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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000080_pilon:628426..630284- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11173.1.p1 ID=MSTRG.11173.1.p1|Name=MSTRG.11173.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1859bp|location=Sequence derived from alignment at sc0000080_pilon:628426..630284- (Clytia hemisphaerica_ch_hm2_pilon)
TATAAAAGCCCATCAGATTTGGAGTAAAATCATTGCAGTTTGTTTTTGAG
ACCTTTCAAAGATAATCTGCAAAGAAACTCAACAATCATGAAGACCGCTT
TCGTTTTCGTTACTTTAGCTTTGGCATATGCCTCAGCTTTGACATTCGGC
GATGCTGGTAGGTTTAATATTTATGATAAACTTTCCATGTTGTAGTCGTG
TTGATATAATTGTGCACTACAAACACTTTAGCGTTTTCTTATTTATGGTA
GAATTGCTATTTTTTTCTCATTTTGGTTGATTTGTAAATCAGTATCACCA
GAGTTTAAAGATCCTTTTCTTCTTGGATTTACTCATTAAATCTTACGTTA
TACACATTTCTTTGATGCTAATCTTTTTTCATTTCAGATGGAAAATTGAC
CTGTGGATCGAACAGCATGACTGTCACTTTGGACAAAGATAAATTCGACC
AACACGGTCGTCAATTCAGACTTCATTTCAAAGGAGCTACCGACCCAGCC
TGTACTGTCAAAAGCGATGCCGGAGCTGATGGAGCCTTAGCAATCACCTC
AAATTACAATGCTTGTGGAATCGTTCTTGCTGTCAACGCTGGAGAAGTCT
CCTACAGCCAAACTGTCTTGGTTACTTATGGAAAGACACCAAACAGCTTT
GTTCAACGTGAAGAAGTCATCTCTTTCGAAGTCTCCTGCAACGTTGATGC
TGCAGTTGCAGTTGGACTTGCCGGAGCTGGACACGTCAATGTCTCAAGCT
TGGAAGAGCAAACTATTTCCAAATGTAAGCAACCACGTTTTTATCTATTA
CATTGAAACAACAAAAGGTTTTTAGCTCATTTTAAAGTTTAAAATTGAAG
TTTTGATTTACAAGTATATGGTTTTAAAGTTTTTATCGGGAGTATGTCCT
AACTTTCATCATACAAACTTTTTAAAATTTTAGCGGAAGCAAGCGAGTTT
GACATCAAATTGGTCAGAACCACCGACGGTTCTTTCAGCTCTGAAGATTC
ATCCTCACAAATGCGATTGGGAGATCAAATGTATTTCAAACTTGAATTGA
ACACCATCCGTGATGACTTGAAAATCTCACCACAAACTTGTTACGCTACC
AGCACCGCTGACTCCGCTGAAAAATATTTCCTCGTTCAAGATGGGTAAAG
ATTTTGTTTGTTTCGATCATCACAACTCTAAACACGATATACATCTTATT
AATCATCTCCCCAAAAGTCGCGTAGCAAATCCTTTTAGACGCAATCTTTT
CAGCTCAATTGCCAACTTTTTTTCCAAAAATGCCAAACCTAAAGAATAAA
GTTTTTCTAATCATTGGCGTGATATTGTTTGAATACAGTGTTTAAGAACA
TCAAAGAGTTAAGATTCATATCTGAGTACATTTGAACATTTCTAAGAGTA
AATACGAATGAAGTTTTAGATTTTTCGTCACTTTTCTTTCAGATGCGTAA
ATGCTGCTGACGGAACCGTCAAAGTTACTGAAACTGACGACAAGACAGTT
TACGAATGGGAAAATGAAGCTTTCCGATTTTTCGGAGCATCTGATGCTGT
TTACATCACATGTGAAGTCACCGTTTGTGAATCATCCAATGGCTCCACAG
AATGCAACCGATGTGAAGCCACAACCCGTCGACGACGTGCTCTCTCCAAA
TCTGCCATCTACCGCTCCAAAGCTTACAGCAAAATCTTCACTCTTGCTTA
GATTTGATGCTACTTTATAAAACTTAGAATAAACCCATTTTGTAATGCGT
