MSTRG.19658.1.p1 (mRNA) -

Overview
NameMSTRG.19658.1.p1
Unique NameMSTRG.19658.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000228_pilon:81499..85882-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19658.1.p1 ID=MSTRG.19658.1.p1|Name=MSTRG.19658.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4384bp|location=Sequence derived from alignment at sc0000228_pilon:81499..85882- (Clytia hemisphaerica_ch_hm2_pilon)
GAATCACCGCGTATAATCCAATATCGATATCGTTTATCTATAGCGCGGTG
TTTGAATACAAAAGCCATACAAGGCCAAGCGGAGGAGGTCAGGAACTATA
TAAATCTGAATTTTTACTTTCAAATCATAATCATTCATCAGATCATTCGT
TTATCGATACATTGTACTTAAAATAGGGATCACTCTGTCAAATCACCGCA
AGCTAAGCTCATCAGGCGATTTGATATTATACAGTAGAGAAAAGAAAAAA
TTTGATATATTCATTCAAAGCGATTAGAGAACTCAAAAAAAGATTTTTGC
TTTGAATTTTTGGTGAAATTTTGAGAATGCTTAGTTGCTGTATTTCAGCG
ATACCGTTATGGACCGGCTTGGCATGCTTGATATACTATATCTTGGATGC
TTTATGGAATTTTGTCCAGCCTAAACGTATTGGTGAAGACAACGAGGCTA
AAACTATCTTGATCACAGGCTGTGACTCTGGATTTGGTTACCATACCGCT
CTAGACTTGAGTTCAGCAAAATGTTACATATTAGCCGGTTGTCTTACAAA
AGATGGCGCCTATAGGCTAGAGAGTGATAAGAAATTCAATGGTAAAGCAT
TTGTTATGGATGTCACGAAAAATGATGACATCACAGATGCAGTTAAATTA
GTTGAAAAGGAGACTGAAAATAAAGGTACGGGTTTGTTTGTTATGTAAAA
CATGACATAAGTTTATTATTATCAAACATAAAGCCAAGTCGACCATTCAG
TTATGCCTCTGCTATCAAAGAATCGGGCGGAGTTTTATTCTTTTCATCCT
GGAGTAAAAAGTGTACGGTGGTACTATGTAGTTGAATTATATATTTAGGT
CTGGGTTAACATTGTAGCAAAGGGCCGGCGATTTGCACAATTACTTCGCC
GCTACGCAGCCTTTCGCAAGATATAGTTTTTTCTTATTCAAAATTTTTAC
TTTCGCGACTTCGGCGCAGCGGCAAAACCCAACGCGCAGCGCACCCTTTT
GCATGACATAAACCTATTTATTCTTTAAAATGTCTACCTTCGCGGCTTCG
GCGCAACGGCGAAACATATTACGCAGCGCAACCTTTCGCTTTGATTACAC
TTTCTTTTCTGACGACATTTGATCTGACGTCACTTTCATTCTCAGAAACT
CTGTATGAGCTTCAGTTGCTGTTAACAAAGATTTGCGCTGCGCGATATGT
TTCGCCGCTGCGCTGAATCCACGAAGGTCATTTCAGGACTAAAAATAACT
CTTTATAAACGCGAAAGACTTGCGCTGCGCAATATCTTTCGCCGCAGCGC
CGAAGCTGTGAAGGCCATTTCTGATGTAAAACTAATCATATAAAATGATA
TTTTAGCATGGATAATACTGCTTCGCGACTTCGGCGCAACGGCGAAATAT
ATTGTGCAGCGCAAGTTTTTGCATGATTACACTTCCTGTGACAACATTTG
AACTGGATATAAAATAAATCATAACATATGCGAAAGACTTGCGCTGCGCA
