MSTRG.11701.4.p1 (mRNA) -

Overview


Name	MSTRG.11701.4.p1
Unique Name	MSTRG.11701.4.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:1201614..1204998+
coding sequence from alignment at sc0000085_pilon:1201614..1204998+

mRNA from alignment at sc0000085_pilon:1201614..1204998+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.11701.4.p1 ID=MSTRG.11701.4.p1|Name=MSTRG.11701.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3385bp|location=Sequence derived from alignment at sc0000085_pilon:1201614..1204998+ (Clytia hemisphaerica_ch_hm2_pilon)
GTTGAAAGGCGCGGTGaattgttcttttgtttttgatggaGGAGAGAATA
ATGATTGCAAGCAGGCTGTTTTTGTGTTGTTGATGATGATGGAATGATAA
ACCGGTTTGTGTGTGTATACACAGAGAAAGAAATATGGCTGATGTCTTCT
TACTTACGAAATAAATAATTCCCTAGCCTTTTTTGTTGTTCTCTTGTTTT
ATATATGGAAAATTTTTACTTGCTTTGATTATTTTGCTGGGATTCTATTA
TTTATCAATGGTTTTTACATGTACATAAAATTCACCTACTACAACTACca
aaaaaaatgttacaaaatagATATAGACGACGCTATAGGGTATGTTGTTG
ATCTTTACAGGGGTTGGTTGGTGAATGAgctttattattttcttgtgGTT
ACGATCGTAGTGTCTTTTATTATCAAGGCTGGATGATTGAAAATCTCTTG
TTTGTTTAATACTTTGATGTAGAGTTTCGAACATTAAGTTTGTAAGCTGA
ATGTTAAAATTGTTCGAATTTTACCTTATAATCAATTTTGGTTTTAGCTT
CGAGAAAGTTTTCATAACTAGTAAAGTTTCAAGGATCTTTGGTTGTGCAG
TATGGAATGCAATGGATTGATTTTAGTCACAAATTGTTTAATATTACAtc
gtttttcatgattttttgtttgtttcctCAGGACGAAGATAACCAAGAAA
CAGAGACACAGCCTTCGACGAGGCGAACGACACGAACTTACGATACTGGG
GGTAGCACCACTGATACAACCTCCACACGAAGAACCAATCGTACATCCAC
TGATGACGATTCAAGCTCTCGCATGGTAAGCAGTAAcatttttgttggaa
agataatcgaGAGAAAGTAAAGTGAAACTATTTTTCAGGTTCCTCATTTT
ATTGGTCGAGTCTTTAAGCAATCttttagagagagagagatgaaataatt
ttcatgaaAGTGTTCAACGAAATAAAGCACTTGATCAAACCATTTCTCTT
CCTCACGTTTAAAAGCAGGGAGTATCTCTTTCTCCCTTTTCTTCAAAGGA
ATGTCAGGGATAAAGTTTCTGTTTTATTTGCTTTGACGTTTGTtgaaaat
atctcaaatttctTGCTGCCATTTTGATTCCTGTTGTTTCTTCAACCGAT
TGTTTTCTCCTTGCTTCTTTACAGAGTATCGCCGAAAGGCTACATAAAAA
GAATCAAGAACTGCTTGCAACAACTTCAGATAATAACAATTCATCGGGCA
GATCATGGCAACGCTCTTCAAACCCTTCGACGACCTCTTCAACTGTAAGC
ATTTCCTAAATTCTTTTAGTACCAAAGGGAATGTAGTTGTTATTTCTTAG
CAATAACTTTTTTCACAAATGATCCCCCTTTCTCTTTGATAAGAGGCAAA
CCTATTTTCTCTCTGATTATTAAAAGGAGGACATACAGAGCGCAAGCATC
ATACAATATTATCATTATTCAGTAATCCCTGCTGTGCAGTGGCAAAACTA
ATAGCTCCAGTTCAATTCCATAGGAGACTGAAGCTTTTACAACTGTATGA