TTTGAATCTTTTTTCAAAACGCACCTCGTTTTTAATTTGTCTTTTAGCAA
TTGTGATTTACTAAATTATTTTTGCAATAGCTTTGTATTGCTTTGTATTT
ACTAGGAGA Coding sequence (CDS) from alignment at sc0000080_pilon:628426..630284- >MSTRG.11173.1.p1 ID=MSTRG.11173.1.p1|Name=MSTRG.11173.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3708bp|location=Sequence derived from alignment at sc0000080_pilon:628426..630284- (Clytia hemisphaerica_ch_hm2_pilon)
ATGCGTAAATGCTGCTGACGGAACCGTCAAAGTTACTGAAACTGACGACA
AGACAGTTTACGAATGGGAAAATGAAGCTTTCCGATTTTTCGGAGCATCT
GATGCTGTTTACATCACATGTGAAGTCACCGTTTGTGAATCATCCAATGG
CTCCACAGAATGCAACCGATGTGAAGCCACAACCCGTCGACGACGTGCTC
TCTCCAAATCTGCCATCTACCGCTCCAAAGCTTACAGCAAAATCTTCACT
CTTGCTTAGCGGAAGCAAGCGAGTTTGACATCAAATTGGTCAGAACCACC
GACGGTTCTTTCAGCTCTGAAGATTCATCCTCACAAATGCGATTGGGAGA
TCAAATGTATTTCAAACTTGAATTGAACACCATCCGTGATGACTTGAAAA
TCTCACCACAAACTTGTTACGCTACCAGCACCGCTGACTCCGCTGAAAAA
TATTTCCTCGTTCAAGATGGATGGAAAATTGACCTGTGGATCGAACAGCA
TGACTGTCACTTTGGACAAAGATAAATTCGACCAACACGGTCGTCAATTC
AGACTTCATTTCAAAGGAGCTACCGACCCAGCCTGTACTGTCAAAAGCGA
TGCCGGAGCTGATGGAGCCTTAGCAATCACCTCAAATTACAATGCTTGTG
GAATCGTTCTTGCTGTCAACGCTGGAGAAGTCTCCTACAGCCAAACTGTC
TTGGTTACTTATGGAAAGACACCAAACAGCTTTGTTCAACGTGAAGAAGT
CATCTCTTTCGAAGTCTCCTGCAACGTTGATGCTGCAGTTGCAGTTGGAC
TTGCCGGAGCTGGACACGTCAATGTCTCAAGCTTGGAAGAGCAAACTATT
TCCAAATATGAAGACCGCTTTCGTTTTCGTTACTTTAGCTTTGGCATATG
CCTCAGCTTTGACATTCGGCGATGCTGATGCGTAAATGCTGCTGACGGAA
CCGTCAAAGTTACTGAAACTGACGACAAGACAGTTTACGAATGGGAAAAT
GAAGCTTTCCGATTTTTCGGAGCATCTGATGCTGTTTACATCACATGTGA
AGTCACCGTTTGTGAATCATCCAATGGCTCCACAGAATGCAACCGATGTG
AAGCCACAACCCGTCGACGACGTGCTCTCTCCAAATCTGCCATCTACCGC
TCCAAAGCTTACAGCAAAATCTTCACTCTTGCTTAGCGGAAGCAAGCGAG
TTTGACATCAAATTGGTCAGAACCACCGACGGTTCTTTCAGCTCTGAAGA
TTCATCCTCACAAATGCGATTGGGAGATCAAATGTATTTCAAACTTGAAT
TGAACACCATCCGTGATGACTTGAAAATCTCACCACAAACTTGTTACGCT
ACCAGCACCGCTGACTCCGCTGAAAAATATTTCCTCGTTCAAGATGGATG
GAAAATTGACCTGTGGATCGAACAGCATGACTGTCACTTTGGACAAAGAT
AAATTCGACCAACACGGTCGTCAATTCAGACTTCATTTCAAAGGAGCTAC
CGACCCAGCCTGTACTGTCAAAAGCGATGCCGGAGCTGATGGAGCCTTAG
CAATCACCTCAAATTACAATGCTTGTGGAATCGTTCTTGCTGTCAACGCT
GGAGAAGTCTCCTACAGCCAAACTGTCTTGGTTACTTATGGAAAGACACC
AAACAGCTTTGTTCAACGTGAAGAAGTCATCTCTTTCGAAGTCTCCTGCA
ACGTTGATGCTGCAGTTGCAGTTGGACTTGCCGGAGCTGGACACGTCAAT