ATATGTTTCGCCGCTGCGCCGAAGCCGCGAAGGCTGTTCCAGACATAAAA
TAACTCATACCATATGTGAAAGACTCGCGTGGCGATATGTTTATTCGCTG
CGCCGAAGCGCGAAGGCTGTTCCAGAATAAATAACTTATACCATATGCGA
AAGACTCGCGCTGTGCAATATGTTTCGTCGCTGCGCCGAAGTCGCGAAGG
CTGTTCCAAACATAAAATAACTTATACCATATGCGAAGTCACGAAAGCTG
TTCCAGACATAAAATAACTTATACCATATGCGAAAGACTCGCGCTGCGCA
ACATCCTTCGCCGCTGCGCCGAAGTCGCGAAGGTCATTTCAGACTTAGAA
TAGCCCCCATCACACGCGAAAAGCTTGCACACGTAAAATATGTGCGCTAA
CTGCGTAAGCCACGCGCAGCGCCGAAGTAAGTGTGCAAATCGTCGCCCCA
CTCCATTGTAGTGAGAAGTATTAGTGACTTCCATTTGGTTTATAATAAAA
GTTCAGAAATTAGCCTGCTCAACAGATAATGGGTGTCAGTATAAAGTGTT
TTACTTGACAATTTTCTCTTTTTAACATTCTAGGGCTTTATGCGTTAATC
AACAATGCTGGTATCATCCGGCCTTCACCCATCGAATGGCAAACCATTGA
AGAGATGCGTCGCGTTATGGAGGTCAATTTTTGGGGAACAGTTCAAGTCA
CCAAAGCTTTTTTACCACTCTTAAAGAAGCATGGAAGTTCAAGAATTGTT
AATATCTCAAGCATGGCTGGTAAGTTATGATGCAGTTTGAACATTATAAG
ACGATACACGTTTTTTTTTTTATAAGAACGTCAAAAATTTTCGAAGCCTT
TGGATGTTCTTAGTTTTTTGGATTTGAAGCCTAAAAATGTTCTTAAAATG
TTCTTATTTTCAGCATTTGTTGAGCATTTTGATGTAATTTCTTAAGAAAA
TGCATGTTTTTAAGTCTCCAAAGCCTTAGAATGTTCTTAGAATGTTCTTG
AAATTTTGGGCCTCGAAGCCTCGAAGTTCTTATATAGTTTGTTCTTATAT
TAAAAAAACGTGTAGAAAAGCTGGTGTGTATTTTTTCGGAGTTTTAAACA
ATAACACTAATCCTCATTTGCACATTTTATTGTTTATTTAAACTATTGTC
ATTGGGTCACTGAAACAGGGGTGTTAAGTATAATTTTAATAATGACCGAT
CAAATAATTGATAAAGTTCAGAGCACGTTCTAGCACTTAACCGTTCTTCC
TGGAATAAAGCTCCATATAACGAATTTGTTTTCATTTAATAAAAGATGTA
GCTGATGTCATGCCAACAATTAATTTTCGATCATTTTTGTCATAATGACA
AGTTTTCTATTTTCTAGACTGACTACTCAAAAAGATCTGCTAATTATCTT
TAGCAGGATTAAATTAAAGTGATTAGAAGTGATCAGAAAGAAAGATATCC
ATGGATTTATTTTGTAAAACTGAGAATTAGCTCTAGAACGAAGTGTCTTC
AAGCATTAAACATTGTCGAGTACCAGTGGAGGATATAACAACGTCTAAAT
TTCCATATGGAAAGTAATGATTCTGCTTTGACATCCCTTCTAAGTTTAGT
TACGTTAAGTTTACGCTAAAACATAGATGTAACAAGGATATTCAACGCAA
AATCTCGCTTTCCTTTTCACAATCATTGTGAACTTCAAAGTCCTATATAC
TGATTTATAAGTCCGAATCATCTGAATCTAATTTTAGCTTGAGAGCTAAA
TGACAAAGCCTTCATCCTTTAATGTCTATGATTGTTTACAATTATAGCGA
TTCTCATTTCATTAATTCTTTATAGGACGTGTTCTGCTTGGCTACAGTAC
ATCATACTGTTTCAGTAAATACGCTGTCGAATCATTCTCAGATGGTTTAC
GATACGAAATGAAACCGTTCGGGATATCGGTTCACCTTATCGAACCCGGA
