MSTRG.11834.1.p1 (mRNA) -

Overview
NameMSTRG.11834.1.p1
Unique NameMSTRG.11834.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000087_pilon:471675..476230-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11834.1.p1 ID=MSTRG.11834.1.p1|Name=MSTRG.11834.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4556bp|location=Sequence derived from alignment at sc0000087_pilon:471675..476230- (Clytia hemisphaerica_ch_hm2_pilon)
AAATTCATCTCAACATTTCAGATATAAAAGAATCAAAAATATGTATAAGA
TATTGACATTTATATTACTGGCTTCAGAAATTTGTTGTCAATGGATACCA
GTGGAGAAAAACGAAGATTCGCCTTGCTACAACTATAAATGTCCTTTCGG
TCAACGTTGCGTCATTATCAATAATCAACCTATTTGCAAGTGCAACCACA
ACTGTGATAAATCAGAGAAAACTGGGCCAGTTTGTACGAAGAGTGGTCGC
ACTTACCCTAATTTGTGTAAATTAAAACAAGATGAATGCAAGAGAGGCGA
TTACATAATGGTAGATCATTTCGGTGCTTGCAAAACCGGAGGTTAGAAAT
TAAATTCAATTGTCACGCTTTAGTCTTTGACGTGCCCTACACTGCCCTTT
TATGTGAAAAAAATTGATTAAATCTTTATCAGTTGAGCCAAGCCAAACAA
CTTTAAGTTAGAATTTGCCTCATATTATTTATCGTTAGTTAGCTTGGCTA
GTCATCATCTTTCGGGTTAAAACTCCCCGTTTAACTTAACAAATGAATCA
TTGATTTTACCTTTTGAAAGAAAGTCTTAAGAAAAGTATGGAACTTGATG
TTTCTTGATGCTCTTTTTATGATGTGAAATGTCATCAAAAAGGATTATAA
TGAAAAGCCAAATAAGTATTTAAAATACTGTTTACATTGAACATAGATAA
TAATCAAGGGATGATCTCCTGAAAGTGTAGTCAACACATTGGTTGCATCG
TATTACTAAGCGATGAGTTACCAAGCTCATATATATAGTTTAAGATTATA
ATCAACAAAAGAAGAAAGGCTCCACACCTTTTTTGGTCCAGTGATTTGTA
ATAGAAGGCCAAAAAAAAGCAGGATGAGGTCACAAAGAGACTTATAGTTA
TAGATGTAGAATTTAAGATTAGAATCAACGAAAGAAGAAAGGTTTTTTAC
GCCTTTTGTGTCCCACAATTTGATATAAAAGCCAACATAGTGGTATGAGT
TCGAAATACTGATGATAAGAGCACTTTTCATTCTGTTTATTCTGTTTATT
TCAGCCGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGTTGGGATTGTG
TAAACAATGGAAAGAACACGGGGCATGTACCAAACACATCAATTTAATGA
AACGGTTCTGTAGAGCAACGTGCGACATGTGTGGTAAGCCTTATTCGGGA
AATAGTCCGTACCCCTATGTTGAGGAGGTGTGGCGTACAGGGTAATATGG
AAAGTAAAAATTCCAGGGGGTCAGGTTTTTCGCTTTTTCGTGTAAAAATT
TACGATGGTCAATAAATTGAGGTTGAAAATTCAGGTTGTTTAGTAACATG
AGGTTGAAAATCCAGGGTGGTCAATAAAAGGAGGAAAACAATTCATGGTG
GTCCAAGAATGAGAAAAAAATTATGGGGCTCCTAAAAATTGAAAAATAAG
TCCATGGGGTTCTCCTCAATAGGGGTACAATTATTTTCTGGAATAGCCTA
ATTTTTCTGATATCGTCCAAACAAAAACTAGATTTCAAGCAAAAGAAATT
TGCCGAATCATCAAATTTTTGAAACTTACTATATTTGTCTTTTGTCTTTT
TTCTATTCATTAGACGTGAAAGCCTTGCCAGCTGCTTGCATGGAATCCAA
GTTCGGGTGTTGTCCTGGTAACAAAATACAAGCCTTAGGTCCTCGAAATA
AAGGCTGTTTTAATGGTAAGTCAGCAATATCAATTTCGATCCTATTAATT
TCCCATAATGCTTCTTGTTCTTTTTGTGAAAGCATCATTGGCACAAAAAT
AAAAACTTTTTAGAAAAGCAAATTATACCAAACTCTTGCGTTATCTGATA
TTCAGATGGCGGATTGGCGGCCGCCCAGGCTAAAGCCGTAAAGGAGCGGG
