MSTRG.11502.3.p2 (mRNA) -

Overview
NameMSTRG.11502.3.p2
Unique NameMSTRG.11502.3.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000083_pilon:1108530..1116270+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11502.3.p2 ID=MSTRG.11502.3.p2|Name=MSTRG.11502.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7741bp|location=Sequence derived from alignment at sc0000083_pilon:1108530..1116270+ (Clytia hemisphaerica_ch_hm2_pilon)
agaTAAGAATGTGGAATACATTCACAATGCATGCGCAAGTCTACTTCAAT
CATACCAGTATCAAAAATCACTTGGCAAAATCAATGATGATACCACAACA
CAACATGAAactgaatttgaattgaatAATATTCAAATAAGTAGTACCTC
AATGCTGACTTCTAAAGCTGAAGAGTCcggtaaagttttttttcatccaa
ggatgtgaaatcttttttcatcaaatctgGAATAAAAAATTGGGCTTCTT
ATATCCAACCTAAGCTTAGGAGTCTATAGAATTATCTATCTTTATCAGAG
TATTAAATTTTGTTATATACTGTTTTACTTCACTCGTTCAATCTAATCGT
GAACTGCTAAATAAATTTCACAGTGGCCCTCCTTGGAAGTGATTCTTTAG
CTTCCCAAaagtaaattaatttttcagagcatgcccatagttcggacccc
ccctTTCCGAAACAATGaagaagggggatcagaaattttcatgaaaaaag
ggGGGTAGCAAGGAAGGAGGCGTAGTTTGAGAAGGGGGATAGTTTAAGAA
CAGGCTAGATTAAGAAGGGGGCTAGTTTAAGAAGGGgagggggcttacat
atatattgtagattattttcaagcactgtttgttatgaaatttggtcttc
atgaaaggaagttttctgttagagtagtccgagtcaaaaagaagaaaaaa
gtttgttatttcgctttctctctctaaagataaTTAAGATATATTTGTTA
GctgtccaaaatccttgggataggcatttttaaaggatgAGGGGGTGTCA
AGAAAGGGGATCAGatccctttccgcactatgatgCCACTGAACATCTTg
atttattatttctttaaatatgATATTGTATATACTGCATTTTTAAGGaa
catttttgactttttaaaactCTAAGTTTAATGTTTACAAGATCAACTCA
ACTCAATGCTAATGAAACTTTGGCTTTTCTCATGTTATAGAGGAATCAAT
ATTTCAATGGATACCTTTAACGAGTGGTGATCGTCAAATATTGTCAGTCA
CAGATAGTCGTCTTCAAAGTGCTTCACCTACACTCATACTGCAATCGTGT
GAATTCTTCAAATTTATCTTGTTGCATGATTTTCCAGCTGAAGTCTTCAT
TCAAAGACCTAACATTTTGAAGGTTTGTTTTTCAATGATATATTCGAAAA
TTAGCTGAACATATTATGTTGTTTTTAAGATTGAGAATTTCTTTGCACTT
GCACAATACTAAGTTACACTTAGCCAGGCTTTATGTCTGGATTGGATAAT
GATATTCTGATTGCAAAACTGTTCTGGAACTTTTCTGGAACGTCATTTTA
ATAATGATAACatatattttgttttagagtctCCTTGCTGTTCTGAGCAT
TCATAAAACTAACAATTTAGAcattgttgaaaatattttaagttcTCTAC
TGAAATTATCCAAGAAATTGTTCAGTCGCTTTTTGCAAAACAAAGATGTT
GATATTTGGCAAAAACAATTTAGTAAGTGTTTTGTTTTCTAGCAGTTTCT
AGGTACTTTTATTCTCAATACACCATTataatctttttgatttttccctt
tAAAATACAATGCATTATCTATTTCTTCTGGCCtatttgaaattattatt
aAGGTAATGTCgtttatttcaagaatttaaatATGTGTTTcctttttcag
ctgttttcagagacaaatttaaaattgatgatgTCTATAAAATGTGTATT
