MSTRG.17739.1.p1 (mRNA) -

Overview
NameMSTRG.17739.1.p1
Unique NameMSTRG.17739.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000182_pilon:480100..483408+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17739.1.p1 ID=MSTRG.17739.1.p1|Name=MSTRG.17739.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3309bp|location=Sequence derived from alignment at sc0000182_pilon:480100..483408+ (Clytia hemisphaerica_ch_hm2_pilon)
ACTACATTCCGTTTTTACATTACCAAGATCTGGCGCGCCACACTTCACCT
TGGCTACTTCATCTCCACATCACTTTAAAAAAGATTCCAACAATCACTCA
TCAAACTTAAATATTTAACAGGTCATACAACACCTTCAGCAAAATGGATT
CTGTAAGTAATTCAAACATAAAGAATACCCTCTGTGAAACAATAAGATGT
CTTCATCTGGCACCTTAATGGAACTAATTCTCGGGGGGAATTTCCGCGTT
TGAGACCCACTTTTTGCCGAAATTCTTACATATTCCTAGGAGTTTATGAG
GATTTTTAGGTAATAATTGTATTTCGCggaaattagttcccttaaggagG
TAAAAGTCTTTCGAAAACATTTCGAAAGTAGCCCtttttttCACCCTTCT
TTGAttagatttctaaaaaaatattgttaacgAACTCTCTCTCTGTCATG
AAGTTTGAACCACCTTATATCAGAATATCAATCATATCAATGACAACTAC
AAATATAATGTTCCAGGTAGTCCACTTtaggctttttgatagactggata
gCGCGATTAAGCGAACTTTAATGAACTTAGTGTCATCAAGacttatcaaa
aagcaaagcaCAGCAAAACGTAGACTTTAGCCAAGGTCTTATGTTATCAT
TCTTTCCACCCATAGATTCTCCAcataaaacaacaaaacacaacCGACCC
CCAACAAGGGGGGAGTGAGAGATTACTCGATGATCCCGCTCCGACACTAT
TACCGACATCACCGACACCGGTGAATAATACCGACGTCGTTGACATCAAC
AATAACGAGTAAGAAGTGTATTTCATATTTCCTCTAAGCCAATTCTTGAT
TATGCCGGTTTTTCGTGAGCCCTGCTAGAGTATTCAAAAATTTAGCATTG
TTTAGTATTGCATTCTATTTTATTGATTTGACTTTTCTAATTCTGTACAA
AATTCCTATGCAAGGGCTCTGTTGTGGGAGATCGGTTAAGAATTTGCGTG
CTAAATAAATAACATTGTCTAGAAAATAAGTCCACTCTACTGAGCAGCAA
CGATCAAAAGTTTCTCTTTATCTCCCCGTTCTTTGTGTAAAAGAATATAT
AATATCTTACGCAGTCAATCATTCAAAAATCTAAAGCAAAATAGTTTAAC
CTAGTGAACTCTTTGAGGTACTAATTCCAACATTAATGCTTAAACTCCTA
TCTTTATTTCTATATCATCCAGGCCATCAACTCCAAACACAACGCCCACA
CCGCCTCAAAAACCATCCACCTTCAAGGACAATATCTTGATCCTTACCAC
AACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCAAAAACAAACCA
ACTTAAAAGACAATATCTTTGCCCTTGCCACAACCATCTACGCAGCCATT
TTAGGCTTTCTAGGTGGCCTGCTCACCAAATGgacaaaattaaaacaaaa
aattcattctttTAACATCAACCTTGTTTACTATCTGTGCGGGTTTTTAG
CATTTAGCATAGTAATTTGTTTGTGCTATGCTGAGTTGGACGATGATATC
GTTCGGTAAGTGTCTCGTTTATATCTTCCAAGCAGAAAGTTTTCCGTGCA
TTAATCACTGTTAACGTACTTACTGTATAGACAGTGCAGTGTaaagtgga
aaaacaaagttttttagacaaaaatcttcaagaaaaacaagaaaaacacc
