MSTRG.14019.1.p1 (mRNA) -

Overview
NameMSTRG.14019.1.p1
Unique NameMSTRG.14019.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000115_pilon:14625..17703+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14019.1.p1 ID=MSTRG.14019.1.p1|Name=MSTRG.14019.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3079bp|location=Sequence derived from alignment at sc0000115_pilon:14625..17703+ (Clytia hemisphaerica_ch_hm2_pilon)
CATAAATAAAAATAGcctgtttggaaaaaaaaattttacctaGATTTTAT
TGATCAGACCATAATGTACtctttttcagccatttttaaagaaaaaagtt
ttttgaaaccTTATATCACAAAGAATCAATGACCCACACTCATCACGACA
CTTCAACTCACTTCATAGAAGGCATCAGTAATGATCTTGTCTTCCTTCTC
ATTGGCCCCACAATCTTTGTCACATTAGTGatcattgttttgaaaatgtt
tcggTCATCCAGAGATATCCATCCAAGACATTTGGAACTGGTTCAAGAAA
TACGGCAACGTGTTTTAGAAGCGAGAGGTGAAACACCTGAACAGCATCCC
TCGCATCGAAATGCTGATGACAGATGCCCTATTTGTATTGATGTGCTGAA
ATTTGCAGTTGAAACTAATTGCGCACATATCttttgttgtaagttttatt
taaatgtcgatatatttttgataattaattttttattcattatattttga
ttttgattctattgttcttctgtgtggattatttaAGCCTCGTACCAATA
GAAGATGATACTATTATGAACTATTTTTAAGAGAATTATTAACATTGTTC
TTCAAGTGACAACCTTTGAtccaaaaatgtttcaaattatattatattat
atttgttCAGGTAGCTGCATAATTTCTTATTGGGAGCATGGATCATCAAT
GTCGGCAATGCAATGTCCTATATGTAGACAAGAGGTAAACTGGCGTCAAC
TATGTTTAGTCTCAGGCCCGGCGGAATAACCGTGAAAGCAGGGCGACTgg
tcaaaatgagatgaaatttgctagaaatttgagaaagaaatctcatttgc
tcaaaagtggagaggctgaagtctccTCAGTCTCCCCGATTCAGCTGGGC
CTGAGTCACAGCTGCACTATTTTCAAGGATTTTCAGTATATACTGGGGGA
GGGgatattaaaaatttaaattgagaATGAGAATTACCATATATTTCCAA
CCACTTATTGATTGCTCCATCGAGCCTATCAAAAAGTGGACCTGGGGCTA
GGATTTAGGAAGAAGGCTAGTGCAATCATATGGTCAAGATccattgagaa
tttagcttatttcctcgttttttgaaatttggagttcgggcgagaaagtc
acttttgggctaattgataaatttattcgagtatttcaattcgggagggg
ttcatagacttccaggctatattcagAGCCCTATTGGaacattcttgaac
ttttggatccttagatcctaagctcctatgcctaatttagagcgcttctg
AATcatttgtggttataagatctcctagggatttcccttttttctcaaat
attacgaccgtgattgtaaatagaaattgaaagtttttataATGACGTTT
TACTGCCATATTCAACAGGTTCGAGTGTTGCTTCCAGATTTCACCCATGA
AGAAGAAATATCAGACAACGTCAATGAGCAAACCAATAAAATCAGATTGT
ATAATCGAAGGTTCTCTGGAGAACCAAGACCGGTAAGTGGGAGAAAATAT
AAAAGGAAGTTTATctataatgggcttttccagaaaaaatttgaatatgg
ggggtggaggatataacattttttagaaatttacccctccccctcccgga
cattgtgaattttgacccccctGGACAGTAGGTCTGACcgcctggacaag
catcagttgacccccgtgaacattcaaaataaccctcaaaccgagcaaaa
ttacccccaaacagagcaagtttaccccctggacagggcatactttttag
atttttcactaccccccccccggacactatTTCCTCCACCCCTCCATGTt
aggacattttctggaagagcccaatcgtGCACTCCACACTCTGAGTGTTA
CAAGTCTCAttgaagtatataaagaggcttttTCGTCTCAAGATTCTGCA
TAACAAACAGACACAATAAACAGTCACTTTGATTGAATTCCTCAATGATT
TCCCAAGTCTTTGAGAATTGAAGATATAAGAGGAAGTTTGTATATCGTAC