AAATTGATATTTACAATAACTATCTTCTTCCATTCAACACTCTCAAAACG
CTCAGGAATCGGCATTTTTCTTCAGTAATACCAAAAATTGAgtctttgtt
tcttttcattttagtaTCAGAAGATATTCAATCGTTGAGTATTTCCACGA
ACCAAACACAATCTTCAAGTCTAACCAGTAAACTATCAAATGATGTTCCA
GATGATTTGACATCAGTGAGTGACCAGAGAACAACAACTTTTGAAAACAG
TATTAGCGTTGAACCTTCACCGAGTGCTCTGCAAACTGAAGGTACAGGAA
CAAATAGTACATAATGTTATTTGTATGTTTAAagtgggggaggggggggg
cgtacgggacttTGTAATACCGATATACTGATCAATATGGGATATATTAC
CGATGATATACTAATAACTTTTTCGCTCCAATACCTTTACCGATATGGAG
ATTTTCTAAACGTCCCCtttcttattgaaaatttcaatattttgtaccaa
cattcataTTTAGATTTTCTAGACTCTCTTTCCTTTGTATCTCTTAAAAG
ATTCAATGATGAAAACATGAATTCTATTTCACATGATCTTTGATACCGAT
GGTTGACCGACATAAAAAATAGTCTTTTACCGATACCGAGATGCTCTTGA
AATACCGATTACCGATTTATTTTTGTTCCCTAATACCGATGTACCAATCT
AAAATAAGGCCAATATCCGCCCTCCCTTTTAAAGTGGCTGAGCTTAATAG
CTCTTTTTCCACTTAGacttaatttatatttttaagaatttaagaatttc
ggcctagcgtgcacgctcgTGCGATCGATGGAAGCAGGCCTTTAGGAGGA
AATAAAGGTGTCATCTCAAAGTGTGGACTTTACAGATTTTGAGATACCAA
ATATATACCACCATGTCTTCCTTCTCCActaatcttttatttcttttcat
tatGTTACTTAAAAATATTGTGTATCTCTTTGTTCCTATGTAAAGCATCT
AAGCCTCAAGAGCAATCCCGTACAACTATCATCCTTCACAATTTATGGCT
ATTAGAACTCTCTAGAAAAATAATTCTTAGTATCATTTTTACAATCATTT
TCACTTGTTTACTTATCAGATGATATGGAGAGCGAGGTTCTATCAGAGGC
TTTTCAGCAAGCACGAATGCATCTAGATGAATTTATCACAACAATGCTGC
TCTCGACCATAGAGCTCTTTGCTCTCTATCAAAATAATGATAAGCTTTTC
ACAGTTGTCACATCGTTGGTGACTCAATTGGTAACTTTTTTGAAAGCAGT
TGGATTAAAAACATCTTGGAGTCTATCAGACAAACAATCTAAAACAAATG
TAAGTTCTTTAAAACAAACAGGCAAGCTGTCAATCATATTGTGATTTCAT
GCAGACTCTCATATCTTTAAAAAGAGGGTCGCCACTAGATAAGTGTGACC
TGGTTGCCGAAGACCCGTGATTGACTCACTATTGCAGAAGAGTGACCAAA
ATTATGTAGACAGAGCCAAATTTTCCCTGGTCACGAGCTGAATATACTGA
GAATTAGATAACATTTTAAAACACCTCTaagaatgggccattccattttc
tATCCATACAGAGGGTCGACGAACATCTCCAAGGGGGAATTAAAGCAGAA
CTTCCAGTGGGTCTAAAAGactgtttttttcatttttccaggggataaca
aattgttttaaaatttcaagggggtaaaagactgattttagttcgtccac
cgtcacttttatgaaaagaaattttccaagggttcttttgcaaatatgGA
CATTAAATGGAATGGCCCGATGAAACCAATGCAATTATAATCACAACCAT
AACAAAGATGGTGCATTGTCAGCAGGTTCGGTAGAgggtttttttttgca
ttcttctCAATATAAGTAAACGACGCTTTCttaacttaaaggttttattt
ttcattttcatttctctttctgaccaatcttgctccacagcTGTGTCAAt
tcattataaaaaagcttgtaaattaaaattgacgagtgagcaaacgatac
cactcttatttaaaaacaaaacctttaaagtatCTGATTGTAATTTTCCT
AGGTACATTCAATGATGGCCATCCTAAGAAAATATAACGATACTGTCACT
TCCATGTTACACAAATCAGAAAGTGAAACGATGGAGGATGGTAAGATGCA