ACAATTTCCTATCAGAGATGAATGATAGTCGGCCTTTGATTTGCCGCCTC
CCCAGTCGGGTTCAACTACCCTTGCGCATAAAAATAAAAATCTTTCGGTT
GGACCCGCCAATCCCCGAAAACGAGGGCTGGGTTATCAGGCCTCCCACAC
AGATTTATAAAGCCCGAATGGCTAGATGTCGTGCTTTAAGCTATCGCAGG
CAAAAAAAGTGAATATCGCAAGAAATATTGTTTCTATTGTTTCTGGAAAT
CCTCTAAGCTTCTGATTGGTCAAGCACTGAAATTCTATTATAATGTCACG
TTACCTAGGTAGAATTTCCTACCTAACCACGGCACACTTTTCATCCAAAG
CACGACATCTAGCCCTTCGGGCTTTCTAATCTGTGCCTCCCTCTGCAAAA
TCATTGACGCGGTCTTTAAAAATTCCGTAAAGTAAACCTTCCAGATGTTG
TAAATTTTCCCGACCTTCAGAGCTTTAGCGTGTCGGAATGAAAATTTCTG
CATCTAAGTGCCACATAAACTCTTGCGTCAAGCCTGATGAGTTGCAAGAA
TATATGTATGCAAAGAAAAATGTTTTCATTCACCTTCTTGTTTGTTTGCA
AACGACAGGTTGTCGAGATGGTCGCTTGTGCCCATTCTTCCCAAACTTCT
GTGGTGATGAAGCCAATAAAGAAACAATGAAGAAATTTTGTCCTTACACA
TGTCGATATTGCGGTGAGTATGATAGTTTCCAACCACTCTGGAAAGAAAA
AGGAAACTTACAATAATAGATGATCTATAGAGAGCCAAGATATGAATACC
TGAATACCCTTGCAATGTTTAATGAATGTTCTTAAATATTGAAGTCTTCG
AAACCTCGTGTTGTTTTTGTAGAGCAAAAACATGCATTTGATGTCACATC
CATATCAATAGCAATACCTGCCATAGCGATTTATCTCCCAGGGAGGAGAG
GGTACTTAGGCGAAATGGAGGGTACGGTATGTGTCGCCCTTAAGGGTACC
TTTTGTGGATTTCCAAAGTCCCGCTAAGGGTCGGAAGAATCAGAAAATCA
AATTTTAGTCCCACTAAGGGGCGGAGAAATAGGAAAACTTCAACTTTTTA
CCCCCCCCGGAAAAATAGAAATTTGGTTAAAATTGGTCAAATTTGTCCCA
ATAAGGGTGGTAAAATTCACAAAATTTTCCTTTGTTTTCTCTCTTTTAGT
CCCGGCAAGAGTCCAAGGGTCGAAAGTCGGGCGGCACCCTCGCCCGTCAG
CTCACAGCCCTAGTACCCCCTCGTCTGGGGATTTATCTAAACGGCAGGTC
CAAAATGCATAAAACATAATGCATATTGCATAATGCATAATGCATAATAT
CTGAAAAATGTCAATTTTAGAGGCTATAATAAGGAGAATTTGAAAGATAA
TACTTTCAACAAAACAAATAACCACTTTCTGCCAGAAAATAAAAAGTAGA
AAGCTGTAAATTTGAATTTTGGAAGATGAAGAAAATCCATGGTCCACTGA
AAATGCTTGCCGCCATTTTGATTTTCATAGTTGTATTTTACAGAACGTAA
TATAGTGTAGAAAAAACACGAAAATATCTCCTCCGTATATTACTTTTATA
GCAAGATCTTTATTTTTCCTCTTAAAAAGCATTAACCATGTGAATACTTT
TTGTTAGATAAGCTAATATCCAGCCAATATAAATTAAAGAGCTACATGCG
AAAGCTAAATCAAAGAAAATAGACTTCGAATCTTTTTACATTCGAATGTT
TATGCATTTACCTTTTTTGAGAAAGAAGAAGGGGGAAACCTTTCTGATCT
GTTGCATCTTCTTATATTATCTATGCTGACGGAAAACCCTTTGTTGTTAT
GATTCGAATGTTTTCTTTTTCGTTCGGATTCGAAAAGTAAATATCATGTC
TGGGGAAATCCCTCTGATTGGAATGTTTACTTAAGACTTAAGAGGTTTGA
CGGTTTGCTCCCAGCTTTAGCCTCTACAAAGGAGAGTTTTAGAAAATATA
AAATCGTTCTGTAAATTACACAATACTATTATGCATTATGCAATATGCAT
TATGTTTTATGCATTTTGTACCTGCCGTTTATCTAAACTGAACCCTCCCC
CGATCTGAACCCAAACAAATTAATTTCTAATTCCATAGTACTCTTTTCTT
CCGGTCGTAATGGAAATTTCTTCCTTTGTTATAGTACCTGAAGGTAACGA
GCGTGTGGAGATTCTAACTGAAGACAACTTGTAAAAGAGCGATTATAAAA
AAGTATACAAAGAGACACGTTGGTTTGCTGGCTTAACCAACAATGATTAC
CCGTCTACCATCTTTAAAGGGAAATGGTTCTTCTTAAAGCAATACTTCGA