AGTGGGTACTTTGAGATCCGAGTTTGAAATAAAAGTTCTCCCGTCTCAGA
CGAAATTTCGTCTCAGAGAAGTATACAAAGAGGAtttttttcgtctcaaa
attctgcaatTTTATTTTCCATATGATTAGAATTTTATACATACATCGTT
TCAtgagtttttgacttttctttgaattttggatTGGATTAAACAAAGCT
CAATAAAATTTGTTGAATTGTGTTTAGAaactaattttcactttcatatT
TTAGCTACTGGAATATATATTGGATTTCCCTGTTCTCCTTCGCCACATGT
TCCGTAATTTCTTTAACGTTAACGGGCTTGTTGCAATGTTACGAGTCCGA
ATTGTCGTGTATCTAGCCATCGTTGTGTTATATATTCTCTCACCGTTGGA
CATCATACCAGAATTTGTGTTCGGTATTTTAGGTTTTCTAGATGATGTTG
CCATTGCTGGAATTATATTGTTATACTTGACTGTTCTTTTTCGACAAAGT
TTAGcgaatcattaaaattttagaaaatattttaatattattgTATGATT
AGTAGTGGGGTGGCTCTTAGATTAGAATCCGTGGCACCCACTTCACTTCC
CTTCATACTTTTTATGGTCAACAGGGCGACGTTTCAGGCAAAACTTCTAA
TCCCTAAATAGATAATGGCTATTTTAAGTCGGAAATTCTATTTGCCACGG
ATCCTAAGGACCCTAACAAAATGAAGTAGTCCTCCATATAATCTTTAGCG
TTCTAACTATTTATTACATTACCCATATATCATATATACTTCAGTTTTAA
TAAGACCTGAAGATAGGATATCGATAAAGAAGCTTTACTTTGATTTGCAT
CTTCTACTTTACCTTTTGATCCAAATGCTCCGATACATACAATACACcgt
ttcgaccgtagccgccaattgccgcgcgggcatttttttgtccgttttac
caccctaaaaccctCCCAGTCTTCtttttttCGCTCCTATATACAGTaaa
aaaaGTTGTCAagaaaggattggatcgag

Coding sequence (CDS) from alignment at sc0000115_pilon:14625..17703+

>MSTRG.14019.1.p1 ID=MSTRG.14019.1.p1|Name=MSTRG.14019.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3036bp|location=Sequence derived from alignment at sc0000115_pilon:14625..17703+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACCCACACTCATCACGACACTTCAACTCACTTCATAGAAGGCATCAG
TAATGATCTTGTCTTCCTTCTCATTGGCCCCACAATCTTTGTCACATTAG
TGatcattgttttgaaaatgtttcggTCATCCAGAGATATCCATCCAAGA
CATTTGGAACTGGTTCAAGAAATACGGCAACGTGTTTTAGAAGCGAGAGG
TGAAACACCTGAACAGCATCCCTCGCATCGAAATGCTGATGACAGATGCC
CTATTTGTATTGATGTGCTGAAATTTGCAGTTGAAACTAATTGCGCACAT
ATCttttgttGTAGCTGCATAATTTCTTATTGGGAGCATGGATCATCAAT
GTCGGCAATGCAATGTCCTATATGTAGACAAGAGGTTCGAGTGTTGCTTC
CAGATTTCACCCATGAAGAAGAAATATCAGACAACGTCAATGAGCAAACC
AATAAAATCAGATTGTATAATCGAAGGTTCTCTGGAGAACCAAGACCGCT
ACTGGAATATATATTGGATTTCCCTGTTCTCCTTCGCCACATGTTCCGTA
ATTTCTTTAACGTTAACGGGCTTGTTGCAATGTTACGAGTCCGAATTGTC
GTGTATCTAGCCATCGTTGTGTTATATATTCTCTCACCGTTGGACATCAT
ACCAGAATTTGTGTTCGGTATTTTAGGTTTTCTAGATGATGTTGCCATTG
CTGGAATTATATTGTTATACTTGACTGTTCTTTTTCGACAAAGTTTAGcg
aatcattaaATGACCCACACTCATCACGACACTTCAACTCACTTCATAGA
AGGCATCAGTAATGATCTTGTCTTCCTTCTCATTGGCCCCACAATCTTTG
TCACATTAGTGatcattgttttgaaaatgtttcggTCATCCAGAGATATC
CATCCAAGACATTTGGAACTGGTTCAAGAAATACGGCAACGTGTTTTAGA
AGCGAGAGGTGAAACACCTGAACAGCATCCCTCGCATCGAAATGCTGATG
ACAGATGCCCTATTTGTATTGATGTGCTGAAATTTGCAGTTGAAACTAAT
TGCGCACATATCttttgttGTAGCTGCATAATTTCTTATTGGGAGCATGG
ATCATCAATGTCGGCAATGCAATGTCCTATATGTAGACAAGAGGTTCGAG