AGAATTGAAACTCGTAGTTCTGTGGAAACAAATTTTACGTTTTCTTCACG
TCAGTGTACCGAAAGATAAGGTAcgcatttttatttaaagtccgGTCTTT
ATATAGCTTCTACGATATTTTACtgttttgttaattttcaagcTTCTTTA
CATTTCCCCTTTTAGCACTGAGCGCTACAGAATAAAGAGTTCATTTCCTA
TACAATAATAGTTAAGCCATTTTAAATGGGTATAAACACCCAAATCTAAG
AAAAACTCGTCTCTTCTGAGTTTTTTGTTAATGTGGTATAAGTCGCGGTG
CTCCTAAGTAGTCTGTACTACCGATGGTACAAAATCTTAGAAGTCAGGTT
CTATTTCTTATGACGCCAATGGTACTTTAAACGCTACAGGGATAAGTAAA
GAACAATAAAAGCTGTTTGCGAGGAAAATATAAAGGTCGAACTATTATAA
AAAAGCtcttttttcgttgttttttagATCTACCAGGTTCTTGGTGAAGA
GAGCCGATCCTTTCTGTTCGATCGGTTATCGCACGTTTCGTTGAAAAGAT
CTTTGCCAAGATATTGGAGATTACTGGAGAACGTTTTGACTTCGATTGAT
GATCGATTCCTTGATGATTATAAAGAAGCAAAAAGACTTGTGGCATCTTG
CAAAGCAATCGATGATTTCATTGGCTTGTTCGGTGATAATGAGGTACAAC
TATAGTAAACTCTATCTACTTTGAACCTctacatttcaaatatttctgta
atttaaACATTGATCCTATCAGCTTGAAAGTACTTTCAAGTTTTCTTTCT
TCGGAATCATTGTTTTAAGCATattaagtaagtctgcgaccgtagtcgga
ggcgacccgaaggctcctcttccgatagctatctaccagaaggtagggga
gggcgccactctttctccctggatttctccacttacccttgatccttctc
ttaattactgagcatcaagcagagaggcatcaagtaccattttggaaatc
tttggtatgacccggctggggattgaacccataaccttgcgcaccgtagt
tGGATACtgtaccactgcactacggccGCTAAGGTGGATTTGCAGTTGCA
CACATGTTACGCATGCAAATAAAGCTATtagtttcataaaaaacgaccat
aaatatgtataaaaaattctattttataaaaatgaacttgaaaacaTTGC
AAGGGCTTGCTTTTCTATCATAATCAGAAGCGTCTACCACTTCTTTTGTA
GGGATCCAATGCATCGGACCAGAAATTGATGGAACACTTTAAGATGGTCA
TTCCTGGCTTAACTTGGCATTGCCATGAACAATTCATTCACAAAACCATT
GCGATGTGTTCGGAGCGATATATCAAAGCAaaggaaaataaagaacaatG
GACAAACTCTCTGCTTGAGATATTTCAACATGAAGAAAAATATGGTCTGC
GTATTGCTTTCAAATCAACGCTCGAATTCTTGAAGGTAAGTGGTTGCGTA
TCattataaaaatttaagaaGATATTGTCACCAAAGATTTTGTCAAACAC
AGAGACTTTATCAGGCAACAAgaaagtttgtatttttttcaacacTGAAA
GCTCTCTTCTTTGAATGAATGAGTGAGTGAGTTAACTTTTCTCTATTTTC
AGGAAGCTTTTTCAGATTCCCTCGTATCCAGCCCGTTgtcaatcaaacat
caaaaagcTTTCGTTTTCATCCAAAAGAAATTTCTCCTCTTATTTTGCAA
GTCATGTTACCATAAAGACAAACAGGTAGCCTCTCCTTTCTTATTTCCTT
TAGTATTTATCTACCCGAAACCCTTATATCTTTAAAATCTAAAGTCGCGT
ATCTAACAATACTTCGAAAACAATCAAAGTGTTCTTGAATTGCAAGCCGA
AAGCCAATTTTCGAAACGtttttttACATCTTCATCTTCAGATAGCTAAC
ACTTGCAAGAATATCATATCACTTCTAATTCAAAGTCAACTGAACATGAG
TGCAAAGGCCTGGCAACAGACCCTTGACATCCTGCCTACGATTCTCCCAT
TATTCCACGGTCTGTTGGCTTCGAAAGAAGATTCTGTTTTTGACTCTATT
ATGGATTCTATGTTGGGACATCAACAATCTATAATCGACGCTAACGGGCG
TGTTACTGGTTTAAGTCCTTTTGAGAAGTTCAAATCTTCACTACGCCTCA