GGTTTTTCAGATAGGATGATTGTGTCTTGTTTTATACTTTCCAAATCTTG
GTCTAGTAGGAGTTTGAAACTTAATATTTCTTAATTATCACTGATGATAG
GCCTGACGGACATAATGACCAGTTCTTCTCTTCACTTTCAGTCATCTTCG
GACACGGGGGATACAAAAGATCTACAACGAAAACTCGACCAAGCTGTCAA
AGAAGTAGAAGAATACAAATCCAagtatgaaaaaatgaaaaaggtaagca
tattttctttcatttgaaaTTCCATTAcaccatgttttttttaaatcaat
cattGATCAGTACATGTttctttttacaagaacatccaaaatttttgaag
ccttcggatgttcttattctCACCATTTGTGCtacaatttcctaagaaat
cgggtgttttagagcccactaagccatcgaagccttatgatCTTATatta
tttgttcttataaaaacgtgtggTTTGGCTATTTCATTGGCACTTCAATT
TCTCAtgagtcaatttttttggacttttaaattatttgtttttatttgtt
ttcaggaaaaagaagaattagAAAAACAACTTAGTCAATATAAAGAAGAT
ATCGATGTAagtattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgatCattgattgatCattgattgattgattgat
tttgtaAGTTTTTGAGCAATCCAGAAATGTATGGGCCTAGAGTATTAGGG
TTTACACTTGCCtttttttCAAACGTTATCTTGATGATTGCCTTCCCGAA
TCAATATAATTGGCAGCAACACTGCAATATGCAATATTTCTTAACATGCA
TTGCTCTGTCTAAAtcaattgtttgtttttatattttgtagaaAGTGCAA
GATCTAAAGAGCGACAATATACGTCTGAAAGATGAGAATGGGGCGCTTAT
CAGAGTTATTAGTAAATTATCACGTACCCCTGCTTCATCTTCTTCGTGAG
TCGTGGATCGTCCGCTGCTTCCTTGtgaattattatattattattattgc
tgAGGTGCTGCTAGTGCTACCGAGGAGAGATGAGCCgctgattaaatttt
tttaaataagaaagaGAGAACTTTTTATACTACCTTTCATAGAACAGTTG
TTTtaataaatgaagaagaagaaggataTAAACAACAAAATACAACGTCC
CAACAAATTCCAGTGAATATTCGCGCTCACCCTCGTTCGATGAATTGTGT
CCGGGCTCACGATATTGGACATGATCGCAGTGCGTGTTTCCATAACAGTA
ATGAGATATCTGTGAAACACGAATATACCGACTGACATGCTCTGTCGCTC
AATGGTCAACGCAGTTAATGTtttctgaaatctttttttatgaataaact
TATTGAAGAAGTGCAGGTATTTTGGTGGTGAAAAAGTGATATTAAGAAAC
AGCTTTTTGAAAAGGATTGGATTCCTTAGAGATTGATTCtctttgattat
tttatttacaaaaagaaaagacaaaTTCTCCTTCTTTTTCGTACCTATGA
ATTCGATTGACTTCTGCACTGAAGcgttttgttgtctttttatgCTAGTG
AGAAATGAGACGACTCATCAGACGAATTgatcattatcatcatcatcaac
attttcacactttttcatcaaatttgagaTTAGAATTCCACAGTAACGTT
GTTTGTATTATCAAAAGATAttaataattatatttttctattagTCCAAC
ATGatttgctaaaaaaaatttttgagtcCGTTTGTAGGTTGAaacgaaaa
gaagaaaaaaagattaatttGACAACGTTAAAAAA

Coding sequence (CDS) from alignment at sc0000085_pilon:1201614..1204998+

>MSTRG.11701.4.p1 ID=MSTRG.11701.4.p1|Name=MSTRG.11701.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3348bp|location=Sequence derived from alignment at sc0000085_pilon:1201614..1204998+ (Clytia hemisphaerica_ch_hm2_pilon)