AACAACCAAAACTAAATAAAGCTTTTTATTTCAACTGAAGGGATATAGTG
GTAATTATAAGGACTTTCTGAAGCAGGAAGGAATTTTTTAAGATTTTAAT
TGAGGTATGGCGTTAGAAATCCTTTCACATCTCAATCACCACATTGAAAT
ACAACTTGAAATTTTGCACAAAGACAGTCCAACGATGTAAAAATAATAGA
TAACCAACTACCTCTAGAAGGCACTTCTCCCAAGAGAACAATCATTGTTT
TCCTATAGTGCGTGTTATGCTTTTAGCTAGATTTTGACACACTTTTTGAC
ATCCAG

Coding sequence (CDS) from alignment at sc0000087_pilon:471675..476230-

>MSTRG.11834.1.p1 ID=MSTRG.11834.1.p1|Name=MSTRG.11834.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3435bp|location=Sequence derived from alignment at sc0000087_pilon:471675..476230- (Clytia hemisphaerica_ch_hm2_pilon)
TACCTGAAGGTAACGAGCGTGTGGAGATTCTAACTGAAGACAACTTGTAA
GTTGTCGAGATGGTCGCTTGTGCCCATTCTTCCCAAACTTCTGTGGTGAT
GAAGCCAATAAAGAAACAATGAAGAAATTTTGTCCTTACACATGTCGATA
TTGCGACGTGAAAGCCTTGCCAGCTGCTTGCATGGAATCCAAGTTCGGGT
GTTGTCCTGGTAACAAAATACAAGCCTTAGGTCCTCGAAATAAAGGCTGT
TTTAATGCCGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGTTGGGATT
GTGTAAACAATGGAAAGAACACGGGGCATGTACCAAACACATCAATTTAA
TGAAACGGTTCTGTAGAGCAACGTGCGACATGTGTGATGTATAAGATATT
GACATTTATATTACTGGCTTCAGAAATTTGTTGTCAATGGATACCAGTGG
AGAAAAACGAAGATTCGCCTTGCTACAACTATAAATGTCCTTTCGGTCAA
CGTTGCGTCATTATCAATAATCAACCTATTTGCAAGTGCAACCACAACTG
TGATAAATCAGAGAAAACTGGGCCAGTTTGTACGAAGAGTGGTCGCACTT
ACCCTAATTTGTGTAAATTAAAACAAGATGAATGCAAGAGAGGCGATTAC
ATAATGGTAGATCATTTCGGTGCTTGCAAAACCGGAGTACCTGAAGGTAA
CGAGCGTGTGGAGATTCTAACTGAAGACAACTTGTAAGTTGTCGAGATGG
TCGCTTGTGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAAG
AAACAATGAAGAAATTTTGTCCTTACACATGTCGATATTGCGACGTGAAA
GCCTTGCCAGCTGCTTGCATGGAATCCAAGTTCGGGTGTTGTCCTGGTAA
CAAAATACAAGCCTTAGGTCCTCGAAATAAAGGCTGTTTTAATGCCGTCC
GTTGTTATGACAACAAGAAGGAGAGTGAGTTGGGATTGTGTAAACAATGG
AAAGAACACGGGGCATGTACCAAACACATCAATTTAATGAAACGGTTCTG
TAGAGCAACGTGCGACATGTGTGATGTATAAGATATTGACATTTATATTA
CTGGCTTCAGAAATTTGTTGTCAATGGATACCAGTGGAGAAAAACGAAGA
TTCGCCTTGCTACAACTATAAATGTCCTTTCGGTCAACGTTGCGTCATTA
TCAATAATCAACCTATTTGCAAGTGCAACCACAACTGTGATAAATCAGAG
AAAACTGGGCCAGTTTGTACGAAGAGTGGTCGCACTTACCCTAATTTGTG
TAAATTAAAACAAGATGAATGCAAGAGAGGCGATTACATAATGGTAGATC
ATTTCGGTGCTTGCAAAACCGGAGTACCTGAAGGTAACGAGCGTGTGGAG
ATTCTAACTGAAGACAACTTGTAAGTTGTCGAGATGGTCGCTTGTGCCCA
TTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAACAATGAAGAA
ATTTTGTCCTTACACATGTCGATATTGCGACGTGAAAGCCTTGCCAGCTG
CTTGCATGGAATCCAAGTTCGGGTGTTGTCCTGGTAACAAAATACAAGCC
TTAGGTCCTCGAAATAAAGGCTGTTTTAATGCCGTCCGTTGTTATGACAA
CAAGAAGGAGAGTGAGTTGGGATTGTGTAAACAATGGAAAGAACACGGGG
CATGTACCAAACACATCAATTTAATGAAACGGTTCTGTAGAGCAACGTGC