TGAATCACCGTTCACAAACTGTCCGACGTAAAGGATTCGCTTATTCGTTA
ACCTATTTGACCAATCACGATCAAGATCAAGATCACGTGATAAGTTATAC
AAAATACACAAACTTATACACGGCAGAGGATTTAATGATGTTTAACGGTA
TAGAACTTGGTAAATTCCGACCGAATGCTGATTTACATTTCGATTCTATC
ACTGATGACAACGTGATACAACTGTGGAAGGTTTTGAAAGATGAGACAGT
CCAAGAAACACTGAGACAATCAGTTCTAGATCAACTCGCTGTTATACTAC
AAGGTATTTCACATAGTTACCGTTTATTTATGTATCTTTATATTATTCTA
GCGAGAAAGTTCTTCCCTAAATCTAATGTATACTCacacacccttctcac
agacccactggaaaaattggccaaagtATCGTCCTCGGTGGAAAAtgttc
ctccaatttttgtccccattgaaaataatcaaataaaccaatccccgCTG
aactttctgacttgaaaacaaaagaagctAAATCCCCGGTCATAAAAAGT
ATGGGAATAcaaatccccatcgagtttcagtccgtttaTTTTaccccact
gactgaaaaaatcctaccgtgTCTGTGAGAAGAAGATGTATAATTGTAAT
CTTATGAAATGCCGTTAAAACCTCCCATTTATCATTTCCTCACAAAAACA
GTTTGCGCGTTTCAGATTTTAGACTTATATTTATTAAATCTCAAGTCTAG
TCTTGACCATCGGCGAGAATTTGTGTCTTATCTTGCAtttttttCCAATC
CTCTTTCTCTATTGATTTAGATTGCAAGTATCATCCAGTGTTAATGGACA
AGAATAACTACAGATACATTTTGAAACTGTTGAGGATTAAAGTTGAAGAA
GAAATAAGTGAACATTGGACATCGTCAACGGTTAGTTTTACTGTTTGCAT
TTATCTATCATTTGAAATACAGAATTTCATCAGCTTTTTTGTTCGGATAA
GGCCATTAACGCGTTCACGTTAATCAAAAGATTGATTTTCATCGAAAGTT
TTGATTTTCAGATGCCCCTCTGgcttcagttttgatttttgtattcATTC
AAATTGTATACCAAACGACGCATTACATAATTTTACGTAGATTCCCAAAG
TGCAATAAAAAACCTAGCAAAAGTTTccgtatcaaaagttatggccctGT
AGAACAAAAGTACCGGTATTTTGACCTCTCCTTGTTGGCAGCAAACGTGT
TTAAGCTTGAAACCATCTACTTTTCCAAGTACCGAAATATTTAGAATAAA
TTCTGCTGTCTTTCCTATTTATAGTTTACATCCAAAAAGTTTGTATTACC
ATTATTGAAGATTCTAAAACACCTTACCTATTGGCAGACCTCGCTACGAC
ACGTTTTGTCCGTCGAGCGTGACTTATACTATCAGCTGTTTCAAATCTTA
TTAATGTGCGGAAATGACTATGAGATGAGATATTACGCGAGTTCTATGAT
GTGTCTGATGTTGTATGACGAGTTCTTATCGATGAAGAAAGTGGAAGGAG
AAACTCCAACCTTGCAAATTGAAAATTCAGTCCTGATGCAG

Coding sequence (CDS) from alignment at sc0000083_pilon:1108530..1116270+

>MSTRG.11502.3.p2 ID=MSTRG.11502.3.p2|Name=MSTRG.11502.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0000083_pilon:1108530..1116270+ (Clytia hemisphaerica_ch_hm2_pilon)
gaTAAGAATGTGGAATACATTCACAATGCATGCGCAAGTCTACTTCAATC
ATACCAGTATCAAAAATCACTTGGCAAAATCAATGATGATACCACAACAC
AACATGAAactgaatttgaattgaatAATATTCAAATAAGTAGTACCTCA
ATGCTGACTTCTAAAGCTGAAGAGTCcgAGGAATCAATATTTCAATGGAT
ACCTTTAACGAGTGGTGATCGTCAAATATTGTCAGTCACAGATAGTCGTC
TTCAAAGTGCTTCACCTACACTCATACTGCAATCGTGTGAATTCTTCAAA