ttacaaaTCAATTATTAAAGTTGCTTAAATCAAAGGGTTgaatttgaaat
gatttttcttCCACTATTTATCAATTTTCTACAAACATTTTGGAGGATGA
TAATACCAGgatcttttaaatatttttcattggtTATATATTATCTTTCT
TTCAGTTCCGAGACTACACACTTCGGTGATCGCCCTCTAACCGAACCTGA
AGTTACCGAGAACAAAGTCATCAACCTCACTTTACCAATGGTAATCTCAA
CAGTGGTAGCTTGTCTAGTTGGATCATTTGTGATATCAACCCAGAAGCTC
AATCTTATCAAGATTTCAAAACCGAAATCGTTCAGCCGTATTATCATTGC
ATTTACATGCTTCTTATTGGTATCTTTGACCACATTTTGCTGGTACATGG
AAATCATTAAAAACCCCTTAAGGTAATATTGTTTTTCTAATTccatattt
tattcaaaatatcatcaatTCAAAATTGGTTTTAGTCGGAACATTAGTTT
AATTACTTTAAGGGAACTTATCATGACTAattcttgccaaaattaaaaaa
tatattgccACATTGCCAAGATAAGTAAGCATATACTAGATGTCACCCGC
GTCTTTTAATtgttagtgaggtgctcgctacaaaatattatttttcatga
tttactTTACTAAGACCTGAGTTTTGCGTAAAACACTTATTTTTATAGGC
AAAAGAGAATATTATTTCCTCTACCAATTTTAAAGATTGCtgtctcgcca
aaataagttccccgccaatttttttttttaggatttttgctacccgccaa
atttaaataatCAGCTTTCTCTCtattaaatattttcagtttcgaTTGGC
TTGTTGATTCATTCAGCCCTCATGAATCACCATCCGAGTCATCAAGTTAT
TTCGACCTTGAATGGGtttctaattattttcaaaaagaagagGCTACGTA
CAAATCTTCTGGGTAAATATAAACATATTCTACACTCCACTTTGAAACAG
AGCCGGTAGGATTCCTtattaccttatcgggaaaaattttcgtcggggaa
aaatattcgtcacttggccaaatttcgtcacttttccccgacgaagtttt
ccccgataaggtatattatGGAAAACCGTCCTAATAATTGTCTACGATGA
GAAAACTCACTGTGCTGCAATTTTATCCCCGCAAAAAATGAACTAAATTT
TCCATACGTTTCTTACATTGGACATCTAGACTGGTCACTGGAACAATGGT
CAAATCAATGTTTTGCAAATTCTGCAAAGAATGATTTGTCGCTTTCATCA
GCGATTATTAAAAATTAGATTGAAATGGGTAAAAAGCACCTCAACCCTTC
AAGTTTTCAGCTGCCTAACCAAAGACCACCCCctcttttaataattttgt
aaCTCTTTTTATAGATCGCCAGATATTAGGCATCTGAGAGTAAAAGTACT
TTTACAATAGTTTAATTCACAATTCAATTTTCTTATTAGATGGAGCCTGT
TCTCATCTCTGTTCGAGCAGCCACCACCTAAAACTTACATCGAGACGATA
ATCGAATACTTCACCAACGACCTTCCACAAGCGTCATTATGGTAAatggt
ttacaaaaa

Coding sequence (CDS) from alignment at sc0000182_pilon:480100..483408+

>MSTRG.17739.1.p1 ID=MSTRG.17739.1.p1|Name=MSTRG.17739.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5886bp|location=Sequence derived from alignment at sc0000182_pilon:480100..483408+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATTCTATTCTCCAcataaaacaacaaaacacaacCGACCCCCAACA
AGGGGGGAGTGAGAGATTACTCGATGATCCCGCTCCGACACTATTACCGA
CATCACCGACACCGGTGAATAATACCGACGTCGTTGACATCAACAATAAC
GAGCCATCAACTCCAAACACAACGCCCACACCGCCTCAAAAACCATCCAC
CTTCAAGGACAATATCTTGATCCTTACCACAACCATCTACGCAGCCATTT