GTCTCAAGCTTGGAAGAGCAAACTATTTCCAAATATGAAGACCGCTTTCG
TTTTCGTTACTTTAGCTTTGGCATATGCCTCAGCTTTGACATTCGGCGAT
GCTGATGCGTAAATGCTGCTGACGGAACCGTCAAAGTTACTGAAACTGAC
GACAAGACAGTTTACGAATGGGAAAATGAAGCTTTCCGATTTTTCGGAGC
ATCTGATGCTGTTTACATCACATGTGAAGTCACCGTTTGTGAATCATCCA
ATGGCTCCACAGAATGCAACCGATGTGAAGCCACAACCCGTCGACGACGT
GCTCTCTCCAAATCTGCCATCTACCGCTCCAAAGCTTACAGCAAAATCTT
CACTCTTGCTTAGCGGAAGCAAGCGAGTTTGACATCAAATTGGTCAGAAC
CACCGACGGTTCTTTCAGCTCTGAAGATTCATCCTCACAAATGCGATTGG
GAGATCAAATGTATTTCAAACTTGAATTGAACACCATCCGTGATGACTTG
AAAATCTCACCACAAACTTGTTACGCTACCAGCACCGCTGACTCCGCTGA
AAAATATTTCCTCGTTCAAGATGGATGGAAAATTGACCTGTGGATCGAAC
AGCATGACTGTCACTTTGGACAAAGATAAATTCGACCAACACGGTCGTCA
ATTCAGACTTCATTTCAAAGGAGCTACCGACCCAGCCTGTACTGTCAAAA
GCGATGCCGGAGCTGATGGAGCCTTAGCAATCACCTCAAATTACAATGCT
TGTGGAATCGTTCTTGCTGTCAACGCTGGAGAAGTCTCCTACAGCCAAAC
TGTCTTGGTTACTTATGGAAAGACACCAAACAGCTTTGTTCAACGTGAAG
AAGTCATCTCTTTCGAAGTCTCCTGCAACGTTGATGCTGCAGTTGCAGTT
GGACTTGCCGGAGCTGGACACGTCAATGTCTCAAGCTTGGAAGAGCAAAC
TATTTCCAAATATGAAGACCGCTTTCGTTTTCGTTACTTTAGCTTTGGCA
TATGCCTCAGCTTTGACATTCGGCGATGCTGATGCGTAAATGCTGCTGAC
GGAACCGTCAAAGTTACTGAAACTGACGACAAGACAGTTTACGAATGGGA
AAATGAAGCTTTCCGATTTTTCGGAGCATCTGATGCTGTTTACATCACAT
GTGAAGTCACCGTTTGTGAATCATCCAATGGCTCCACAGAATGCAACCGA
TGTGAAGCCACAACCCGTCGACGACGTGCTCTCTCCAAATCTGCCATCTA
CCGCTCCAAAGCTTACAGCAAAATCTTCACTCTTGCTTAGCGGAAGCAAG
CGAGTTTGACATCAAATTGGTCAGAACCACCGACGGTTCTTTCAGCTCTG
AAGATTCATCCTCACAAATGCGATTGGGAGATCAAATGTATTTCAAACTT
GAATTGAACACCATCCGTGATGACTTGAAAATCTCACCACAAACTTGTTA
CGCTACCAGCACCGCTGACTCCGCTGAAAAATATTTCCTCGTTCAAGATG
GATGGAAAATTGACCTGTGGATCGAACAGCATGACTGTCACTTTGGACAA
AGATAAATTCGACCAACACGGTCGTCAATTCAGACTTCATTTCAAAGGAG
CTACCGACCCAGCCTGTACTGTCAAAAGCGATGCCGGAGCTGATGGAGCC
TTAGCAATCACCTCAAATTACAATGCTTGTGGAATCGTTCTTGCTGTCAA
CGCTGGAGAAGTCTCCTACAGCCAAACTGTCTTGGTTACTTATGGAAAGA
CACCAAACAGCTTTGTTCAACGTGAAGAAGTCATCTCTTTCGAAGTCTCC
TGCAACGTTGATGCTGCAGTTGCAGTTGGACTTGCCGGAGCTGGACACGT
CAATGTCTCAAGCTTGGAAGAGCAAACTATTTCCAAATATGAAGACCGCT
TTCGTTTTCGTTACTTTAGCTTTGGCATATGCCTCAGCTTTGACATTCGG
CGATGCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080_pilon | genome | sc0000080_pilon:628426..630284 - |
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