TGTTGCTTCCAGATTTCACCCATGAAGAAGAAATATCAGACAACGTCAAT
GAGCAAACCAATAAAATCAGATTGTATAATCGAAGGTTCTCTGGAGAACC
AAGACCGCTACTGGAATATATATTGGATTTCCCTGTTCTCCTTCGCCACA
TGTTCCGTAATTTCTTTAACGTTAACGGGCTTGTTGCAATGTTACGAGTC
CGAATTGTCGTGTATCTAGCCATCGTTGTGTTATATATTCTCTCACCGTT
GGACATCATACCAGAATTTGTGTTCGGTATTTTAGGTTTTCTAGATGATG
TTGCCATTGCTGGAATTATATTGTTATACTTGACTGTTCTTTTTCGACAA
AGTTTAGcgaatcattaaATGACCCACACTCATCACGACACTTCAACTCA
CTTCATAGAAGGCATCAGTAATGATCTTGTCTTCCTTCTCATTGGCCCCA
CAATCTTTGTCACATTAGTGatcattgttttgaaaatgtttcggTCATCC
AGAGATATCCATCCAAGACATTTGGAACTGGTTCAAGAAATACGGCAACG
TGTTTTAGAAGCGAGAGGTGAAACACCTGAACAGCATCCCTCGCATCGAA
ATGCTGATGACAGATGCCCTATTTGTATTGATGTGCTGAAATTTGCAGTT
GAAACTAATTGCGCACATATCttttgttGTAGCTGCATAATTTCTTATTG
GGAGCATGGATCATCAATGTCGGCAATGCAATGTCCTATATGTAGACAAG
AGGTTCGAGTGTTGCTTCCAGATTTCACCCATGAAGAAGAAATATCAGAC
AACGTCAATGAGCAAACCAATAAAATCAGATTGTATAATCGAAGGTTCTC
TGGAGAACCAAGACCGCTACTGGAATATATATTGGATTTCCCTGTTCTCC
TTCGCCACATGTTCCGTAATTTCTTTAACGTTAACGGGCTTGTTGCAATG
TTACGAGTCCGAATTGTCGTGTATCTAGCCATCGTTGTGTTATATATTCT
CTCACCGTTGGACATCATACCAGAATTTGTGTTCGGTATTTTAGGTTTTC
TAGATGATGTTGCCATTGCTGGAATTATATTGTTATACTTGACTGTTCTT
TTTCGACAAAGTTTAGcgaatcattaaATGACCCACACTCATCACGACAC
TTCAACTCACTTCATAGAAGGCATCAGTAATGATCTTGTCTTCCTTCTCA
TTGGCCCCACAATCTTTGTCACATTAGTGatcattgttttgaaaatgttt
cggTCATCCAGAGATATCCATCCAAGACATTTGGAACTGGTTCAAGAAAT
ACGGCAACGTGTTTTAGAAGCGAGAGGTGAAACACCTGAACAGCATCCCT
CGCATCGAAATGCTGATGACAGATGCCCTATTTGTATTGATGTGCTGAAA
TTTGCAGTTGAAACTAATTGCGCACATATCttttgttGTAGCTGCATAAT
TTCTTATTGGGAGCATGGATCATCAATGTCGGCAATGCAATGTCCTATAT
GTAGACAAGAGGTTCGAGTGTTGCTTCCAGATTTCACCCATGAAGAAGAA
ATATCAGACAACGTCAATGAGCAAACCAATAAAATCAGATTGTATAATCG
AAGGTTCTCTGGAGAACCAAGACCGCTACTGGAATATATATTGGATTTCC
CTGTTCTCCTTCGCCACATGTTCCGTAATTTCTTTAACGTTAACGGGCTT
GTTGCAATGTTACGAGTCCGAATTGTCGTGTATCTAGCCATCGTTGTGTT
ATATATTCTCTCACCGTTGGACATCATACCAGAATTTGTGTTCGGTATTT
TAGGTTTTCTAGATGATGTTGCCATTGCTGGAATTATATTGTTATACTTG
ACTGTTCTTTTTCGACAAAGTTTAGcgaatcattaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14019MSTRG.14019Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14019.1.p1MSTRG.14019.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14019.1.p1.exon1MSTRG.14019.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14019.1.p1.exon2MSTRG.14019.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14019.1.p1.exon3MSTRG.14019.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14019.1.p1.exon4MSTRG.14019.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000115_pilongenomesc0000115_pilon:14625..17703 +