ATGTATAAAACGGATATTTTGAATCCGAAAACGATCACGAATGGATTGAA
GAAGAATTGGGATGAAACTGATGAAGAAATGAAAGAAGAATACGGTGAAC
CATACTTCAATGAACGTAAGTGTAGTTTACTCTCCATATTTAGAGCCCCC
GGGGGGTGCTTGGTAAAAATCAAAAGTCCTAAATTAGTCTCTCTAAGGGT
TGCTTTTTCACACACTCGAATCAAAGAAGAGTGAAAAGTCAAGAAAGTTA
GTAAACTTTTCGAAAGCAATGAAGACTTCTTTTGAAAATCGAAGAAACTT
TTGTGAAAATGTCTCTCTGAGGGTAACCATTTTAGCAATTTTATATCGCT
AAGAGTCAAAAATCAGTCCCTGAGTTCGAACCTCTGTAGCTGGAATCTCT
CCTTAACTCGAATTTTCTCGTCCCTTTATTTATGCCTAATAAACCTTACT
CAATATGGAAATTCATTTAAATCAAACAACTTTGTGTTTCCGTGTGGGTT
CGAGTTATCACCACTCACTCCATGAAATACTATACACCCTTATTATCACG
CTGGCAATAAAAATCTTCAATAGGAAAAGCAACCTCCTTAATCCCTGCAT
ATAGTTCCACTTGTTATCGAATTTCCCTACAACCTTATAATCAAATCAAG
ATGTCAACATTGAAAAATCTCAATTCTTATATAATTTTCAGTGTCAAAAC
GTTATGAAGATTTAATCGAACAAATTGCATCACCGAAGTTTCATCAAGTC
GTTTCTGCCATTCACAACGCCACACTTTCATATAACGCCAGGGCGCGTTA
TGTGATCGGGTTGGACGCCCATACTTTATGGATGGCGATTTCTACGTTTC
CAACAGCTGTCGGCGATTGGATCAGTTCAAAAGTTGCCGCTCCTATAAAA
CCTGCTGTTGTTTTAAAACGAGAAAAACGTAAGA

Coding sequence (CDS) from alignment at sc0000228_pilon:81499..85882-

>MSTRG.19658.1.p1 ID=MSTRG.19658.1.p1|Name=MSTRG.19658.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4068bp|location=Sequence derived from alignment at sc0000228_pilon:81499..85882- (Clytia hemisphaerica_ch_hm2_pilon)
TGTCAAAACGTTATGAAGATTTAATCGAACAAATTGCATCACCGAAGTTT
CATCAAGTCGTTTCTGCCATTCACAACGCCACACTTTCATATAACGCCAG
GGCGCGTTATGTGATCGGGTTGGACGCCCATACTTTATGGATGGCGATTT
CTACGTTTCCAACAGCTGTCGGCGATTGGATCAGTTCAAAAGTTGCCGCT
CCTATAAAACCTGCTGTTGTTTTAAAACGAGAAAAACGTAAGGACGTGTT
CTGCTTGGCTACAGTACATCATACTGTTTCAGTAAATACGCTGTCGAATC
ATTCTCAGATGGTTTACGATACGAAATGAAACCGTTCGGGATATCGGTTC
ACCTTATCGAACCCGGAATGTATAAAACGGATATTTTGAATCCGAAAACG
ATCACGAATGGATTGAAGAAGAATTGGGATGAAACTGATGAAGAAATGAA
AGAAGAATACGGTGAACCATACTTCAATGAACGGCTTTATGCGTTAATCA
ACAATGCTGGTATCATCCGGCCTTCACCCATCGAATGGCAAACCATTGAA
GAGATGCGTCGCGTTATGGAGGTCAATTTTTGGGGAACAGTTCAAGTCAC
CAAAGCTTTTTTACCACTCTTAAAGAAGCATGGAAGTTCAAGAATTGTTA
ATATCTCAAGCATGGCTGATGCTTAGTTGCTGTATTTCAGCGATACCGTT
ATGGACCGGCTTGGCATGCTTGATATACTATATCTTGGATGCTTTATGGA