TAGGCTTTCTAGGTGGCCAAAAACAAACCAACTTAAAAGACAATATCTTT
GCCCTTGCCACAACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCT
GCTCACCAAATGgacaaaattaaaacaaaaaattcattctttTAACATCA
ACCTTGTTTACTATCTGTGCGGGTTTTTAGCATTTAGCATAGTAATTTGT
TTGTGCTATGCTGAGTTGGACGATGATATCGTTCGTTCCGAGACTACACA
CTTCGGTGATCGCCCTCTAACCGAACCTGAAGTTACCGAGAACAAAGTCA
TCAACCTCACTTTACCAATGGTAATCTCAACAGTGGTAGCTTGTCTAGTT
GGATCATTTGTGATATCAACCCAGAAGCTCAATCTTATCAAGATTTCAAA
ACCGAAATCGTTCAGCCGTATTATCATTGCATTTACATGCTTCTTATTGG
TATCTTTGACCACATTTTGCTGGTACATGGAAATCATTAAAAACCCCTTA
AGtttcgaTTGGCTTGTTGATTCATTCAGCCCTCATGAATCACCATCCGA
GTCATCAAGTTATTTCGACCTTGAATGGGtttctaattattttcaaaaag
aagagGCTACGTACAAATCTTCTGGATGGAGCCTGTTCTCATCTCTGTTC
GAGCAGCCACCACCTAAAACTTACATCGAGACGATAATCGAATACTTCAC
CAACGACCTTCCACAAGCGTCATTATGGTAAATGGATTCTATTCTCCAca
taaaacaacaaaacacaacCGACCCCCAACAAGGGGGGAGTGAGAGATTA
CTCGATGATCCCGCTCCGACACTATTACCGACATCACCGACACCGGTGAA
TAATACCGACGTCGTTGACATCAACAATAACGAGCCATCAACTCCAAACA
CAACGCCCACACCGCCTCAAAAACCATCCACCTTCAAGGACAATATCTTG
ATCCTTACCACAACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCA
AAAACAAACCAACTTAAAAGACAATATCTTTGCCCTTGCCACAACCATCT
ACGCAGCCATTTTAGGCTTTCTAGGTGGCCTGCTCACCAAATGgacaaaa
ttaaaacaaaaaattcattctttTAACATCAACCTTGTTTACTATCTGTG
CGGGTTTTTAGCATTTAGCATAGTAATTTGTTTGTGCTATGCTGAGTTGG
ACGATGATATCGTTCGTTCCGAGACTACACACTTCGGTGATCGCCCTCTA
ACCGAACCTGAAGTTACCGAGAACAAAGTCATCAACCTCACTTTACCAAT
GGTAATCTCAACAGTGGTAGCTTGTCTAGTTGGATCATTTGTGATATCAA
CCCAGAAGCTCAATCTTATCAAGATTTCAAAACCGAAATCGTTCAGCCGT
ATTATCATTGCATTTACATGCTTCTTATTGGTATCTTTGACCACATTTTG
CTGGTACATGGAAATCATTAAAAACCCCTTAAGtttcgaTTGGCTTGTTG
ATTCATTCAGCCCTCATGAATCACCATCCGAGTCATCAAGTTATTTCGAC
CTTGAATGGGtttctaattattttcaaaaagaagagGCTACGTACAAATC
TTCTGGATGGAGCCTGTTCTCATCTCTGTTCGAGCAGCCACCACCTAAAA
CTTACATCGAGACGATAATCGAATACTTCACCAACGACCTTCCACAAGCG
TCATTATGGTAAATGGATTCTATTCTCCAcataaaacaacaaaacacaac
CGACCCCCAACAAGGGGGGAGTGAGAGATTACTCGATGATCCCGCTCCGA
CACTATTACCGACATCACCGACACCGGTGAATAATACCGACGTCGTTGAC
ATCAACAATAACGAGCCATCAACTCCAAACACAACGCCCACACCGCCTCA
AAAACCATCCACCTTCAAGGACAATATCTTGATCCTTACCACAACCATCT
ACGCAGCCATTTTAGGCTTTCTAGGTGGCCAAAAACAAACCAACTTAAAA
GACAATATCTTTGCCCTTGCCACAACCATCTACGCAGCCATTTTAGGCTT
TCTAGGTGGCCTGCTCACCAAATGgacaaaattaaaacaaaaaattcatt