atgttacaaaatagATATAGACGACGCTATAGGGACGAAGATAACCAAGA
AACAGAGACACAGCCTTCGACGAGGCGAACGACACGAACTTACGATACTG
GGGGTAGCACCACTGATACAACCTCCACACGAAGAACCAATCGTACATCC
ACTGATGACGATTCAAGCTCTCGCATGAGTATCGCCGAAAGGCTACATAA
AAAGAATCAAGAACTGCTTGCAACAACTTCAGATAATAACAATTCATCGG
GCAGATCATGGCAACGCTCTTCAAACCCTTCGACGACCTCTTCAACTTCA
TCTTCGGACACGGGGGATACAAAAGATCTACAACGAAAACTCGACCAAGC
TGTCAAAGAAGTAGAAGAATACAAATCCAagtatgaaaaaatgaaaaagg
aaaaagaagaattagAAAAACAACTTAGTCAATATAAAGAAGATATCGAT
aaAGTGCAAGATCTAAAGAGCGACAATATACGTCTGAAAGATGAGAATGG
GGCGCTTATCAGAGTTATTAGTAAATTATCACGTACCCCTGCTTCATCTT
CTTCGTGAatgttacaaaatagATATAGACGACGCTATAGGGACGAAGAT
AACCAAGAAACAGAGACACAGCCTTCGACGAGGCGAACGACACGAACTTA
CGATACTGGGGGTAGCACCACTGATACAACCTCCACACGAAGAACCAATC
GTACATCCACTGATGACGATTCAAGCTCTCGCATGAGTATCGCCGAAAGG
CTACATAAAAAGAATCAAGAACTGCTTGCAACAACTTCAGATAATAACAA
TTCATCGGGCAGATCATGGCAACGCTCTTCAAACCCTTCGACGACCTCTT
CAACTTCATCTTCGGACACGGGGGATACAAAAGATCTACAACGAAAACTC
GACCAAGCTGTCAAAGAAGTAGAAGAATACAAATCCAagtatgaaaaaat
gaaaaaggaaaaagaagaattagAAAAACAACTTAGTCAATATAAAGAAG
ATATCGATaaAGTGCAAGATCTAAAGAGCGACAATATACGTCTGAAAGAT
GAGAATGGGGCGCTTATCAGAGTTATTAGTAAATTATCACGTACCCCTGC
TTCATCTTCTTCGTGAatgttacaaaatagATATAGACGACGCTATAGGG
ACGAAGATAACCAAGAAACAGAGACACAGCCTTCGACGAGGCGAACGACA
CGAACTTACGATACTGGGGGTAGCACCACTGATACAACCTCCACACGAAG
AACCAATCGTACATCCACTGATGACGATTCAAGCTCTCGCATGAGTATCG
CCGAAAGGCTACATAAAAAGAATCAAGAACTGCTTGCAACAACTTCAGAT
AATAACAATTCATCGGGCAGATCATGGCAACGCTCTTCAAACCCTTCGAC
GACCTCTTCAACTTCATCTTCGGACACGGGGGATACAAAAGATCTACAAC
GAAAACTCGACCAAGCTGTCAAAGAAGTAGAAGAATACAAATCCAagtat
gaaaaaatgaaaaaggaaaaagaagaattagAAAAACAACTTAGTCAATA
TAAAGAAGATATCGATaaAGTGCAAGATCTAAAGAGCGACAATATACGTC
TGAAAGATGAGAATGGGGCGCTTATCAGAGTTATTAGTAAATTATCACGT
ACCCCTGCTTCATCTTCTTCGTGAatgttacaaaatagATATAGACGACG
CTATAGGGACGAAGATAACCAAGAAACAGAGACACAGCCTTCGACGAGGC
GAACGACACGAACTTACGATACTGGGGGTAGCACCACTGATACAACCTCC
ACACGAAGAACCAATCGTACATCCACTGATGACGATTCAAGCTCTCGCAT
GAGTATCGCCGAAAGGCTACATAAAAAGAATCAAGAACTGCTTGCAACAA
CTTCAGATAATAACAATTCATCGGGCAGATCATGGCAACGCTCTTCAAAC
CCTTCGACGACCTCTTCAACTTCATCTTCGGACACGGGGGATACAAAAGA
TCTACAACGAAAACTCGACCAAGCTGTCAAAGAAGTAGAAGAATACAAAT
CCAagtatgaaaaaatgaaaaaggaaaaagaagaattagAAAAACAACTT