ATTTTGTCCAGCCTAAACGTATTGGTGAAGACAACGAGGCTAAAACTATC
TTGATCACAGGCTGTGACTCTGGATTTGGTTACCATACCGCTCTAGACTT
GAGTTCAGCAAAATGTTACATATTAGCCGGTTGTCTTACAAAAGATGGCG
CCTATAGGCTAGAGAGTGATAAGAAATTCAATGGTAAAGCATTTGTTATG
GATGTCACGAAAAATGATGACATCACAGATGCAGTTAAATTAGTTGAAAA
GGAGACTGAAAATAAAGTGTCAAAACGTTATGAAGATTTAATCGAACAAA
TTGCATCACCGAAGTTTCATCAAGTCGTTTCTGCCATTCACAACGCCACA
CTTTCATATAACGCCAGGGCGCGTTATGTGATCGGGTTGGACGCCCATAC
TTTATGGATGGCGATTTCTACGTTTCCAACAGCTGTCGGCGATTGGATCA
GTTCAAAAGTTGCCGCTCCTATAAAACCTGCTGTTGTTTTAAAACGAGAA
AAACGTAAGGACGTGTTCTGCTTGGCTACAGTACATCATACTGTTTCAGT
AAATACGCTGTCGAATCATTCTCAGATGGTTTACGATACGAAATGAAACC
GTTCGGGATATCGGTTCACCTTATCGAACCCGGAATGTATAAAACGGATA
TTTTGAATCCGAAAACGATCACGAATGGATTGAAGAAGAATTGGGATGAA
ACTGATGAAGAAATGAAAGAAGAATACGGTGAACCATACTTCAATGAACG
GCTTTATGCGTTAATCAACAATGCTGGTATCATCCGGCCTTCACCCATCG
AATGGCAAACCATTGAAGAGATGCGTCGCGTTATGGAGGTCAATTTTTGG
GGAACAGTTCAAGTCACCAAAGCTTTTTTACCACTCTTAAAGAAGCATGG
AAGTTCAAGAATTGTTAATATCTCAAGCATGGCTGATGCTTAGTTGCTGT
ATTTCAGCGATACCGTTATGGACCGGCTTGGCATGCTTGATATACTATAT
CTTGGATGCTTTATGGAATTTTGTCCAGCCTAAACGTATTGGTGAAGACA
ACGAGGCTAAAACTATCTTGATCACAGGCTGTGACTCTGGATTTGGTTAC
CATACCGCTCTAGACTTGAGTTCAGCAAAATGTTACATATTAGCCGGTTG
TCTTACAAAAGATGGCGCCTATAGGCTAGAGAGTGATAAGAAATTCAATG
GTAAAGCATTTGTTATGGATGTCACGAAAAATGATGACATCACAGATGCA
GTTAAATTAGTTGAAAAGGAGACTGAAAATAAAGTGTCAAAACGTTATGA
AGATTTAATCGAACAAATTGCATCACCGAAGTTTCATCAAGTCGTTTCTG
CCATTCACAACGCCACACTTTCATATAACGCCAGGGCGCGTTATGTGATC
GGGTTGGACGCCCATACTTTATGGATGGCGATTTCTACGTTTCCAACAGC
TGTCGGCGATTGGATCAGTTCAAAAGTTGCCGCTCCTATAAAACCTGCTG
TTGTTTTAAAACGAGAAAAACGTAAGGACGTGTTCTGCTTGGCTACAGTA
CATCATACTGTTTCAGTAAATACGCTGTCGAATCATTCTCAGATGGTTTA
CGATACGAAATGAAACCGTTCGGGATATCGGTTCACCTTATCGAACCCGG
AATGTATAAAACGGATATTTTGAATCCGAAAACGATCACGAATGGATTGA
AGAAGAATTGGGATGAAACTGATGAAGAAATGAAAGAAGAATACGGTGAA
CCATACTTCAATGAACGGCTTTATGCGTTAATCAACAATGCTGGTATCAT
CCGGCCTTCACCCATCGAATGGCAAACCATTGAAGAGATGCGTCGCGTTA
TGGAGGTCAATTTTTGGGGAACAGTTCAAGTCACCAAAGCTTTTTTACCA
CTCTTAAAGAAGCATGGAAGTTCAAGAATTGTTAATATCTCAAGCATGGC