ctttTAACATCAACCTTGTTTACTATCTGTGCGGGTTTTTAGCATTTAGC
ATAGTAATTTGTTTGTGCTATGCTGAGTTGGACGATGATATCGTTCGTTC
CGAGACTACACACTTCGGTGATCGCCCTCTAACCGAACCTGAAGTTACCG
AGAACAAAGTCATCAACCTCACTTTACCAATGGTAATCTCAACAGTGGTA
GCTTGTCTAGTTGGATCATTTGTGATATCAACCCAGAAGCTCAATCTTAT
CAAGATTTCAAAACCGAAATCGTTCAGCCGTATTATCATTGCATTTACAT
GCTTCTTATTGGTATCTTTGACCACATTTTGCTGGTACATGGAAATCATT
AAAAACCCCTTAAGtttcgaTTGGCTTGTTGATTCATTCAGCCCTCATGA
ATCACCATCCGAGTCATCAAGTTATTTCGACCTTGAATGGGtttctaatt
attttcaaaaagaagagGCTACGTACAAATCTTCTGGATGGAGCCTGTTC
TCATCTCTGTTCGAGCAGCCACCACCTAAAACTTACATCGAGACGATAAT
CGAATACTTCACCAACGACCTTCCACAAGCGTCATTATGGTAAATGGATT
CTATTCTCCAcataaaacaacaaaacacaacCGACCCCCAACAAGGGGGG
AGTGAGAGATTACTCGATGATCCCGCTCCGACACTATTACCGACATCACC
GACACCGGTGAATAATACCGACGTCGTTGACATCAACAATAACGAGCCAT
CAACTCCAAACACAACGCCCACACCGCCTCAAAAACCATCCACCTTCAAG
GACAATATCTTGATCCTTACCACAACCATCTACGCAGCCATTTTAGGCTT
TCTAGGTGGCCAAAAACAAACCAACTTAAAAGACAATATCTTTGCCCTTG
CCACAACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCTGCTCACC
AAATGgacaaaattaaaacaaaaaattcattctttTAACATCAACCTTGT
TTACTATCTGTGCGGGTTTTTAGCATTTAGCATAGTAATTTGTTTGTGCT
ATGCTGAGTTGGACGATGATATCGTTCGTTCCGAGACTACACACTTCGGT
GATCGCCCTCTAACCGAACCTGAAGTTACCGAGAACAAAGTCATCAACCT
CACTTTACCAATGGTAATCTCAACAGTGGTAGCTTGTCTAGTTGGATCAT
TTGTGATATCAACCCAGAAGCTCAATCTTATCAAGATTTCAAAACCGAAA
TCGTTCAGCCGTATTATCATTGCATTTACATGCTTCTTATTGGTATCTTT
GACCACATTTTGCTGGTACATGGAAATCATTAAAAACCCCTTAAGtttcg
aTTGGCTTGTTGATTCATTCAGCCCTCATGAATCACCATCCGAGTCATCA
AGTTATTTCGACCTTGAATGGGtttctaattattttcaaaaagaagagGC
TACGTACAAATCTTCTGGATGGAGCCTGTTCTCATCTCTGTTCGAGCAGC
CACCACCTAAAACTTACATCGAGACGATAATCGAATACTTCACCAACGAC
CTTCCACAAGCGTCATTATGGTAAATGGATTCTATTCTCCAcataaaaca
acaaaacacaacCGACCCCCAACAAGGGGGGAGTGAGAGATTACTCGATG
ATCCCGCTCCGACACTATTACCGACATCACCGACACCGGTGAATAATACC
GACGTCGTTGACATCAACAATAACGAGCCATCAACTCCAAACACAACGCC
CACACCGCCTCAAAAACCATCCACCTTCAAGGACAATATCTTGATCCTTA
CCACAACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCAAAAACAA
ACCAACTTAAAAGACAATATCTTTGCCCTTGCCACAACCATCTACGCAGC
CATTTTAGGCTTTCTAGGTGGCCTGCTCACCAAATGgacaaaattaaaac
aaaaaattcattctttTAACATCAACCTTGTTTACTATCTGTGCGGGTTT
TTAGCATTTAGCATAGTAATTTGTTTGTGCTATGCTGAGTTGGACGATGA
TATCGTTCGTTCCGAGACTACACACTTCGGTGATCGCCCTCTAACCGAAC