GACATGTGTGATGTATAAGATATTGACATTTATATTACTGGCTTCAGAAA
TTTGTTGTCAATGGATACCAGTGGAGAAAAACGAAGATTCGCCTTGCTAC
AACTATAAATGTCCTTTCGGTCAACGTTGCGTCATTATCAATAATCAACC
TATTTGCAAGTGCAACCACAACTGTGATAAATCAGAGAAAACTGGGCCAG
TTTGTACGAAGAGTGGTCGCACTTACCCTAATTTGTGTAAATTAAAACAA
GATGAATGCAAGAGAGGCGATTACATAATGGTAGATCATTTCGGTGCTTG
CAAAACCGGAGTACCTGAAGGTAACGAGCGTGTGGAGATTCTAACTGAAG
ACAACTTGTAAGTTGTCGAGATGGTCGCTTGTGCCCATTCTTCCCAAACT
TCTGTGGTGATGAAGCCAATAAAGAAACAATGAAGAAATTTTGTCCTTAC
ACATGTCGATATTGCGACGTGAAAGCCTTGCCAGCTGCTTGCATGGAATC
CAAGTTCGGGTGTTGTCCTGGTAACAAAATACAAGCCTTAGGTCCTCGAA
ATAAAGGCTGTTTTAATGCCGTCCGTTGTTATGACAACAAGAAGGAGAGT
GAGTTGGGATTGTGTAAACAATGGAAAGAACACGGGGCATGTACCAAACA
CATCAATTTAATGAAACGGTTCTGTAGAGCAACGTGCGACATGTGTGATG
TATAAGATATTGACATTTATATTACTGGCTTCAGAAATTTGTTGTCAATG
GATACCAGTGGAGAAAAACGAAGATTCGCCTTGCTACAACTATAAATGTC
CTTTCGGTCAACGTTGCGTCATTATCAATAATCAACCTATTTGCAAGTGC
AACCACAACTGTGATAAATCAGAGAAAACTGGGCCAGTTTGTACGAAGAG
TGGTCGCACTTACCCTAATTTGTGTAAATTAAAACAAGATGAATGCAAGA
GAGGCGATTACATAATGGTAGATCATTTCGGTGCTTGCAAAACCGGAGTA
CCTGAAGGTAACGAGCGTGTGGAGATTCTAACTGAAGACAACTTGTAAGT
TGTCGAGATGGTCGCTTGTGCCCATTCTTCCCAAACTTCTGTGGTGATGA
AGCCAATAAAGAAACAATGAAGAAATTTTGTCCTTACACATGTCGATATT
GCGACGTGAAAGCCTTGCCAGCTGCTTGCATGGAATCCAAGTTCGGGTGT
TGTCCTGGTAACAAAATACAAGCCTTAGGTCCTCGAAATAAAGGCTGTTT
TAATGCCGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGTTGGGATTGT
GTAAACAATGGAAAGAACACGGGGCATGTACCAAACACATCAATTTAATG
AAACGGTTCTGTAGAGCAACGTGCGACATGTGTGATGTATAAGATATTGA
CATTTATATTACTGGCTTCAGAAATTTGTTGTCAATGGATACCAGTGGAG
AAAAACGAAGATTCGCCTTGCTACAACTATAAATGTCCTTTCGGTCAACG
TTGCGTCATTATCAATAATCAACCTATTTGCAAGTGCAACCACAACTGTG
ATAAATCAGAGAAAACTGGGCCAGTTTGTACGAAGAGTGGTCGCACTTAC
CCTAATTTGTGTAAATTAAAACAAGATGAATGCAAGAGAGGCGATTACAT
AATGGTAGATCATTTCGGTGCTTGCAAAACCGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11834MSTRG.11834Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11834.1.p1MSTRG.11834.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11834.1.p1.exon5MSTRG.11834.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11834.1.p1.exon4MSTRG.11834.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11834.1.p1.exon3MSTRG.11834.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11834.1.p1.exon2MSTRG.11834.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11834.1.p1.exon1MSTRG.11834.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087_pilongenomesc0000087_pilon:471675..476230 -