TGATGCTTAGTTGCTGTATTTCAGCGATACCGTTATGGACCGGCTTGGCA
TGCTTGATATACTATATCTTGGATGCTTTATGGAATTTTGTCCAGCCTAA
ACGTATTGGTGAAGACAACGAGGCTAAAACTATCTTGATCACAGGCTGTG
ACTCTGGATTTGGTTACCATACCGCTCTAGACTTGAGTTCAGCAAAATGT
TACATATTAGCCGGTTGTCTTACAAAAGATGGCGCCTATAGGCTAGAGAG
TGATAAGAAATTCAATGGTAAAGCATTTGTTATGGATGTCACGAAAAATG
ATGACATCACAGATGCAGTTAAATTAGTTGAAAAGGAGACTGAAAATAAA
GTGTCAAAACGTTATGAAGATTTAATCGAACAAATTGCATCACCGAAGTT
TCATCAAGTCGTTTCTGCCATTCACAACGCCACACTTTCATATAACGCCA
GGGCGCGTTATGTGATCGGGTTGGACGCCCATACTTTATGGATGGCGATT
TCTACGTTTCCAACAGCTGTCGGCGATTGGATCAGTTCAAAAGTTGCCGC
TCCTATAAAACCTGCTGTTGTTTTAAAACGAGAAAAACGTAAGGACGTGT
TCTGCTTGGCTACAGTACATCATACTGTTTCAGTAAATACGCTGTCGAAT
CATTCTCAGATGGTTTACGATACGAAATGAAACCGTTCGGGATATCGGTT
CACCTTATCGAACCCGGAATGTATAAAACGGATATTTTGAATCCGAAAAC
GATCACGAATGGATTGAAGAAGAATTGGGATGAAACTGATGAAGAAATGA
AAGAAGAATACGGTGAACCATACTTCAATGAACGGCTTTATGCGTTAATC
AACAATGCTGGTATCATCCGGCCTTCACCCATCGAATGGCAAACCATTGA
AGAGATGCGTCGCGTTATGGAGGTCAATTTTTGGGGAACAGTTCAAGTCA
CCAAAGCTTTTTTACCACTCTTAAAGAAGCATGGAAGTTCAAGAATTGTT
AATATCTCAAGCATGGCTGATGCTTAGTTGCTGTATTTCAGCGATACCGT
TATGGACCGGCTTGGCATGCTTGATATACTATATCTTGGATGCTTTATGG
AATTTTGTCCAGCCTAAACGTATTGGTGAAGACAACGAGGCTAAAACTAT
CTTGATCACAGGCTGTGACTCTGGATTTGGTTACCATACCGCTCTAGACT
TGAGTTCAGCAAAATGTTACATATTAGCCGGTTGTCTTACAAAAGATGGC
GCCTATAGGCTAGAGAGTGATAAGAAATTCAATGGTAAAGCATTTGTTAT
GGATGTCACGAAAAATGATGACATCACAGATGCAGTTAAATTAGTTGAAA
AGGAGACTGAAAATAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19658MSTRG.19658Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19658.1.p1MSTRG.19658.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19658.1.p1.exon4MSTRG.19658.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19658.1.p1.exon3MSTRG.19658.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19658.1.p1.exon2MSTRG.19658.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19658.1.p1.exon1MSTRG.19658.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000228_pilongenomesc0000228_pilon:81499..85882 -