MSTRG.13547.1.p1 (mRNA) -

Overview
NameMSTRG.13547.1.p1
Unique NameMSTRG.13547.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000108_pilon:616307..617486+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13547.1.p1 ID=MSTRG.13547.1.p1|Name=MSTRG.13547.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1180bp|location=Sequence derived from alignment at sc0000108_pilon:616307..617486+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTATCAGGCTCACCACGCGCGTTTGTCAAGTACTTGTATAATCCAGACA
GGACACCACATCCCGAACCATTCATCAAAGGCGTGGAAAACTCTTTTGGA
AATCCTAGAATTCGAAAACGGTTTTACCAAAAGTACTACCAGCTACTAAT
GCATGGCCAGTTTCCACATAAAGAAACCAAATTGTGTTTGGTTGGCCCAC
CAGATTCAGGGAAGACCAGTTGGTTCACGCCATTTCAAGGCATCATTCCT
GCCCGATACATTGCCGGGGTGATGAACGACGGCCGTTTCTCTGCTGCCAT
GATCGAAAGCAATACTCAGATCTTCATGATGGACGAGTGGACACCCGATT
CGCTTTCTTGCGAAGATGCCAAACGTGTTTTACAAGGTGAGTAGTGGTTT
TTACACCCATCAATGTACTTGTGGTATTGCTCGAGCGCCTGCTCTTTAGA
AAATTTGGATCAGTTTTATTCACTACTATCTAATTTGCCTTGCTTACCAT
TCAATTTTGGAACTTTGTGTCTTGCTCACTATCTAAATTCTTTCAATTTA
CTTCTTCACGTGTTCAGGTGGAATGAACTTCGTCCCACAGAAGCACAAGA
ACGGATGGAGGATCAATTACAATTCAGGGTTTTTCATCACTACCAACGAG
TATCCAGATTTTGGTAATCAGACCGATTGCGATGCCATCCGTAAACGATT
GGAAGTATTCCAGACATCATCATTGAAAAGAAGAGACACATCAGTCTCAG
GTGAGGGGAACCATTTGATCTGATtatctttttagttttttcttccTAGG
AAACAAATTCGAATTGGCTCCGTGTACACTGCTAACCACttcgaattttt
ctcttttttctcaggCTGGCTGAGAATGAATTGCATGGAAGTCTTCCACT
ATCTTGCCGACTACTTGCGGGACGAACCGATCTTCGACGCTCCAAGTCAC
CTACAGCCAAACGCCGTCCAAACGGGAGCGATTTACAATGACTTCGATTT
CAATCCAATGTCCCTTATGTACAGAGACGAGATGGACAGATTTTGTTTGA
GTCAACCACCCTCTGCAGGCACCAATGCAGCGACCAACGAAAATGTCGAC
GATGAAGACGAAGCAAACAATGACGACAACACAGCATTGGTTCAAGCACT
CGACCATGCAATCATTCAAGCTGACCGTAA