AGTCAATATAAAGAAGATATCGATaaAGTGCAAGATCTAAAGAGCGACAA
TATACGTCTGAAAGATGAGAATGGGGCGCTTATCAGAGTTATTAGTAAAT
TATCACGTACCCCTGCTTCATCTTCTTCGTGAatgttacaaaatagATAT
AGACGACGCTATAGGGACGAAGATAACCAAGAAACAGAGACACAGCCTTC
GACGAGGCGAACGACACGAACTTACGATACTGGGGGTAGCACCACTGATA
CAACCTCCACACGAAGAACCAATCGTACATCCACTGATGACGATTCAAGC
TCTCGCATGAGTATCGCCGAAAGGCTACATAAAAAGAATCAAGAACTGCT
TGCAACAACTTCAGATAATAACAATTCATCGGGCAGATCATGGCAACGCT
CTTCAAACCCTTCGACGACCTCTTCAACTTCATCTTCGGACACGGGGGAT
ACAAAAGATCTACAACGAAAACTCGACCAAGCTGTCAAAGAAGTAGAAGA
ATACAAATCCAagtatgaaaaaatgaaaaaggaaaaagaagaattagAAA
AACAACTTAGTCAATATAAAGAAGATATCGATaaAGTGCAAGATCTAAAG
AGCGACAATATACGTCTGAAAGATGAGAATGGGGCGCTTATCAGAGTTAT
TAGTAAATTATCACGTACCCCTGCTTCATCTTCTTCGTGAatgttacaaa
atagATATAGACGACGCTATAGGGACGAAGATAACCAAGAAACAGAGACA
CAGCCTTCGACGAGGCGAACGACACGAACTTACGATACTGGGGGTAGCAC
CACTGATACAACCTCCACACGAAGAACCAATCGTACATCCACTGATGACG
ATTCAAGCTCTCGCATGAGTATCGCCGAAAGGCTACATAAAAAGAATCAA
GAACTGCTTGCAACAACTTCAGATAATAACAATTCATCGGGCAGATCATG
GCAACGCTCTTCAAACCCTTCGACGACCTCTTCAACTTCATCTTCGGACA
CGGGGGATACAAAAGATCTACAACGAAAACTCGACCAAGCTGTCAAAGAA
GTAGAAGAATACAAATCCAagtatgaaaaaatgaaaaaggaaaaagaaga
attagAAAAACAACTTAGTCAATATAAAGAAGATATCGATaaAGTGCAAG
ATCTAAAGAGCGACAATATACGTCTGAAAGATGAGAATGGGGCGCTTATC
AGAGTTATTAGTAAATTATCACGTACCCCTGCTTCATCTTCTTCGTGA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.11701	MSTRG.11701	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11701.4.p1	MSTRG.11701.4.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11701.4.p1.exon1	MSTRG.11701.4.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11701.4.p1.exon2	MSTRG.11701.4.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11701.4.p1.exon3	MSTRG.11701.4.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11701.4.p1.exon4	MSTRG.11701.4.p1.exon4	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11701.4.p1.exon5	MSTRG.11701.4.p1.exon5	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11701.4.p1.exon6	MSTRG.11701.4.p1.exon6	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000085_pilon	genome	sc0000085_pilon:1201614..1204998 +

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MSTRG.11701.4.p1 (mRNA) -