGACTTTAAAGTTAAAACTTGAAGAATATATTTTACAAG
GATTGCAGCGTAAGGAAATTATCAGCTATTTGCAAAGGGATTTTGGACAA
TATTCTTGGACTCCTAGAACTTAAAATAGAAGAATGCAGCATTTTGATAT
CGAGAGAAATGATCCAAATGTCTCAATTGAAGAGATTAAAGCAGCTGTAG
AAAACGAAATGAAAGGACCAGGACAACTGTTAGGTTATAGAGCTCTCCAT
TTGAAAATACGACAGGAAtatggattgaaagtaaaacgtGACCTTGTGTA
TGCTGCAATGGTTGATATTGATTACGATTCTGTAAAAAGCCGTCAAccaa
gaaagaaacaaaagaaacagaAACAAGAATTCAAATCATGTGGACCCAAT
TGGTTGTTTTCACTGGATGGTCATGATAAACTCATGGGTTACCAGAATGA
TACCTTCCCCATTGCTATCTATGGGTGCATCGATACAGCTAGCAGAAAGA
TTATGTGGCTCAAAGCCTGGGAATCTAACAGTAAGCCTGAGTTGATTGGA
CGGTGGTATTTCGATTACCTTTATGAAACAAGAACATTGCCGAACAGAAT
TAGGTTGGATAAAGGTACAGAAACCGGAGTCATGGCTACAATGCATTCTT
TTTTGAGAAGTGTACAAGAAGATATGACTGGTAACGATGAAAATAATGCT
TGTGACAAAGTGTTGTTTGGACCTTCTACGTCTAATAAGGTAAAGTAACT
TTTAGGAATTGATCTTGATTTCTTGTATATCCCTAGCAAACTTAATGAAA
AAGGATTTGATTTTCTTAAGGTTTAAATTCTAATTTTGCAAATAATTAAA
ATACAGTAAATGTTCTCATATTTCTAGATCGAGCGATGGTGGAAAGAGCT
ACACGAACGTTTAGAGATGTTTTACAAATCAGGTCTTCGAAATCTTGTAG
ATACTGGGCATTATGATAGAACTAACGATTTGCATAGGTAtttttttagc
tattttcaattttcatgttttgaagATTTATTTATCATTGTAGTAGAAAA
AACATCGTTTCATCATGCAtgtaataattttaaaataaccccaccctttc
actttattttaatATTCAGTCGATTCATACCTATAGTGGCAAAAATCCCA
AAAGTAAAGCCAGATGTTATTATAACTAATCATATGTTTGCATGTTTTTA
GAAAGATGCTCTCATTCGTTATGGTGCCTGTTATTCAACGCGAAATAGAT
ATTTTCAAAGATAAAGTATGGAATGTTCATCGCGTTCGTTCTCAAAAAGA
TGTTGCTCTCCCTGCAGGTGTTCCAAATCACATTTATGATTTCCCAGAAG
AGTACAACTTAGAACCTGATCGTGGTATGTATATATatttaatacaaaaa
tttgatgacaatttgaaaataacatCCGACACCCACATGAAAtgcttttc
aaattatttgaacAATTCGAAAGcgaagtaaaaaaataaatcctGGATTT
CACTATCTGTATTTCCTATGTTCTGCGAACTTATGATTATAATTTACAAT
ACAATTTCCTTTACATTAGGCTTTCAAGTGAATGACGAACAGTTGAGAGA
AGTCGCAGATTATTCAGGGATCCTAGACCATGGAAATGATTTTCTAGACA
ATGATATGCGTGTACAATTTGAGCAGATTATCCCATACCCAGAGAACATA
AAAAATCAGGATTgctttacaaaatatctttatttgaaaaacaatttgta
aattgtaaaaatgtatGCTAACTGTATGATTACATAAAAATATGATATAT
GAAGGATATGTGAAGGATATATGGTTACATGATTTCTAATAAGGAACGTA
TATGATATGactatataaaaacatgttaaaatgactaaaatataagcaat
tataattgattataataaaaaatcattcacTTCTACTAACTGGTGGCAAT
GCAAGTTTTTTGCAATAAATATTACAAATGTGtgtatcaaaaaaatttct
aatcgCCTTCTCTGATAAATTGCCTACACAAAAATTGATATTCCCTTCTT
CGCCTTGATCTTGAAAGAATGACTCTGTGGCTATTTCAGGATCGGTGAGA
TAATACCCCACCCCCTGAATGTCTGTCACGATCAAATTATGGTTCGACTC
TTCCCACGTGTAGTGGACGAAAGCTTCAGCTTTGCTACAAAGATCAAAGT
TGTCACTTTGTGGGTCGACTTGTTTAATGGCCCCATTATTATTgatccat
ttttcaaatttgcctTCAAGAAATGGCTCAATGGTGCAAACACGACCATC
CATTTTTCCAAAGTATATCTTGTGGAAGTAAAGGTTGCCTTCAATTTCTG
GAAATTTTGCCTTGATCTTAGTCCGGTATTGTCCACATAAGTTTCTTGCT
AGTAGGTGCATTTGCACATTTTTTCTTGCATGGTCCTCGTtgctgatttt
aaaatttttgataaccTCCTTGGCCCGTTCGTTGTACATCTTGATCACCC
ACCTTTTTCCAGAAAACACTTTCTCTGCACTCTTTGCTGCATATGCAAGG
CGGAAACCCCCCTCACCAAGTGGTTTCTCGTCAATTTGGAAGTTCACACA
CCCAATACTTGCCCAACTTTTTTCGCTAACGTCAAACTCCTCTACTTCGA
TGGTCTcagtttttgatttctttttaatcaAAGCCCCAAAGTTCATCATT
TCCAATGCAGAAAGGCTTTTTGGGAATGTTGACTCTACAGGTTGCAATTT
CGGCTTTGGTGATTTTGGTTTCATTGATGGAGCTGGTGGAACTGATGCAA
CTGaagtgaaaaatgataaatcCTCATTGTTAGTAGCTGCTGCTTTGCGT
TTTCTCACCACGGCAGAAGGATTAAGAGAAGAAGATGATAACTCGTCATT
TAAAAAGCGGACATAAAAAACGTCAGTTTTTAGCAATTGGTCCATCCGTG