CTGAAGTTACCGAGAACAAAGTCATCAACCTCACTTTACCAATGGTAATC
TCAACAGTGGTAGCTTGTCTAGTTGGATCATTTGTGATATCAACCCAGAA
GCTCAATCTTATCAAGATTTCAAAACCGAAATCGTTCAGCCGTATTATCA
TTGCATTTACATGCTTCTTATTGGTATCTTTGACCACATTTTGCTGGTAC
ATGGAAATCATTAAAAACCCCTTAAGtttcgaTTGGCTTGTTGATTCATT
CAGCCCTCATGAATCACCATCCGAGTCATCAAGTTATTTCGACCTTGAAT
GGGtttctaattattttcaaaaagaagagGCTACGTACAAATCTTCTGGA
TGGAGCCTGTTCTCATCTCTGTTCGAGCAGCCACCACCTAAAACTTACAT
CGAGACGATAATCGAATACTTCACCAACGACCTTCCACAAGCGTCATTAT
GGTAAATGGATTCTATTCTCCAcataaaacaacaaaacacaacCGACCCC
CAACAAGGGGGGAGTGAGAGATTACTCGATGATCCCGCTCCGACACTATT
ACCGACATCACCGACACCGGTGAATAATACCGACGTCGTTGACATCAACA
ATAACGAGCCATCAACTCCAAACACAACGCCCACACCGCCTCAAAAACCA
TCCACCTTCAAGGACAATATCTTGATCCTTACCACAACCATCTACGCAGC
CATTTTAGGCTTTCTAGGTGGCCAAAAACAAACCAACTTAAAAGACAATA
TCTTTGCCCTTGCCACAACCATCTACGCAGCCATTTTAGGCTTTCTAGGT
GGCCTGCTCACCAAATGgacaaaattaaaacaaaaaattcattctttTAA
CATCAACCTTGTTTACTATCTGTGCGGGTTTTTAGCATTTAGCATAGTAA
TTTGTTTGTGCTATGCTGAGTTGGACGATGATATCGTTCGTTCCGAGACT
ACACACTTCGGTGATCGCCCTCTAACCGAACCTGAAGTTACCGAGAACAA
AGTCATCAACCTCACTTTACCAATGGTAATCTCAACAGTGGTAGCTTGTC
TAGTTGGATCATTTGTGATATCAACCCAGAAGCTCAATCTTATCAAGATT
TCAAAACCGAAATCGTTCAGCCGTATTATCATTGCATTTACATGCTTCTT
ATTGGTATCTTTGACCACATTTTGCTGGTACATGGAAATCATTAAAAACC
CCTTAAGtttcgaTTGGCTTGTTGATTCATTCAGCCCTCATGAATCACCA
TCCGAGTCATCAAGTTATTTCGACCTTGAATGGGtttctaattattttca
aaaagaagagGCTACGTACAAATCTTCTGGATGGAGCCTGTTCTCATCTC
TGTTCGAGCAGCCACCACCTAAAACTTACATCGAGACGATAATCGAATAC
TTCACCAACGACCTTCCACAAGCGTCATTATGGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17739MSTRG.17739Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17739.1.p1MSTRG.17739.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17739.1.p1.exon1MSTRG.17739.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17739.1.p1.exon2MSTRG.17739.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17739.1.p1.exon3MSTRG.17739.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17739.1.p1.exon4MSTRG.17739.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17739.1.p1.exon5MSTRG.17739.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17739.1.p1.exon6MSTRG.17739.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000182_pilongenomesc0000182_pilon:480100..483408 +