Coding sequence (CDS) from alignment at sc0000108_pilon:616307..617486+

>MSTRG.13547.1.p1 ID=MSTRG.13547.1.p1|Name=MSTRG.13547.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2646bp|location=Sequence derived from alignment at sc0000108_pilon:616307..617486+ (Clytia hemisphaerica_ch_hm2_pilon)
TTATCAGGCTCACCACGCGCGTTTGTCAAGTACTTGTATAATCCAGACAG
GACACCACATCCCGAACCATTCATCAAAGGCGTGGAAAACTCTTTTGGAA
ATCCTAGAATTCGAAAACGGTTTTACCAAAAGTACTACCAGCTACTAATG
CATGGCCAGTTTCCACATAAAGAAACCAAATTGTGTTTGGTTGGCCCACC
AGATTCAGGGAAGACCAGTTGGTTCACGCCATTTCAAGGCATCATTCCTG
CCCGATACATTGCCGGGGTGATGAACGACGGCCGTTTCTCTGCTGCCATG
ATCGAAAGCAATACTCAGATCTTCATGATGGACGAGTGGACACCCGATTC
GCTTTCTTGCGAAGATGCCAAACGTGTTTTACAAGGTGGAATGAACTTCG
TCCCACAGAAGCACAAGAACGGATGGAGGATCAATTACAATTCAGGGTTT
TTCATCACTACCAACGAGTATCCAGATTTTGGTAATCAGACCGATTGCGA
TGCCATCCGTAAACGATTGGAAGTATTCCAGACATCATCATTGAAAAGAA
GAGACACATCAGTCTCAGgCTGGCTGAGAATGAATTGCATGGAAGTCTTC
CACTATCTTGCCGACTACTTGCGGGACGAACCGATCTTCGACGCTCCAAG
TCACCTACAGCCAAACGCCGTCCAAACGGGAGCGATTTACAATGACTTCG
ATTTCAATCCAATGTCCCTTATGTACAGAGACGAGATGGACAGATTTTGT
TTGAGTCAACCACCCTCTGCAGGCACCAATGCAGCGACCAACGAAAATGT
CGACGATGAAGACGAAGCAAACAATGACGACAACACAGCATTGGTTCAAG
CACTCGACCATGCAATCATTCAAGCTGACCGTTTATCAGGCTCACCACGC
GCGTTTGTCAAGTACTTGTATAATCCAGACAGGACACCACATCCCGAACC
ATTCATCAAAGGCGTGGAAAACTCTTTTGGAAATCCTAGAATTCGAAAAC
GGTTTTACCAAAAGTACTACCAGCTACTAATGCATGGCCAGTTTCCACAT
AAAGAAACCAAATTGTGTTTGGTTGGCCCACCAGATTCAGGGAAGACCAG
TTGGTTCACGCCATTTCAAGGCATCATTCCTGCCCGATACATTGCCGGGG
TGATGAACGACGGCCGTTTCTCTGCTGCCATGATCGAAAGCAATACTCAG
ATCTTCATGATGGACGAGTGGACACCCGATTCGCTTTCTTGCGAAGATGC
CAAACGTGTTTTACAAGGTGGAATGAACTTCGTCCCACAGAAGCACAAGA
ACGGATGGAGGATCAATTACAATTCAGGGTTTTTCATCACTACCAACGAG
TATCCAGATTTTGGTAATCAGACCGATTGCGATGCCATCCGTAAACGATT
GGAAGTATTCCAGACATCATCATTGAAAAGAAGAGACACATCAGTCTCAG
gCTGGCTGAGAATGAATTGCATGGAAGTCTTCCACTATCTTGCCGACTAC
TTGCGGGACGAACCGATCTTCGACGCTCCAAGTCACCTACAGCCAAACGC
CGTCCAAACGGGAGCGATTTACAATGACTTCGATTTCAATCCAATGTCCC
TTATGTACAGAGACGAGATGGACAGATTTTGTTTGAGTCAACCACCCTCT
GCAGGCACCAATGCAGCGACCAACGAAAATGTCGACGATGAAGACGAAGC
AAACAATGACGACAACACAGCATTGGTTCAAGCACTCGACCATGCAATCA
TTCAAGCTGACCGTTTATCAGGCTCACCACGCGCGTTTGTCAAGTACTTG
TATAATCCAGACAGGACACCACATCCCGAACCATTCATCAAAGGCGTGGA
AAACTCTTTTGGAAATCCTAGAATTCGAAAACGGTTTTACCAAAAGTACT
ACCAGCTACTAATGCATGGCCAGTTTCCACATAAAGAAACCAAATTGTGT
TTGGTTGGCCCACCAGATTCAGGGAAGACCAGTTGGTTCACGCCATTTCA
AGGCATCATTCCTGCCCGATACATTGCCGGGGTGATGAACGACGGCCGTT
TCTCTGCTGCCATGATCGAAAGCAATACTCAGATCTTCATGATGGACGAG
TGGACACCCGATTCGCTTTCTTGCGAAGATGCCAAACGTGTTTTACAAGG
TGGAATGAACTTCGTCCCACAGAAGCACAAGAACGGATGGAGGATCAATT
ACAATTCAGGGTTTTTCATCACTACCAACGAGTATCCAGATTTTGGTAAT
CAGACCGATTGCGATGCCATCCGTAAACGATTGGAAGTATTCCAGACATC
ATCATTGAAAAGAAGAGACACATCAGTCTCAGgCTGGCTGAGAATGAATT
GCATGGAAGTCTTCCACTATCTTGCCGACTACTTGCGGGACGAACCGATC
TTCGACGCTCCAAGTCACCTACAGCCAAACGCCGTCCAAACGGGAGCGAT
TTACAATGACTTCGATTTCAATCCAATGTCCCTTATGTACAGAGACGAGA
TGGACAGATTTTGTTTGAGTCAACCACCCTCTGCAGGCACCAATGCAGCG
ACCAACGAAAATGTCGACGATGAAGACGAAGCAAACAATGACGACAACAC
AGCATTGGTTCAAGCACTCGACCATGCAATCATTCAAGCTGACCGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13547MSTRG.13547Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13547.1.p1.exon1MSTRG.13547.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13547.1.p1.exon2MSTRG.13547.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13547.1.p1.exon3MSTRG.13547.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13547.1.p1MSTRG.13547.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108_pilongenomesc0000108_pilon:616307..617486 +