TTTATCTTGTTGCATGATTTTCCAGCTGAAGTCTTCATTCAAAGACCTAA
CATTTTGAAGttcTCTACTGAAATTATCCAAGAAATTGTTCAGTCGCTTT
TTGCAAAACAAAGATGTTGAgaTAAGAATGTGGAATACATTCACAATGCA
TGCGCAAGTCTACTTCAATCATACCAGTATCAAAAATCACTTGGCAAAAT
CAATGATGATACCACAACACAACATGAAactgaatttgaattgaatAATA
TTCAAATAAGTAGTACCTCAATGCTGACTTCTAAAGCTGAAGAGTCcgAG
GAATCAATATTTCAATGGATACCTTTAACGAGTGGTGATCGTCAAATATT
GTCAGTCACAGATAGTCGTCTTCAAAGTGCTTCACCTACACTCATACTGC
AATCGTGTGAATTCTTCAAATTTATCTTGTTGCATGATTTTCCAGCTGAA
GTCTTCATTCAAAGACCTAACATTTTGAAGttcTCTACTGAAATTATCCA
AGAAATTGTTCAGTCGCTTTTTGCAAAACAAAGATGTTGAgaTAAGAATG
TGGAATACATTCACAATGCATGCGCAAGTCTACTTCAATCATACCAGTAT
CAAAAATCACTTGGCAAAATCAATGATGATACCACAACACAACATGAAac
tgaatttgaattgaatAATATTCAAATAAGTAGTACCTCAATGCTGACTT
CTAAAGCTGAAGAGTCcgAGGAATCAATATTTCAATGGATACCTTTAACG
AGTGGTGATCGTCAAATATTGTCAGTCACAGATAGTCGTCTTCAAAGTGC
TTCACCTACACTCATACTGCAATCGTGTGAATTCTTCAAATTTATCTTGT
TGCATGATTTTCCAGCTGAAGTCTTCATTCAAAGACCTAACATTTTGAAG
ttcTCTACTGAAATTATCCAAGAAATTGTTCAGTCGCTTTTTGCAAAACA
AAGATGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11502MSTRG.11502Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11502.3.p2.exon1MSTRG.11502.3.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11502.3.p2.exon2MSTRG.11502.3.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11502.3.p2.exon3MSTRG.11502.3.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11502.3.p2.exon4MSTRG.11502.3.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11502.3.p2.exon5MSTRG.11502.3.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11502.3.p2.exon6MSTRG.11502.3.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11502.3.p2.exon7MSTRG.11502.3.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11502.3.p2.exon8MSTRG.11502.3.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11502.3.p2.exon9MSTRG.11502.3.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11502.3.p2.exon10MSTRG.11502.3.p2.exon10Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11502.3.p2.exon11MSTRG.11502.3.p2.exon11Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11502.3.p2.exon12MSTRG.11502.3.p2.exon12Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11502.3.p2MSTRG.11502.3.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000083_pilongenomesc0000083_pilon:1108530..1116270 +