TGGCTGACGGTCCTTTATCACAGACCAAGACATCGCAGGGTCGATTGTCC
TTAAAGTGACGTTTACAAGCCTCTTTAATATTCTCAATTGAGTATTCGGG
ATAATCGTACGGAACAAATTCTCTTGGGCCCTTTGGTTGGTACTTCATGG
TTGTCTGTTTCggctttgttttcattttttgcactGTTATCTCCTTCGGG
GCTACTAAATTGTTGGCGTTTTTAGGTTTAGCTGGCTGTCGTCCACCTGA
AAAGGAATAGATCTTTTGGTAGTAGGCTTTCGATCGTTTAAACAATAAAC
AGATCTTTAGTAAATaaactaaaatattttgcattcaAATTATTTATGTA
ATTTTAGCTACAACTCATAATCAAACTTTtggaaaataaatattgaatac
CTGACTGACGTTTCTTCTTCATTATTAATTCATAATTGTTGTATTTGTCA
CGATTTGCCATATTTGTAATAATTTTAATGATGAAGCCTTATTCTATTCT
AAAACGCGTTGTACTTGAGAACACAGAatcaaagagagaaaaagaaagaa
agagaatcttttaaaaatctaaCACGCGAATTTTGATTCTGCAAGTTTAA
CAATTAAACAATCTTAATCAGTCTTTTGTTTTTTGCCCTTTCTGTTTACT
CTTCGACACGCGCCATCGATATAGGGACTTTCCCACTCGTTATGGCTCAC
CTCGGCCATGATTTTAAGCTTCCTAGAAGGAGAGTGCTTTTACCTTGTGG
ATGTAGATAAAAGGTAATGACTTGCTCTCCATATTTGAGGATATTTTGTC
TTATGTCTCGTCTCGGCTACGTGAaggtttttaaatatttttttcacatt
cgaaaaaaaaaagtcttgaattttt

Coding sequence (CDS) from alignment at sc0000114_pilon:138661..142885+

>MSTRG.13937.1.p3 ID=MSTRG.13937.1.p3|Name=MSTRG.13937.1.p3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000114_pilon:138661..142885+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTTTACAAATCAGGTCTTCGAAATCTTGTAGATACTGGGCATTATGA
TAGAACTAACGATTTGCATAGAAAGATGCTCTCATTCGTTATGGTGCCTG
TTATTCAACGCGAAATAGATATTTTCAAAGATAAAGTATGGAATGTTCAT
CGCGTTCGTTCTCAAAAAGATGTTGCTCTCCCTGCAGGTGTTCCAAATCA
CATTTATGATTTCCCAGAAGAGTACAACTTAGAACCTGATCGTGGCTTTC
AAGTGAATGACGAACAGTTGAGAGAAGTCGCAGATTATTCAGGGATCCTA
GACCATGGAAATGATTTTCTAGACAATGATATGCGTGTACAATTTGAGCA
GATTATCCCATACCCAGAGAACATAAAAAATCAGGATTgctttacaaaat
atctttatttgaaaaacaatttgtaaATGTTTTACAAATCAGGTCTTCGA
AATCTTGTAGATACTGGGCATTATGATAGAACTAACGATTTGCATAGAAA
GATGCTCTCATTCGTTATGGTGCCTGTTATTCAACGCGAAATAGATATTT
TCAAAGATAAAGTATGGAATGTTCATCGCGTTCGTTCTCAAAAAGATGTT
GCTCTCCCTGCAGGTGTTCCAAATCACATTTATGATTTCCCAGAAGAGTA
CAACTTAGAACCTGATCGTGGCTTTCAAGTGAATGACGAACAGTTGAGAG
AAGTCGCAGATTATTCAGGGATCCTAGACCATGGAAATGATTTTCTAGAC
AATGATATGCGTGTACAATTTGAGCAGATTATCCCATACCCAGAGAACAT
AAAAAATCAGGATTgctttacaaaatatctttatttgaaaaacaatttgt
aaATGTTTTACAAATCAGGTCTTCGAAATCTTGTAGATACTGGGCATTAT
GATAGAACTAACGATTTGCATAGAAAGATGCTCTCATTCGTTATGGTGCC
TGTTATTCAACGCGAAATAGATATTTTCAAAGATAAAGTATGGAATGTTC
ATCGCGTTCGTTCTCAAAAAGATGTTGCTCTCCCTGCAGGTGTTCCAAAT
CACATTTATGATTTCCCAGAAGAGTACAACTTAGAACCTGATCGTGGCTT
TCAAGTGAATGACGAACAGTTGAGAGAAGTCGCAGATTATTCAGGGATCC
TAGACCATGGAAATGATTTTCTAGACAATGATATGCGTGTACAATTTGAG
CAGATTATCCCATACCCAGAGAACATAAAAAATCAGGATTgctttacaaa
atatctttatttgaaaaacaatttgtaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13937MSTRG.13937Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13937.1.p3MSTRG.13937.1.p3-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13937.1.p3.exon1MSTRG.13937.1.p3.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13937.1.p3.exon2MSTRG.13937.1.p3.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13937.1.p3.exon3MSTRG.13937.1.p3.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000114_pilongenomesc0000114_pilon:138661..142885 +